Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0806600 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 1.4e-122 443.0 230 100.0
Zm00001eb302900 Zea mays HOM05D003715 ORTHO05D003958 6.6e-27 125.2 96 68.8
Os07g0204100 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 5.3e-24 115.5 95 67.4
Glyma.16G153700 Glycine max HOM05D003715 ORTHO05D003958 5.4e-21 105.5 237 35.0
Sabra19G0044200 Salix brachista HOM05D003715 ORTHO05D003958 5.4e-21 105.5 123 43.1
Sabra19G0047500 Salix brachista HOM05D003715 ORTHO05D003958 5.4e-21 105.5 123 43.1
Thecc.05G249800 Theobroma cacao HOM05D003715 ORTHO05D003958 9.3e-21 104.8 187 38.0
arahy.Tifrunner.gnm1.ann1.V3MY1S Arachis hypogaea HOM05D003715 ORTHO05D003958 2.1e-20 103.6 248 31.0
PSO339G5928 Papaver somniferum HOM05D003715 ORTHO05D003958 2.1e-20 103.6 144 39.6
Psat1g091040 Pisum sativum HOM05D003715 ORTHO05D003958 2.7e-20 103.2 223 32.7
Glyma.02G072500 Glycine max HOM05D003715 ORTHO05D003958 6.0e-20 102.1 185 37.3
VMungo0464G1653 Vigna mungo HOM05D003715 ORTHO05D003958 6.0e-20 102.1 244 33.2
Eucgr.A02102 Eucalyptus grandis HOM05D003715 ORTHO05D003958 1.3e-19 100.9 150 44.0
Potri.019G035600 Populus trichocarpa HOM05D003715 ORTHO05D003958 1.3e-19 100.9 110 45.5
PSO384G3755 Papaver somniferum HOM05D003715 ORTHO05D003958 1.7e-19 100.5 127 41.7
QL07p018445 Quercus lobata HOM05D003715 ORTHO05D003958 1.7e-19 100.5 165 36.4
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 1.7e-19 100.5 94 54.3
Potri.013G057200 Populus trichocarpa HOM05D003715 ORTHO05D003958 2.3e-19 100.1 98 49.0
Phvul.004G080700 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 3.0e-19 99.8 244 32.8
Ca_04486_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 3.9e-19 99.4 244 33.2
Manes.08G145000 Manihot esculenta HOM05D003715 ORTHO05D003958 5.1e-19 99.0 153 37.3
Medtr6g029250 Medicago truncatula HOM05D003715 ORTHO05D003958 5.1e-19 99.0 231 32.0
PSO781G0019 Papaver somniferum HOM05D003715 ORTHO05D003958 6.6e-19 98.6 170 38.8
TWI32G0411 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 1.9e-18 97.1 136 42.6
TWI34G1349 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 2.5e-18 96.7 178 37.1
MSTRG.26069 Avicennia marina HOM05D003715 ORTHO05D003958 5.6e-18 95.5 106 43.4
COL.COLO4_36085 Corchorus olitorius HOM05D003715 ORTHO05D003958 5.6e-18 95.5 207 31.4
Manes.09G140500 Manihot esculenta HOM05D003715 ORTHO05D003958 5.6e-18 95.5 217 35.5
Lj1g0002462 Lotus japonicus HOM05D003715 ORTHO05D003958 7.3e-18 95.1 137 43.1
Aqoxy2G00514 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 1.3e-17 94.4 178 35.4
Cfa001533 Carpinus fangiana HOM05D003715 ORTHO05D003958 1.6e-17 94.0 168 35.7
Hma1.2p1_0152F.1_g067600 Hydrangea macrophylla HOM05D003715 ORTHO05D003958 1.6e-17 94.0 112 45.5
MBI01_g25640_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.6e-17 94.0 195 35.9
Sabra13G0051000 Salix brachista HOM05D003715 ORTHO05D003958 1.6e-17 94.0 95 47.4
