Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0765100 Oryza sativa ssp. japonica HOM05D001279 ORTHO05D009618 3.4e-121 438.3 222 100.0
Zm00001eb214130 Zea mays HOM05D001279 ORTHO05D009618 5.7e-84 314.7 225 67.1
MBI16_g08581_MAGBIO Magnolia biondii HOM05D001279 ORTHO05D009618 9.5e-39 164.5 228 41.2
HPP92_018728 Vanilla planifolia HOM05D001279 ORTHO05D009618 1.6e-38 163.7 223 36.8
CSS0006181 Camellia sinensis var. sinensis HOM05D001279 ORTHO05D009618 4.4e-36 155.6 220 39.5
CSS0048007 Camellia sinensis var. sinensis HOM05D001279 ORTHO05D009618 4.4e-36 155.6 220 39.5
TAR381G1355 Trochodendron aralioides HOM05D001279 ORTHO05D009618 2.4e-34 149.8 227 40.1
Cfa018492 Carpinus fangiana HOM05D001279 ORTHO05D009618 3.2e-34 149.4 224 37.5
Haze_17583 Corylus avellana HOM05D001279 ORTHO05D009618 1.6e-33 147.1 224 36.6
Nn5g29377 Nelumbo nucifera HOM05D001279 ORTHO05D009618 3.5e-33 146.0 224 38.4
Lj4A49G69 Lonicera japonica HOM05D001279 ORTHO05D009618 7.8e-33 144.8 224 36.6
vmacro21579 Vaccinium macrocarpon HOM05D001279 ORTHO05D009618 3.0e-32 142.9 209 38.8
MD15G1034900 Malus domestica HOM05D001279 ORTHO05D009618 3.9e-32 142.5 224 37.9
Thecc.08G015700 Theobroma cacao HOM05D001279 ORTHO05D009618 1.1e-31 141.0 224 38.8
Duzib093G1800 Durio zibethinus HOM05D001279 ORTHO05D009618 1.5e-31 140.6 224 37.1
Potri.014G036300 Populus trichocarpa HOM05D001279 ORTHO05D009618 1.9e-31 140.2 220 37.3
CiPaw.16G050900 Carya illinoinensis HOM05D001279 ORTHO05D009618 3.3e-31 139.4 224 34.8
Actinidia22594 Actinidia chinensis HOM05D001279 ORTHO05D009618 4.3e-31 139.0 224 37.5
Dinv36006 Davidia involucrata HOM05D001279 ORTHO05D009618 4.3e-31 139.0 223 35.9
Duzib116G0433 Durio zibethinus HOM05D001279 ORTHO05D009618 5.6e-31 138.7 224 40.2
PSO541G2686 Papaver somniferum HOM05D001279 ORTHO05D009618 5.6e-31 138.7 224 35.3
DCAR_012762 Daucus carota HOM05D001279 ORTHO05D001636 1.6e-30 137.1 222 34.7
Sabra14G0026100 Salix brachista HOM05D001279 ORTHO05D009618 2.1e-30 136.7 222 36.5
Gorai.002G130600 Gossypium raimondii HOM05D001279 ORTHO05D009618 4.7e-30 135.6 224 36.6
Gohir.A01G118100 Gossypium hirsutum HOM05D001279 ORTHO05D009618 1.1e-29 134.4 224 36.2
Gohir.D01G106400 Gossypium hirsutum HOM05D001279 ORTHO05D009618 1.1e-29 134.4 224 36.2
Medtr1g021180 Medicago truncatula HOM05D001279 ORTHO05D009618 1.1e-29 134.4 226 37.2
Ca_13316_v3 Cicer arietinum L. HOM05D001279 ORTHO05D009618 1.4e-29 134.0 216 39.4
Phvul.001G018600 Phaseolus vulgaris HOM05D001279 ORTHO05D009618 1.8e-29 133.7 222 36.5
arahy.Tifrunner.gnm1.ann1.5J9JWM Arachis hypogaea HOM05D001279 ORTHO05D009618 2.3e-29 133.3 220 37.7
arahy.Tifrunner.gnm1.ann1.87Y2S4 Arachis hypogaea HOM05D001279 ORTHO05D009618 2.3e-29 133.3 220 37.7
PSO675G6998 Papaver somniferum HOM05D001279 ORTHO05D009618 2.3e-29 133.3 203 36.0
