Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0803700 Oryza sativa ssp. japonica HOM05D002342 ORTHO05D002407 7.6e-236 820.1 406 100.0
Zm00001eb061370 Zea mays HOM05D002342 ORTHO05D002407 8.9e-160 567.4 387 71.3
MBI04_g21151_MAGBIO Magnolia biondii HOM05D002342 ORTHO05D002407 1.5e-103 380.6 387 49.6
TAR365G0670 Trochodendron aralioides HOM05D002342 ORTHO05D002407 1.0e-102 377.9 394 49.5
TAR365G0690 Trochodendron aralioides HOM05D002342 ORTHO05D002407 1.7e-102 377.1 394 49.2
Actinidia23411 Actinidia chinensis HOM05D002342 ORTHO05D002407 1.3e-97 360.9 390 48.2
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 4.1e-96 355.9 390 47.4
QL05p014183 Quercus lobata HOM05D002342 ORTHO05D002407 2.6e-95 353.2 395 45.8
GSVIVG01020920001 Vitis vinifera HOM05D002342 ORTHO05D002407 5.9e-95 352.1 394 45.7
Nn1g07933 Nelumbo nucifera HOM05D002342 ORTHO05D002407 7.7e-95 351.7 393 46.3
Atru.chr4.1618 Acer truncatum HOM05D002342 ORTHO05D002407 3.8e-94 349.4 393 45.3
CSS0000956 Camellia sinensis var. sinensis HOM05D002342 ORTHO05D002407 6.5e-94 348.6 392 45.7
TWI09G0668 Tripterygium wilfordii HOM05D002342 ORTHO05D002407 3.2e-93 346.3 392 45.2
Dinv38212 Davidia involucrata HOM05D002342 ORTHO05D002407 4.2e-93 345.9 405 44.2
PSO063G4028 Papaver somniferum HOM05D002342 ORTHO05D002407 7.2e-93 345.1 393 43.5
Aqoxy2G03980 Aquilegia oxysepala HOM05D002342 ORTHO05D002407 1.2e-92 344.4 390 44.4
Atru.chr4.1622 Acer truncatum HOM05D002342 ORTHO05D002407 6.1e-92 342.0 390 44.4
Haze_11627 Corylus avellana HOM05D002342 ORTHO05D002407 6.1e-92 342.0 390 46.7
Cfa014941 Carpinus fangiana HOM05D002342 ORTHO05D002407 8.0e-92 341.7 394 45.9
Atru.chr4.1627 Acer truncatum HOM05D002342 ORTHO05D002407 1.0e-91 341.3 396 44.2
PSO017G5596 Papaver somniferum HOM05D002342 ORTHO05D002407 1.0e-91 341.3 393 43.3
Lj6C522G10 Lonicera japonica HOM05D002342 ORTHO05D002407 2.3e-91 340.1 392 45.4
QL05p014435 Quercus lobata HOM05D002342 ORTHO05D002407 2.3e-91 340.1 393 44.8
Ca_17971_v3 Cicer arietinum L. HOM05D002342 ORTHO05D002407 6.7e-91 338.6 396 43.9
QL05p014243 Quercus lobata HOM05D002342 ORTHO05D002407 1.5e-90 337.4 393 44.5
Potri.001G317200 Populus trichocarpa HOM05D002342 ORTHO05D002407 2.6e-90 336.7 391 43.7
Dinv27217 Davidia involucrata HOM05D002342 ORTHO05D002407 4.4e-90 335.9 413 42.4
Rhsim09G0058500 Rhododendron simsii HOM05D002342 ORTHO05D002407 4.4e-90 335.9 395 43.8
Lj4g0001754 Lotus japonicus HOM05D002342 ORTHO05D002407 5.7e-90 335.5 396 43.9
arahy.Tifrunner.gnm1.ann1.ZGTC82 Arachis hypogaea HOM05D002342 ORTHO05D002407 1.8e-88 330.5 399 43.4
Lj6C525G6 Lonicera japonica HOM05D002342 ORTHO05D002407 1.8e-88 330.5 391 43.7
Lj6C525G9 Lonicera japonica HOM05D002342 ORTHO05D002407 4.1e-88 329.3 391 43.7
Thecc.04G199700 Theobroma cacao HOM05D002342 ORTHO05D002407 7.0e-88 328.6 395 41.8
TPR.G11869 Trifolium pratense HOM05D002342 ORTHO05D002407 7.0e-88 328.6 389 44.7