Lalb_Chr02g0157161 Lupinus albus HOM05D003715 ORTHO05D003958 2.1e-17 93.6 250 32.8
Atru.chr2.1400 Acer truncatum HOM05D003715 ORTHO05D003958 2.8e-17 93.2 164 37.8
Gorai.007G262000 Gossypium raimondii HOM05D003715 ORTHO05D003958 3.6e-17 92.8 135 40.0
Lj1g0012553 Lotus japonicus HOM05D003715 ORTHO05D003958 4.8e-17 92.4 127 41.7
Sp3g02840 Schrenkiella parvula HOM05D003715 ORTHO05D003958 4.8e-17 92.4 258 29.8
Dinv37021 Davidia involucrata HOM05D003715 ORTHO05D003958 6.2e-17 92.0 156 41.0
Glyma.16G040300 Glycine max HOM05D003715 ORTHO05D003958 6.2e-17 92.0 127 42.5
Gohir.A11G235300 Gossypium hirsutum HOM05D003715 ORTHO05D003958 8.1e-17 91.7 105 45.7
Actinidia30549 Actinidia chinensis HOM05D003715 ORTHO05D003958 1.1e-16 91.3 191 33.5
PGSC0003DMG400008354 Solanum tuberosum HOM05D003715 ORTHO05D003958 1.4e-16 90.9 111 48.6
Solyc10g078590.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 1.8e-16 90.5 106 48.1
PGR142G1981 Punica granatum HOM05D003715 ORTHO05D003958 2.4e-16 90.1 104 50.0
Sopen10g029220 Solanum pennellii HOM05D003715 ORTHO05D003958 2.4e-16 90.1 106 48.1
Actinidia22080 Actinidia chinensis HOM05D003715 ORTHO05D003958 3.1e-16 89.7 192 32.3
Ca_08274_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 3.1e-16 89.7 229 29.3
Haze_19430 Corylus avellana HOM05D003715 ORTHO05D003958 3.1e-16 89.7 174 35.1
Duzib106G1922 Durio zibethinus HOM05D003715 ORTHO05D003958 3.1e-16 89.7 143 37.1
Nn2g12054 Nelumbo nucifera HOM05D003715 ORTHO05D003958 3.1e-16 89.7 143 40.6
MBI04_g28023_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 4.0e-16 89.4 92 53.3
MBI04_g47731_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 4.0e-16 89.4 92 53.3
Carub.0003s0306 Capsella rubella HOM05D003715 ORTHO05D003958 9.0e-16 88.2 262 32.1
Glyma.19G112800 Glycine max HOM05D003715 ORTHO05D003958 9.0e-16 88.2 130 40.8
TPR.G9142 Trifolium pratense HOM05D003715 ORTHO05D003958 9.0e-16 88.2 238 29.0
Nitab4.5_0000658g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.2e-15 87.8 165 35.2
Sc13g0002630 Simmondsia chinensis HOM05D003715 ORTHO05D003958 1.2e-15 87.8 144 37.5
Sed0021221 Sechium edule HOM05D003715 ORTHO05D003958 1.5e-15 87.4 235 32.3
Thhalv10021350m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 2.0e-15 87.0 261 28.4
CANSAT78G1806 Cannabis sativa HOM05D003715 ORTHO05D003958 4.5e-15 85.9 93 43.0
Peaxi162Scf00463g00019 Petunia axillaris HOM05D003715 ORTHO05D003958 4.5e-15 85.9 166 34.9
TPR.G5870 Trifolium pratense HOM05D003715 ORTHO05D003958 4.5e-15 85.9 178 34.3
BcaC05g30247 Brassica carinata HOM05D003715 ORTHO05D003958 5.8e-15 85.5 265 30.9
Hund19231 Selenicereus undatus HOM05D003715 ORTHO05D003958 5.8e-15 85.5 269 29.4
BcaNung05741 Brassica carinata HOM05D003715 ORTHO05D003958 7.6e-15 85.1 264 31.1
CSS0027479 Camellia sinensis var. sinensis HOM05D003715 ORTHO05D003958 7.6e-15 85.1 95 48.4
DCAR_019875 Daucus carota HOM05D003715 ORTHO05D003958 7.6e-15 85.1 200 33.5
