Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0801700 Oryza sativa ssp. japonica HOM05D006471 ORTHO05D008157 2.1e-222 775.4 392 100.0
Zm00001eb061200 Zea mays HOM05D006471 ORTHO05D008157 1.9e-151 539.7 394 73.9
HPP92_017784 Vanilla planifolia HOM05D006471 ORTHO05D008157 5.1e-96 355.5 342 54.4
ATR0665G473 Amborella trichopoda HOM05D006471 ORTHO05D008157 3.3e-95 352.8 328 54.9
CDE02G4670 Ceratophyllum demersum HOM05D006471 ORTHO05D008157 1.8e-93 347.1 295 58.3
MBI06_g44273_MAGBIO Magnolia biondii HOM05D006471 ORTHO05D008157 3.1e-93 346.3 277 63.5
PGSC0003DMG400011512 Solanum tuberosum HOM05D006471 ORTHO05D008157 3.8e-91 339.3 269 62.1
Lalb_Chr06g0163931 Lupinus albus HOM05D006471 ORTHO05D008157 1.1e-90 337.8 325 55.4
Psat6g234000 Pisum sativum HOM05D006471 ORTHO05D008157 1.9e-90 337.0 342 52.9
Lj3A846G60 Lonicera japonica HOM05D006471 ORTHO05D008157 1.6e-89 334.0 271 60.1
GSVIVG01034416001 Vitis vinifera HOM05D006471 ORTHO05D008157 3.6e-89 332.8 272 60.3
Sopen04g004170 Solanum pennellii HOM05D006471 ORTHO05D008157 4.7e-89 332.4 269 61.3
Thhalv10013886m.g Eutrema salsugineum HOM05D006471 ORTHO05D008157 7.9e-89 331.6 272 59.2
Solyc04g008990.3 Solanum lycopersicum HOM05D006471 ORTHO05D008157 7.9e-89 331.6 269 61.3
Migut.L00869 Erythranthe guttata HOM05D006471 ORTHO05D008157 1.0e-88 331.3 276 60.5
CANSAT78G1799 Cannabis sativa HOM05D006471 ORTHO05D008157 1.8e-88 330.5 275 60.0
Hma1.2p1_0044F.1_g026290 Hydrangea macrophylla HOM05D006471 ORTHO05D008157 2.3e-88 330.1 274 61.7
Nitab4.5_0005997g0050 Nicotiana tabacum HOM05D006471 ORTHO05D008157 3.0e-88 329.7 314 55.7
Ca_11258_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 3.9e-88 329.3 273 60.8
TAR628G0373 Trochodendron aralioides HOM05D006471 ORTHO05D008157 3.9e-88 329.3 283 59.7
Duzib248G0471 Durio zibethinus HOM05D000200 ORTHO05D001546 5.2e-88 328.9 275 61.1
TPR.G4059 Trifolium pratense HOM05D006471 ORTHO05D008157 5.2e-88 328.9 273 59.7
Peaxi162Scf00681g00221 Petunia axillaris HOM05D006471 ORTHO05D008157 8.8e-88 328.2 269 59.9
Sabra07G0063800 Salix brachista HOM05D006471 ORTHO05D008157 8.8e-88 328.2 278 62.6
CsaV3_5G029010 Cucumis sativus L. HOM05D006471 ORTHO05D008157 1.1e-87 327.8 289 58.1
Gorai.012G135400 Gossypium raimondii HOM05D006471 ORTHO05D008157 1.5e-87 327.4 275 60.0
CAN.G274.15 Capsicum annuum HOM05D006471 ORTHO05D008157 2.0e-87 327.0 312 54.8
Lj5g0013377 Lotus japonicus HOM05D006471 ORTHO05D008157 2.0e-87 327.0 296 58.1
Actinidia04343 Actinidia chinensis HOM05D006471 ORTHO05D008157 2.6e-87 326.6 335 52.2
Manes.04G162800 Manihot esculenta HOM05D006471 ORTHO05D008157 2.6e-87 326.6 275 59.3
Medtr1g114560 Medicago truncatula HOM05D006471 ORTHO05D008157 2.6e-87 326.6 324 53.7
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 4.4e-87 325.9 281 59.4