Prupe.1G159200 Prunus persica HOM05D002342 ORTHO05D002407 9.1e-88 328.2 393 44.0
Migut.N01843 Erythranthe guttata HOM05D002342 ORTHO05D002407 1.2e-87 327.8 391 43.0
Gohir.A03G095600 Gossypium hirsutum HOM05D002342 ORTHO05D002407 1.6e-87 327.4 412 41.5
Duzib212G0344 Durio zibethinus HOM05D002342 ORTHO05D002407 2.0e-87 327.0 394 42.9
Medtr8g085280 Medicago truncatula HOM05D002342 ORTHO05D002407 3.5e-87 326.2 395 44.1
Gorai.005G129600 Gossypium raimondii HOM05D002342 ORTHO05D002407 4.5e-87 325.9 412 41.3
HPP92_028111 Vanilla planifolia HOM05D002342 ORTHO05D002407 5.9e-87 325.5 392 42.9
Lalb_Chr12g0205541 Lupinus albus HOM05D002342 ORTHO05D002407 7.7e-87 325.1 397 43.1
Lj6C526T11 Lonicera japonica HOM05D002342 ORTHO05D002407 1.0e-86 324.7 391 43.0
Gohir.D02G113900 Gossypium hirsutum HOM05D002342 ORTHO05D002407 1.3e-86 324.3 412 41.0
Manes.03G146000 Manihot esculenta HOM05D002342 ORTHO05D002407 1.7e-86 323.9 392 42.6
HPP92_003865 Vanilla planifolia HOM05D002342 ORTHO05D002407 2.9e-86 323.2 390 43.1
MD04G1012900 Malus domestica HOM05D002342 ORTHO05D002407 5.0e-86 322.4 393 44.5
Eucgr.H02741 Eucalyptus grandis HOM05D002342 ORTHO05D002407 3.2e-85 319.7 391 43.2
Prupe.1G159000 Prunus persica HOM05D002342 ORTHO05D002407 4.2e-85 319.3 392 44.6
CAN.G1333.8 Capsicum annuum HOM05D002342 ORTHO05D002407 5.5e-85 318.9 389 41.4
PGR083G1386 Punica granatum HOM05D002342 ORTHO05D002407 5.5e-85 318.9 390 43.3
CiPaw.01G119000 Carya illinoinensis HOM05D002342 ORTHO05D002407 7.2e-85 318.5 367 44.4
Glyma.08G111400 Glycine max HOM05D002342 ORTHO05D002407 7.2e-85 318.5 396 42.4
PSO017G1666 Papaver somniferum HOM05D002342 ORTHO05D002407 9.4e-85 318.2 394 42.4
Phvul.003G291200 Phaseolus vulgaris HOM05D002342 ORTHO05D002407 9.4e-85 318.2 389 41.9
PSO063G7363 Papaver somniferum HOM05D002342 ORTHO05D002407 1.6e-84 317.4 394 42.6
CANSAT78G2520 Cannabis sativa HOM05D002342 ORTHO05D002407 3.6e-84 316.2 394 42.6
Migut.N00402 Erythranthe guttata HOM05D002342 ORTHO05D002407 3.6e-84 316.2 388 42.0
Lj6C517T2 Lonicera japonica HOM05D002342 ORTHO05D002407 3.6e-84 316.2 403 42.7
ECA233G4700 Erigeron canadensis HOM05D002342 ORTHO05D002407 6.1e-84 315.5 389 42.2
RcHm_v2.0_Chr6g0275261 Rosa chinensis HOM05D002342 ORTHO05D002407 6.1e-84 315.5 393 41.5
Nitab4.5_0000401g0100 Nicotiana tabacum HOM05D002342 ORTHO05D002407 1.4e-83 314.3 389 41.1
Hund05344 Selenicereus undatus HOM05D002342 ORTHO05D002407 1.4e-83 314.3 391 40.9
HanXRQChr02g0059031 Helianthus annuus HOM05D002342 ORTHO05D002407 2.3e-83 313.5 391 41.7
HanXRQChr16g0498001 Helianthus annuus HOM05D002342 ORTHO05D002407 2.3e-83 313.5 398 40.7
MD04G1012800 Malus domestica HOM05D002342 ORTHO05D002407 2.3e-83 313.5 391 44.0
Lsat_1_v5_gn_6_60921 Lactuca sativa HOM05D002342 ORTHO05D002407 3.0e-83 313.2 391 42.2
Peaxi162Scf00047g00342 Petunia axillaris HOM05D002342 ORTHO05D002407 4.0e-83 312.8 392 41.1
Cc03_g08030 Coffea canephora HOM05D002342 ORTHO05D002407 5.2e-83 312.4 394 42.9