Gohir.D11G246200 Gossypium hirsutum HOM05D003715 ORTHO05D003958 7.6e-15 85.1 135 39.3
CsaV3_4G013240 Cucumis sativus L. HOM05D003715 ORTHO05D003958 9.9e-15 84.7 110 45.5
ClCG04G005350 Citrullus lanatus HOM05D003715 ORTHO05D003958 1.3e-14 84.3 112 42.0
Thhalv10014292m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 1.3e-14 84.3 128 42.2
PGR042G0616 Punica granatum HOM05D003715 ORTHO05D003958 1.3e-14 84.3 167 32.9
Cc06_g23060 Coffea canephora HOM05D003715 ORTHO05D003958 1.7e-14 84.0 102 44.1
HanXRQChr14g0438161 Helianthus annuus HOM05D003715 ORTHO05D003958 1.7e-14 84.0 120 40.8
RcHm_v2.0_Chr3g0497011 Rosa chinensis HOM05D003715 ORTHO05D003958 2.2e-14 83.6 122 45.1
Cpa.g.sc51.130 Carica papaya HOM05D003715 ORTHO05D003958 2.9e-14 83.2 101 50.5
Phvul.001G111500 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 2.9e-14 83.2 160 35.6
BolC1t05801H Brassica oleracea HOM05D003715 ORTHO05D003958 3.8e-14 82.8 264 29.5
CiPaw.10G001300 Carya illinoinensis HOM05D003715 ORTHO05D003958 3.8e-14 82.8 148 38.5
MELO3C008806.2 Cucumis melo HOM05D003715 ORTHO05D003958 3.8e-14 82.8 98 44.9
VMungo1383G2890 Vigna mungo HOM05D003715 ORTHO05D003958 3.8e-14 82.8 145 42.1
BraA05t23092Z Brassica rapa HOM05D003715 ORTHO05D003958 4.9e-14 82.4 259 29.7
Ciclev10021362m.g Citrus clementina HOM05D003715 ORTHO05D003958 4.9e-14 82.4 159 32.7
Zm00001eb160930 Zea mays HOM05D015210 ORTHO05D003958 4.9e-14 82.4 220 41.4
Zm00001eb160920 Zea mays HOM05D015210 ORTHO05D003958 6.4e-14 82.0 216 38.0
MBI04_g37012_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 8.4e-14 81.6 89 49.4
Oeu035703.1 Olea europaea HOM05D003715 ORTHO05D003958 8.4e-14 81.6 169 36.7
arahy.Tifrunner.gnm1.ann1.KTU7AY Arachis hypogaea HOM05D003715 ORTHO05D003958 1.4e-13 80.9 104 43.3
Dinv14575 Davidia involucrata HOM05D003715 ORTHO05D003958 1.4e-13 80.9 144 38.2
Medtr7g085790 Medicago truncatula HOM05D003715 ORTHO05D003958 1.4e-13 80.9 107 41.1
vmacro12564 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 1.4e-13 80.9 241 33.2
Eucgr.K01502 Eucalyptus grandis HOM05D003715 ORTHO05D003958 1.9e-13 80.5 104 46.2
Psat3g088760 Pisum sativum HOM05D003715 ORTHO05D003958 3.2e-13 79.7 164 37.2
SGA_v2.0_scaffold94G28404 Striga asiatica HOM05D003715 ORTHO05D003958 3.2e-13 79.7 88 48.9
Zm00001eb160980 Zea mays HOM05D015210 ORTHO05D003958 3.2e-13 79.7 162 39.5
Prupe.7G006100 Prunus persica HOM05D003715 ORTHO05D003958 4.2e-13 79.3 97 41.2
Zm00001eb160900 Zea mays HOM05D015210 ORTHO05D003958 4.2e-13 79.3 219 38.8
Zm00001eb160910 Zea mays HOM05D015210 ORTHO05D003958 4.2e-13 79.3 219 39.3
Zm00001eb160960 Zea mays HOM05D015210 ORTHO05D003958 4.2e-13 79.3 95 52.6
BcaB08g36703 Brassica carinata HOM05D003715 ORTHO05D003958 5.4e-13 79.0 111 44.1
Oeu024502.1 Olea europaea HOM05D003715 ORTHO05D003958 5.4e-13 79.0 168 36.9
BolC2t06880H Brassica oleracea HOM05D003715 ORTHO05D003958 7.1e-13 78.6 124 40.3
AT3G03870 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 9.3e-13 78.2 176 33.5