Gohir.D04G148900 Gossypium hirsutum HOM05D006471 ORTHO05D008157 5.7e-87 325.5 275 59.6
Rhsim12G0193800 Rhododendron simsii HOM05D006471 ORTHO05D008157 5.7e-87 325.5 306 55.9
COL.COLO4_33107 Corchorus olitorius HOM05D006471 ORTHO05D008157 9.7e-87 324.7 275 60.7
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 1.3e-86 324.3 277 58.5
CSS0032634 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 1.3e-86 324.3 273 60.1
CARHR204730 Cardamine hirsuta HOM05D006471 ORTHO05D008157 1.3e-86 324.3 269 59.9
Gohir.A04G109424 Gossypium hirsutum HOM05D006471 ORTHO05D008157 1.3e-86 324.3 275 59.6
Potri.007G075500 Populus trichocarpa HOM05D006471 ORTHO05D008157 1.3e-86 324.3 297 57.2
Nn8g40194 Nelumbo nucifera HOM05D006471 ORTHO05D008157 1.7e-86 323.9 269 62.1
RcHm_v2.0_Chr4g0446941 Rosa chinensis HOM05D006471 ORTHO05D008157 1.7e-86 323.9 279 59.1
CiPaw.05G172000 Carya illinoinensis HOM05D006471 ORTHO05D008157 2.2e-86 323.6 273 58.2
Nitab4.5_0004979g0070 Nicotiana tabacum HOM05D006471 ORTHO05D008157 2.2e-86 323.6 289 57.4
CSS0035224 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 3.7e-86 322.8 273 59.3
Thecc.02G154800 Theobroma cacao HOM05D006471 ORTHO05D008157 3.7e-86 322.8 275 59.6
Ciclev10031833m.g Citrus clementina HOM05D006471 ORTHO05D008157 6.3e-86 322.0 275 58.5
PSO782G0560 Papaver somniferum HOM05D006471 ORTHO05D008157 6.3e-86 322.0 323 53.6
vmacro16923 Vaccinium macrocarpon HOM05D006471 ORTHO05D008157 8.2e-86 321.6 274 57.3
AT5G23330 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 2.4e-85 320.1 274 58.4
VMungo0720G2382 Vigna mungo HOM05D006471 ORTHO05D008157 2.4e-85 320.1 296 58.1
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 3.1e-85 319.7 250 62.8
Cfa008776 Carpinus fangiana HOM05D006471 ORTHO05D008157 3.1e-85 319.7 273 59.0
Glyma.10G286400 Glycine max HOM05D006471 ORTHO05D008157 3.1e-85 319.7 296 56.4
THA.LOC104800739 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 3.1e-85 319.7 273 58.6
BcaB01g05611 Brassica carinata HOM05D006471 ORTHO05D008157 5.3e-85 318.9 272 57.7
Carub.0006s0724 Capsella rubella HOM05D006471 ORTHO05D008157 7.0e-85 318.5 270 58.5
Lsat_1_v5_gn_0_15460 Lactuca sativa HOM05D006471 ORTHO05D008157 7.0e-85 318.5 319 53.6
SalBow2G1748 Salvia bowleyana HOM05D006471 ORTHO05D008157 7.0e-85 318.5 343 52.2
Phvul.007G014500 Phaseolus vulgaris HOM05D006471 ORTHO05D008157 9.1e-85 318.2 296 58.4
TWI74G1585 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 9.1e-85 318.2 275 57.5
PSO170G1614 Papaver somniferum HOM05D006471 ORTHO05D008157 1.6e-84 317.4 273 59.3
Sp6g34600 Schrenkiella parvula HOM05D006471 ORTHO05D008157 1.6e-84 317.4 272 57.7
TWI77G0721 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 2.0e-84 317.0 281 58.4