Migut.N01844 Erythranthe guttata HOM05D002342 ORTHO05D002407 5.2e-83 312.4 391 40.9
FAN24G1108 Fragaria x ananassa HOM05D002342 ORTHO05D002407 5.2e-83 312.4 393 41.2
FAN15G0433 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.2e-82 311.2 394 40.9
FvH4_2g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 1.5e-82 310.8 393 41.0
FAN12G2750 Fragaria x ananassa HOM05D002342 ORTHO05D002407 2.0e-82 310.5 390 41.0
BraA08t32682Z Brassica rapa HOM05D002342 ORTHO05D002407 2.6e-82 310.1 387 40.6
Lj6C523G2 Lonicera japonica HOM05D002342 ORTHO05D002407 3.3e-82 309.7 390 42.8
Sc13g0000230 Simmondsia chinensis HOM05D002342 ORTHO05D002407 4.4e-82 309.3 391 41.9
Aa31LG9G3890 Aethionema arabicum HOM05D002342 ORTHO05D002407 7.5e-82 308.5 387 40.1
A08p06660 Brassica napus HOM05D002342 ORTHO05D002407 7.5e-82 308.5 387 40.3
FAN07G2373 Fragaria x ananassa HOM05D002342 ORTHO05D002407 9.7e-82 308.1 390 40.8
Solyc09g092100.4 Solanum lycopersicum HOM05D002342 ORTHO05D002407 9.7e-82 308.1 394 39.6
Lsat_1_v5_gn_6_60880 Lactuca sativa HOM05D002342 ORTHO05D002407 2.2e-81 307.0 388 41.5
Lj6A523T33 Lonicera japonica HOM05D002342 ORTHO05D002407 2.2e-81 307.0 377 44.3
DCAR_002789 Daucus carota HOM05D002342 ORTHO05D002407 2.8e-81 306.6 390 41.3
FAN22G0412 Fragaria x ananassa HOM05D002342 ORTHO05D002407 3.7e-81 306.2 390 40.8
AT4G13750 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 4.8e-81 305.8 385 40.3
Sopen09g034970 Solanum pennellii HOM05D002342 ORTHO05D002407 4.8e-81 305.8 394 39.3
THA.LOC104804807 Tarenaya hassleriana HOM05D002342 ORTHO05D002407 6.3e-81 305.4 385 41.3
EL10Ac3g07477 Beta vulgaris HOM05D002342 ORTHO05D002407 1.4e-80 304.3 389 42.4
AL7G42760 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 1.8e-80 303.9 387 40.1
BcaB04g17657 Brassica carinata HOM05D002342 ORTHO05D002407 1.8e-80 303.9 387 39.3
BcaC07g37335 Brassica carinata HOM05D002342 ORTHO05D002407 1.8e-80 303.9 387 39.8
C08p07730 Brassica napus HOM05D002342 ORTHO05D002407 1.8e-80 303.9 387 39.8
BolC8t47622H Brassica oleracea HOM05D002342 ORTHO05D002407 1.8e-80 303.9 387 39.8
Cpa.g.sc1159.3 Carica papaya HOM05D002342 ORTHO05D002407 2.4e-80 303.5 388 42.0
Thhalv10024181m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 5.3e-80 302.4 387 40.1
Sp7g11520 Schrenkiella parvula HOM05D002342 ORTHO05D002407 9.1e-80 301.6 387 40.1
RcHm_v2.0_Chr4g0414351 Rosa chinensis HOM05D002342 ORTHO05D002407 2.0e-79 300.4 389 40.4
Sabra16G0200600 Salix brachista HOM05D002342 ORTHO05D002407 2.7e-79 300.1 478 36.0
Carub.0007s2871 Capsella rubella HOM05D002342 ORTHO05D002407 3.5e-79 299.7 386 39.6
ECA233G6204 Erigeron canadensis HOM05D002342 ORTHO05D002407 4.5e-79 299.3 390 40.5
Eucgr.H02762 Eucalyptus grandis HOM05D002342 ORTHO05D002407 4.5e-79 299.3 393 40.2
CiPaw.01G119300 Carya illinoinensis HOM05D002342 ORTHO05D002407 7.7e-79 298.5 412 39.8
Eucgr.H02759 Eucalyptus grandis HOM05D002342 ORTHO05D002407 2.2e-78 297.0 391 41.2