BcaB01g05177 Brassica carinata HOM05D003715 ORTHO05D003958 9.3e-13 78.2 262 30.2
BcaC05g30288 Brassica carinata HOM05D003715 ORTHO05D003958 9.3e-13 78.2 88 46.6
C03p10110 Brassica napus HOM05D003715 ORTHO05D003958 9.3e-13 78.2 262 30.2
BolC3t13497H Brassica oleracea HOM05D003715 ORTHO05D003958 9.3e-13 78.2 262 30.2
BraA03t10190Z Brassica rapa HOM05D003715 ORTHO05D003958 9.3e-13 78.2 262 30.2
ECA238G2879 Erigeron canadensis HOM05D003715 ORTHO05D003958 9.3e-13 78.2 207 31.4
THA.LOC104820776 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 9.3e-13 78.2 153 34.0
BcaB05g23302 Brassica carinata HOM05D003715 ORTHO05D003958 1.2e-12 77.8 110 43.6
A05p43520 Brassica napus HOM05D003715 ORTHO05D003958 1.2e-12 77.8 226 31.4
C02p09710 Brassica napus HOM05D003715 ORTHO05D003958 1.2e-12 77.8 124 40.3
CARHR077990 Cardamine hirsuta HOM05D003715 ORTHO05D003958 1.6e-12 77.4 257 28.8
AL3G13760 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 2.7e-12 76.6 177 32.2
A03p08670 Brassica napus HOM05D003715 ORTHO05D003958 2.7e-12 76.6 268 29.9
Lsat_1_v5_gn_6_37461 Lactuca sativa HOM05D003715 ORTHO05D003958 2.7e-12 76.6 138 34.8
Peaxi162Scf00003g04827 Petunia axillaris HOM05D003715 ORTHO05D003958 2.7e-12 76.6 219 32.4
Carub.0006s1642 Capsella rubella HOM05D003715 ORTHO05D003958 3.5e-12 76.3 153 36.6
TAR633G2492 Trochodendron aralioides HOM05D003715 ORTHO05D003958 3.5e-12 76.3 93 44.1
FAN23G0877 Fragaria x ananassa HOM05D003715 ORTHO05D003958 4.6e-12 75.9 107 42.1
Lalb_Chr22g0359081 Lupinus albus HOM05D003715 ORTHO05D003958 4.6e-12 75.9 209 32.5
Nitab4.5_0002769g0040 Nicotiana tabacum HOM05D003715 ORTHO05D003958 4.6e-12 75.9 171 35.7
BolC9t58728H Brassica oleracea HOM05D003715 ORTHO05D003958 6.0e-12 75.5 180 33.9
HPP92_014229 Vanilla planifolia HOM05D035551 ORTHO05D003958 6.0e-12 75.5 234 35.5
A02p04750 Brassica napus HOM05D003715 ORTHO05D003958 1.0e-11 74.7 179 33.0
MD14G1003600 Malus domestica HOM05D003715 ORTHO05D003958 1.0e-11 74.7 92 42.4
Sp6g26180 Schrenkiella parvula HOM05D003715 ORTHO05D003958 1.0e-11 74.7 183 33.3
FAN26G1768 Fragaria x ananassa HOM05D003715 ORTHO05D003958 1.3e-11 74.3 103 41.7
ATR0737G080 Amborella trichopoda HOM05D003715 ORTHO05D003958 1.8e-11 73.9 184 31.0
BcaB01g06399 Brassica carinata HOM05D003715 ORTHO05D003958 1.8e-11 73.9 184 33.2
Zm00001eb160970 Zea mays HOM05D015210 ORTHO05D003958 1.8e-11 73.9 219 36.1
BcaC03g13579 Brassica carinata HOM05D003715 ORTHO05D003958 2.3e-11 73.6 124 38.7
FvH4_1g28230 Fragaria vesca HOM05D003715 ORTHO05D003958 2.3e-11 73.6 103 40.8
MD12G1005100 Malus domestica HOM05D003715 ORTHO05D003958 2.3e-11 73.6 92 45.7
Aa31LG11G11470 Aethionema arabicum HOM05D003715 ORTHO05D003958 3.0e-11 73.2 225 31.6
CARHR194940 Cardamine hirsuta HOM05D003715 ORTHO05D003958 3.0e-11 73.2 152 37.5
AL6G29330 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 3.9e-11 72.8 163 36.8
AT5G18130 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 3.9e-11 72.8 207 33.8