TPR.G13681 Trifolium pratense HOM05D001279 ORTHO05D009618 6.8e-29 131.7 215 38.6
Rhsim06G0041200 Rhododendron simsii HOM05D001279 ORTHO05D009618 8.9e-29 131.3 196 37.2
QL02p006279 Quercus lobata HOM05D001279 ORTHO05D009618 1.5e-28 130.6 223 35.9
Dinv39351 Davidia involucrata HOM05D001279 ORTHO05D009618 2.0e-28 130.2 224 34.4
MD08G1040400 Malus domestica HOM05D001279 ORTHO05D009618 3.4e-28 129.4 224 35.7
Psat6g011440 Pisum sativum HOM05D001279 ORTHO05D009618 4.4e-28 129.0 226 36.3
PGSC0003DMG402011681 Solanum tuberosum HOM05D001279 ORTHO05D009618 4.4e-28 129.0 217 38.2
Lalb_Chr22g0355261 Lupinus albus HOM05D001279 ORTHO05D009618 5.8e-28 128.6 224 38.4
Nitab4.5_0008935g0010 Nicotiana tabacum HOM05D001279 ORTHO05D009618 5.8e-28 128.6 219 36.1
VMungo0647G1436 Vigna mungo HOM05D001279 ORTHO05D009618 9.9e-28 127.9 222 36.0
Nitab4.5_0000068g0160 Nicotiana tabacum HOM05D001279 ORTHO05D009618 2.2e-27 126.7 219 36.1
COL.COLO4_26434 Corchorus olitorius HOM05D001279 ORTHO05D009618 3.8e-27 125.9 209 39.7
Cpa.g.sc357.10 Carica papaya HOM05D001279 ORTHO05D009618 4.9e-27 125.6 204 37.7
TWI56G1268 Tripterygium wilfordii HOM05D001279 ORTHO05D009618 6.4e-27 125.2 227 35.7
Eucgr.F02384 Eucalyptus grandis HOM05D001279 ORTHO05D009618 8.4e-27 124.8 203 36.9
Peaxi162Scf01514g00030 Petunia axillaris HOM05D001279 ORTHO05D009618 8.4e-27 124.8 218 37.2
Prupe.1G389000 Prunus persica HOM05D001279 ORTHO05D009618 8.4e-27 124.8 224 33.5
Lj5g0026644 Lotus japonicus HOM05D001279 ORTHO05D009618 1.9e-26 123.6 220 36.8
Sopen04g033120 Solanum pennellii HOM05D001279 ORTHO05D009618 2.4e-26 123.2 218 37.2
Aqoxy6G00907 Aquilegia oxysepala HOM05D001279 ORTHO05D009618 4.1e-26 122.5 197 38.1
PGR031G1589 Punica granatum HOM05D001279 ORTHO05D009618 7.1e-26 121.7 218 33.0
SalBow8G1709 Salvia bowleyana HOM05D001279 ORTHO05D009618 7.1e-26 121.7 203 35.5
Solyc04g079540.3 Solanum lycopersicum HOM05D001279 ORTHO05D009618 1.2e-25 120.9 221 37.1
RcHm_v2.0_Chr6g0299921 Rosa chinensis HOM05D001279 ORTHO05D009618 1.6e-25 120.6 227 33.0
SGA_v2.0_scaffold558G52916 Striga asiatica HOM05D001279 ORTHO05D009618 6.0e-25 118.6 212 32.1
Glyma.17G245800 Glycine max HOM05D001279 ORTHO05D009618 1.0e-24 117.9 220 33.6
Migut.N02687 Erythranthe guttata HOM05D001279 ORTHO05D009618 2.3e-24 116.7 202 34.7
THA.LOC104815190 Tarenaya hassleriana HOM05D001279 ORTHO05D009618 8.6e-24 114.8 204 36.3
HanXRQChr16g0508101 Helianthus annuus HOM05D001279 ORTHO05D009618 3.3e-23 112.8 205 33.2
Manes.05G169300 Manihot esculenta HOM05D001279 ORTHO05D009618 5.6e-23 112.1 229 33.2
CANSAT25G1505 Cannabis sativa HOM05D001279 ORTHO05D009618 7.3e-23 111.7 233 35.2
CsaV3_4G033960 Cucumis sativus L. HOM05D001279 ORTHO05D009618 1.6e-22 110.5 208 31.2