Atru.chr11.1240 Acer truncatum HOM05D006471 ORTHO05D008157 2.6e-84 316.6 277 57.8
DCAR_002605 Daucus carota HOM05D000200 ORTHO05D001546 2.6e-84 316.6 250 62.0
AL6G18780 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 4.5e-84 315.8 272 57.7
Eucgr.G02586 Eucalyptus grandis HOM05D006471 ORTHO05D008157 4.5e-84 315.8 278 58.6
MSTRG.428 Avicennia marina HOM05D006471 ORTHO05D008157 5.9e-84 315.5 358 48.9
SGA_v2.0_scaffold92G28263 Striga asiatica HOM05D006471 ORTHO05D008157 5.9e-84 315.5 280 57.1
FvH4_4g37140 Fragaria vesca HOM05D006471 ORTHO05D008157 1.3e-83 314.3 277 58.8
BcaB01g05607 Brassica carinata HOM05D006471 ORTHO05D008157 1.7e-83 313.9 273 58.6
Haze_11788 Corylus avellana HOM05D006471 ORTHO05D008157 2.2e-83 313.5 273 58.2
Sed0003381 Sechium edule HOM05D006471 ORTHO05D008157 2.9e-83 313.2 271 58.3
THA.LOC104818378 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 2.9e-83 313.2 280 58.2
Ah.16g106450 Amaranthus hybridus HOM05D000154 ORTHO05D000092 3.8e-83 312.8 278 57.9
MSTRG.8091 Avicennia marina HOM05D006471 ORTHO05D008157 5.0e-83 312.4 359 50.1
Duzib132G0448 Durio zibethinus HOM05D006471 ORTHO05D008157 6.5e-83 312.0 275 57.8
A03p03780 Brassica napus HOM05D006471 ORTHO05D008157 8.5e-83 311.6 274 58.4
BraA03t09725Z Brassica rapa HOM05D006471 ORTHO05D008157 8.5e-83 311.6 274 58.4
Sc10g0006980 Simmondsia chinensis HOM05D006471 ORTHO05D008157 8.5e-83 311.6 273 57.9
MD16G1004200 Malus domestica HOM05D006471 ORTHO05D008157 1.5e-82 310.8 284 57.0
HanXRQChr03g0076951 Helianthus annuus HOM05D006471 ORTHO05D008157 2.5e-82 310.1 274 55.8
AL6G34590 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 3.2e-82 309.7 278 56.8
C03p04260 Brassica napus HOM05D006471 ORTHO05D008157 3.2e-82 309.7 274 58.4
BolC3t12958H Brassica oleracea HOM05D006471 ORTHO05D008157 3.2e-82 309.7 274 58.4
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 4.2e-82 309.3 253 60.1
Nn2g12513 Nelumbo nucifera HOM05D006471 ORTHO05D008157 9.4e-82 308.1 280 57.1
PGR142G1667 Punica granatum HOM05D006471 ORTHO05D008157 9.4e-82 308.1 279 56.3
AT5G08340 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 1.2e-81 307.8 272 57.0
AUR62017731 Chenopodium quinoa HOM05D006471 ORTHO05D008157 1.2e-81 307.8 283 54.4
Aqoxy2G00030 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 2.1e-81 307.0 270 59.3
EL10Ac9g22981 Beta vulgaris HOM05D006471 ORTHO05D008157 6.1e-81 305.4 277 53.8
ClCG02G014150 Citrullus lanatus HOM05D006471 ORTHO05D008157 6.1e-81 305.4 326 50.6
Aqoxy2G01235 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 8.0e-81 305.1 270 58.9
Cpa.g.sc60.91 Carica papaya HOM05D006471 ORTHO05D008157 1.0e-80 304.7 259 57.9
AUR62032950 Chenopodium quinoa HOM05D006471 ORTHO05D008157 1.4e-80 304.3 278 55.4
CARHR190210 Cardamine hirsuta HOM05D006471 ORTHO05D008157 5.2e-80 302.4 276 55.8