C09p58840 Brassica napus HOM05D003715 ORTHO05D003958 3.9e-11 72.8 180 34.4
HanXRQChr13g0397871 Helianthus annuus HOM05D003715 ORTHO05D003958 3.9e-11 72.8 141 33.3
Sed0002226 Sechium edule HOM05D003715 ORTHO05D003958 3.9e-11 72.8 140 35.0
TAR369G0375 Trochodendron aralioides HOM05D003715 ORTHO05D003958 5.1e-11 72.4 66 48.5
Nitab4.5_0001079g0120 Nicotiana tabacum HOM05D003715 ORTHO05D003958 6.7e-11 72.0 220 28.6
BcaC05g29901 Brassica carinata HOM05D003715 ORTHO05D003958 8.7e-11 71.6 172 34.3
A10p21370 Brassica napus HOM05D003715 ORTHO05D003958 8.7e-11 71.6 180 33.9
BolC5t34973H Brassica oleracea HOM05D003715 ORTHO05D003958 8.7e-11 71.6 172 34.3
BraA10t44200Z Brassica rapa HOM05D003715 ORTHO05D003958 8.7e-11 71.6 180 33.9
CDE02G4343 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 1.1e-10 71.2 122 42.6
BraA02t05434Z Brassica rapa HOM05D003715 ORTHO05D003958 1.9e-10 70.5 179 31.3
EL10Ac3g06828 Beta vulgaris HOM05D003715 ORTHO05D003958 2.5e-10 70.1 169 30.2
Nitab4.5_0000358g0150 Nicotiana tabacum HOM05D003715 ORTHO05D003958 3.3e-10 69.7 210 32.4
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 4.3e-10 69.3 167 27.5
ECA233G0839 Erigeron canadensis HOM05D003715 ORTHO05D003958 7.4e-10 68.6 142 31.7
Zm00001eb061540 Zea mays HOM05D003715 ORTHO05D003958 9.6e-10 68.2 224 35.3
Lalb_Chr14g0364551 Lupinus albus HOM05D003715 ORTHO05D003958 1.3e-09 67.8 142 35.2
FAN28G3019 Fragaria x ananassa HOM05D003715 ORTHO05D003958 1.6e-09 67.4 88 42.0
Zm00001eb160940 Zea mays HOM05D015210 ORTHO05D003958 2.1e-09 67.0 146 40.4
HanXRQChr02g0054571 Helianthus annuus HOM05D003715 ORTHO05D003958 1.1e-08 64.7 108 38.9
Nitab4.5_0000394g0140 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.4e-08 64.3 151 36.4
PSO384G3057 Papaver somniferum HOM05D003715 ORTHO05D003958 1.8e-08 63.9 92 41.3
Actinidia38611 Actinidia chinensis HOM05D003715 ORTHO05D003958 3.1e-08 63.2 231 28.1
Duzib128G0041 Durio zibethinus HOM05D003715 ORTHO05D003958 3.1e-08 63.2 141 34.8
SalBow1G3164 Salvia bowleyana HOM05D003715 ORTHO05D003958 9.0e-08 61.6 218 27.5
Aqoxy1G00472 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 1.2e-07 61.2 254 28.3
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 1.5e-07 60.8 64 50.0
PSO782G0808 Papaver somniferum HOM05D003715 ORTHO05D003958 2.0e-07 60.5 94 38.3
Rhsim04G0091400 Rhododendron simsii HOM05D006013 ORTHO05D007383 2.0e-07 60.5 112 41.1
SEGI_20586 Sequoiadendron giganteum HOM05D003715 ORTHO05D003958 2.0e-07 60.5 118 38.1
vmacro09135 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 5.8e-07 58.9 243 29.2
Nn7g35866 Nelumbo nucifera HOM05D003715 ORTHO05D003958 2.2e-06 57.0 164 29.9
THA.LOC104802870 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 4.9e-06 55.8 87 39.1
Aa31LG5G14450 Aethionema arabicum HOM05D003715 ORTHO05D003958 8.4e-06 55.1 154 30.5


User provided reference genes

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