Oeu045313.1 Olea europaea HOM05D002342 ORTHO05D002407 2.2e-78 297.0 431 40.6
Eucgr.H02755 Eucalyptus grandis HOM05D002342 ORTHO05D002407 2.9e-78 296.6 391 40.4
CsaV3_3G010890 Cucumis sativus L. HOM05D002342 ORTHO05D002407 6.5e-78 295.4 409 40.1
Oeu055768.2 Olea europaea HOM05D002342 ORTHO05D002407 1.1e-77 294.7 458 36.7
MD04G1013100 Malus domestica HOM05D002342 ORTHO05D002407 1.5e-77 294.3 352 45.2
Ah.14g086370 Amaranthus hybridus HOM05D002342 ORTHO05D002407 1.9e-77 293.9 391 39.9
ATR0829G112 Amborella trichopoda HOM05D002342 ORTHO05D002407 3.2e-77 293.1 402 40.5
MELO3C006307.2 Cucumis melo HOM05D002342 ORTHO05D002407 4.2e-77 292.7 393 40.5
CARHR219530 Cardamine hirsuta HOM05D002342 ORTHO05D002407 1.2e-76 291.2 387 40.3
FvH4_4g13660 Fragaria vesca HOM05D002342 ORTHO05D002407 1.2e-76 291.2 390 39.7
Haze_11629 Corylus avellana HOM05D002342 ORTHO05D002407 1.0e-75 288.1 497 35.8
ECA246G4185 Erigeron canadensis HOM05D002342 ORTHO05D002407 1.0e-75 288.1 392 39.0
Eucgr.H02757 Eucalyptus grandis HOM05D002342 ORTHO05D002407 1.0e-75 288.1 393 39.7
SGA_v2.0_scaffold31G12585 Striga asiatica HOM05D002342 ORTHO05D002407 1.8e-75 287.3 432 36.1
Sed0007147 Sechium edule HOM05D002342 ORTHO05D002407 4.0e-75 286.2 393 39.4
Sed0020750 Sechium edule HOM05D002342 ORTHO05D002407 8.8e-75 285.0 393 38.9
AUR62020836 Chenopodium quinoa HOM05D002342 ORTHO05D002407 1.7e-73 280.8 392 38.8
ClCG05G003260 Citrullus lanatus HOM05D002342 ORTHO05D002407 3.7e-73 279.6 432 36.8
HanXRQChr11g0339061 Helianthus annuus HOM05D002342 ORTHO05D002407 6.3e-73 278.9 387 41.3
vmacro00454 Vaccinium macrocarpon HOM05D002342 ORTHO05D002407 2.4e-72 276.9 330 43.0
ECA233G4033 Erigeron canadensis HOM05D002342 ORTHO05D002407 7.7e-71 271.9 391 37.3
AUR62018583 Chenopodium quinoa HOM05D002342 ORTHO05D002407 2.9e-70 270.0 392 38.0
Hma1.2p1_0383F.1_g140370 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 3.3e-69 266.5 328 43.0
Psat7g074440 Pisum sativum HOM05D002342 ORTHO05D002407 4.0e-67 259.6 304 44.1
SHI00031 Sapria himalayana HOM05D002342 ORTHO05D002407 1.4e-64 251.1 308 43.2
Eucgr.A01634 Eucalyptus grandis HOM05D002342 ORTHO05D002407 5.9e-63 245.7 308 40.6
CAN.G1333.4 Capsicum annuum HOM05D002342 ORTHO05D002407 1.5e-61 241.1 329 39.5
VMungo1127G2260 Vigna mungo HOM05D002342 ORTHO05D002407 1.2e-60 238.0 300 39.3
SEGI_10632 Sequoiadendron giganteum HOM05D002342 ORTHO05D002407 7.5e-58 228.8 396 35.4
HPP92_020883 Vanilla planifolia HOM05D002342 ORTHO05D002407 3.7e-57 226.5 319 38.6
unitig_8.g4999 Utricularia gibba HOM05D002342 ORTHO05D002407 5.4e-56 222.6 390 33.8
Eucgr.H02754 Eucalyptus grandis HOM05D002342 ORTHO05D002407 2.3e-54 217.2 293 38.9
Lj6A516T55 Lonicera japonica HOM05D002342 ORTHO05D002407 6.6e-54 215.7 321 38.3
COL.COLO4_20180 Corchorus olitorius HOM05D002342 ORTHO05D002407 1.1e-53 214.9 243 42.0
RcHm_v2.0_Chr7g0213881 Rosa chinensis HOM05D002342 ORTHO05D002407 1.5e-53 214.5 332 35.5