unitig_749.g13340 Utricularia gibba HOM05D006471 ORTHO05D008157 5.2e-80 302.4 272 54.8
SEGI_40912 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 3.7e-78 296.2 314 51.6
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 3.7e-78 296.2 350 47.1
ECA240G3241 Erigeron canadensis HOM05D006471 ORTHO05D008157 5.3e-77 292.4 236 60.2
SGA_v2.0_scaffold42G16129 Striga asiatica HOM05D006471 ORTHO05D008157 9.1e-77 291.6 317 50.2
MELO3C011756.2 Cucumis melo HOM05D006471 ORTHO05D008157 1.2e-76 291.2 365 45.8
arahy.Tifrunner.gnm1.ann1.V4ETXF Arachis hypogaea HOM05D006471 ORTHO05D008157 2.2e-75 287.0 339 48.1
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 5.0e-75 285.8 319 48.6
Cc00_g09970 Coffea canephora HOM05D006471 ORTHO05D008157 2.1e-73 280.4 244 59.4
FAN17G0671 Fragaria x ananassa HOM05D006471 ORTHO05D008157 1.8e-72 277.3 259 56.0
FAN07G1501 Fragaria x ananassa HOM05D002605 ORTHO05D002842 5.2e-72 275.8 237 58.6
Oeu006329.1 Olea europaea HOM05D006471 ORTHO05D008157 8.8e-72 275.0 215 62.3
Pp3c5_28930 Physcomitrium patens HOM05D006471 ORTHO05D008157 3.8e-67 259.6 258 50.4
Prupe.1G349200 Prunus persica HOM05D006471 ORTHO05D008157 6.5e-67 258.8 241 56.4
QL08p056974 Quercus lobata HOM05D006471 ORTHO05D008157 1.6e-65 254.2 228 56.6
Mapoly0019s0104 Marchantia polymorpha HOM05D006471 ORTHO05D008157 7.5e-63 245.4 284 47.2
Pp3c14_5150 Physcomitrium patens HOM05D006471 ORTHO05D008157 1.0e-59 235.0 297 43.4
Carub.0006s2111 Capsella rubella HOM05D006471 ORTHO05D008157 4.0e-56 223.0 229 51.5
SMO141G0020 Selaginella moellendorffii HOM05D006471 ORTHO05D008157 3.4e-55 219.9 189 56.1
MD13G1003200 Malus domestica HOM05D006471 ORTHO05D008157 1.7e-54 217.6 147 67.3
Glyma.20G102800 Glycine max HOM05D006471 ORTHO05D008157 1.7e-43 181.0 287 40.8
MCO07G267 Micromonas commoda HOM05D006471 ORTHO05D008157 3.7e-38 163.3 217 44.7
AagrBONN_evm.TU.Sc2ySwM_362.1554 Anthoceros agrestis HOM05D006471 ORTHO05D008157 8.3e-38 162.2 157 49.0
FAN12G2193 Fragaria x ananassa HOM05D006471 ORTHO05D008157 2.8e-33 147.1 128 58.6
Sc06g0004050 Simmondsia chinensis HOM05D006471 ORTHO05D008157 1.6e-28 131.3 151 49.7
Cre13.g607600 Chlamydomonas reinhardtii HOM05D006471 ORTHO05D008157 8.4e-22 109.0 335 29.0
QL08p056966 Quercus lobata HOM05D006471 ORTHO05D008157 4.9e-14 83.2 48 83.3
Os06g0536800 Oryza sativa ssp. japonica HOM05D006471 ORTHO05D008157 1.4e-13 81.6 54 79.6
Carub.0006s2110 Capsella rubella HOM05D006471 ORTHO05D008157 3.2e-13 80.5 48 77.1
BolC9t53696H Brassica oleracea HOM05D006471 ORTHO05D008157 3.0e-11 73.9 82 42.7
arahy.Tifrunner.gnm1.ann1.SQAN1F Arachis hypogaea HOM05D006471 ORTHO05D008157 1.3e-09 68.6 42 73.8


User provided reference genes

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