FAN15G1316 Fragaria x ananassa HOM05D001279 ORTHO05D009618 2.1e-22 110.2 229 31.0
ClCG05G019520 Citrullus lanatus HOM05D001279 ORTHO05D009618 2.8e-22 109.8 211 30.8
Sp1g34690 Schrenkiella parvula HOM05D001279 ORTHO05D009618 2.8e-22 109.8 204 33.8
Manes.18G035401 Manihot esculenta HOM05D001279 ORTHO05D009618 3.6e-22 109.4 194 35.1
Sed0016077 Sechium edule HOM05D001279 ORTHO05D009618 3.6e-22 109.4 202 33.2
CARHR037310 Cardamine hirsuta HOM05D001279 ORTHO05D009618 8.1e-22 108.2 206 32.0
FAN20G0232 Fragaria x ananassa HOM05D001279 ORTHO05D001636 8.1e-22 108.2 229 31.0
FAN20G1724 Fragaria x ananassa HOM05D001279 ORTHO05D001636 8.1e-22 108.2 229 31.0
Sc15g0006520 Simmondsia chinensis HOM05D001279 ORTHO05D009618 1.4e-21 107.5 208 32.7
Thhalv10011550m.g Eutrema salsugineum HOM05D001279 ORTHO05D009618 2.4e-21 106.7 208 32.2
FvH4_2g40681 Fragaria vesca HOM05D001279 ORTHO05D009618 2.4e-21 106.7 228 31.1
MELO3C016722.2 Cucumis melo HOM05D001279 ORTHO05D009618 3.1e-21 106.3 215 31.2
unitig_22.g6775 Utricularia gibba HOM05D001279 ORTHO05D009618 4.0e-21 105.9 197 35.0
Lsat_1_v5_gn_4_123141 Lactuca sativa HOM05D001279 ORTHO05D009618 5.2e-21 105.5 197 34.0
AT1G47310 Arabidopsis thaliana HOM05D001279 ORTHO05D009618 6.9e-21 105.1 204 32.8
Carub.0001s3646 Capsella rubella HOM05D001279 ORTHO05D009618 1.5e-20 104.0 196 32.7
ECA232G0918 Erigeron canadensis HOM05D001279 ORTHO05D009618 1.5e-20 104.0 206 33.0
A10p06240 Brassica napus HOM05D001279 ORTHO05D009618 2.0e-20 103.6 201 32.8
BraA10t42892Z Brassica rapa HOM05D001279 ORTHO05D009618 2.0e-20 103.6 201 32.8
Aa31sc380G30 Aethionema arabicum HOM05D001279 ORTHO05D009618 2.6e-20 103.2 194 33.0
BcaB07g33819 Brassica carinata HOM05D001279 ORTHO05D009618 2.6e-20 103.2 202 34.7
BcaC08g42968 Brassica carinata HOM05D001279 ORTHO05D009618 7.6e-20 101.7 201 31.8
C06p02080 Brassica napus HOM05D001279 ORTHO05D009618 7.6e-20 101.7 201 31.8
AL1G54070 Arabidopsis lyrata HOM05D001279 ORTHO05D009618 1.7e-19 100.5 196 31.1
FAN27G0688 Fragaria x ananassa HOM05D001279 ORTHO05D001636 1.7e-19 100.5 214 31.3
BolC6t35339H Brassica oleracea HOM05D001279 ORTHO05D009618 6.4e-19 98.6 201 31.8
CDE07G1628 Ceratophyllum demersum HOM05D001279 ORTHO05D009618 6.6e-16 88.6 208 27.9
Glyma.14G079333 Glycine max HOM05D001279 ORTHO05D009618 1.8e-13 80.5 187 29.4
Actinidia15275 Actinidia chinensis HOM05D001279 ORTHO05D009618 2.3e-08 63.5 85 32.9
Mapoly0020s0010 Marchantia polymorpha HOM05D005406 ORTHO05D006599 1.6e-06 57.4 129 31.0
Hma1.2p1_0727F.1_g209110 Hydrangea macrophylla HOM05D001279 ORTHO05D009618 2.8e-06 56.6 67 43.3
Medtr4g134220 Medicago truncatula HOM05D005406 ORTHO05D006599 8.1e-06 55.1 126 27.8


User provided reference genes

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