Hma1.2p1_0383F.1_g140560 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 1.1e-51 208.4 398 33.4
Mapoly0105s0052 Marchantia polymorpha HOM05D002342 ORTHO05D002407 6.4e-49 199.1 391 32.5
Pp3c21_20720 Physcomitrium patens HOM05D002342 ORTHO05D002407 1.9e-45 187.6 402 30.6
Eucgr.H02751 Eucalyptus grandis HOM05D002342 ORTHO05D002407 8.1e-44 182.2 257 37.7
Nitab4.5_0006215g0010 Nicotiana tabacum HOM05D002342 ORTHO05D002407 1.2e-42 178.3 391 30.9
SMO337G0030 Selaginella moellendorffii HOM05D002342 ORTHO05D002407 1.7e-41 174.5 414 30.0
CAN.G1333.6 Capsicum annuum HOM05D002342 ORTHO05D002407 1.4e-40 171.4 240 40.8
QL05p014631 Quercus lobata HOM05D002342 ORTHO05D002407 2.4e-40 170.6 222 42.8
Lj6A517T28 Lonicera japonica HOM05D002342 ORTHO05D002407 1.2e-39 168.3 204 42.6
AagrBONN_evm.TU.Sc2ySwM_228.1729 Anthoceros agrestis HOM05D002342 ORTHO05D002407 1.6e-39 167.9 413 30.3
Lsat_1_v5_gn_8_141841 Lactuca sativa HOM05D002342 ORTHO05D002407 1.8e-35 154.5 190 41.1
Lsat_1_v5_gn_6_78720 Lactuca sativa HOM05D002342 ORTHO05D002407 2.4e-35 154.1 187 42.2
Lj6A517T27 Lonicera japonica HOM05D002342 ORTHO05D002407 5.4e-32 142.9 207 39.6
Lsat_1_v5_gn_4_177540 Lactuca sativa HOM05D002342 ORTHO05D002407 8.7e-30 135.6 174 39.7
HanXRQChr16g0515551 Helianthus annuus HOM05D002342 ORTHO05D002407 3.1e-27 127.1 187 39.0
Ciclev10004121m.g Citrus clementina HOM05D002342 ORTHO05D002407 4.9e-25 119.8 171 38.6
HanXRQChr16g0515531 Helianthus annuus HOM05D000002 ORTHO05D000001 6.9e-19 99.4 163 35.6
Actinidia38751 Actinidia chinensis HOM05D002342 ORTHO05D002407 1.9e-16 91.3 138 37.7
AL5G12310 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 2.3e-14 84.3 118 34.7
TAR365G0903 Trochodendron aralioides HOM05D002342 ORTHO05D002407 8.7e-14 82.4 65 50.8
arahy.Tifrunner.gnm1.ann1.ICL3YR Arachis hypogaea HOM05D002342 ORTHO05D002407 1.6e-12 78.2 101 44.6
Cpa.g.c47077 Carica papaya HOM05D002342 ORTHO05D002407 2.1e-12 77.8 86 38.4
SHI34692 Sapria himalayana HOM05D000024 ORTHO05D000006 1.8e-11 74.7 161 31.1
CBR_g6414 Chara braunii HOM05D002342 ORTHO05D002407 5.3e-11 73.2 443 20.3
Haze_11628 Corylus avellana HOM05D002342 ORTHO05D002407 5.8e-10 69.7 72 52.8
Nitab4.5_0006964g0030 Nicotiana tabacum HOM05D002342 ORTHO05D002407 1.3e-09 68.6 75 44.0
Lj4A826T54 Lonicera japonica HOM05D002180 ORTHO05D001339 8.4e-09 65.9 69 42.0
Eucgr.H02767 Eucalyptus grandis HOM05D002342 ORTHO05D002407 7.1e-08 62.8 61 52.5
PGSC0003DMG402026419 Solanum tuberosum HOM05D002342 ORTHO05D002407 7.1e-08 62.8 70 38.6
HPP92_028130 Vanilla planifolia HOM05D002342 ORTHO05D002407 1.2e-07 62.0 57 52.6
Eucgr.H02765 Eucalyptus grandis HOM05D002342 ORTHO05D002407 2.7e-07 60.8 88 33.0
AUR62018579 Chenopodium quinoa HOM05D002342 ORTHO05D002407 7.9e-07 59.3 66 43.9
Eucgr.A01635 Eucalyptus grandis HOM05D002342 ORTHO05D002407 3.9e-06 57.0 60 50.0


User provided reference genes

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