Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 7.2e-279 963.4 525 100.0
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 5.3e-221 771.2 533 77.7
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 2.2e-134 483.4 489 53.0
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 2.2e-134 483.4 489 53.0
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 3.7e-134 482.6 498 53.4
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 8.3e-134 481.5 565 49.7
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 1.4e-133 480.7 474 54.2
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 3.2e-133 479.6 547 49.9
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 7.0e-133 478.4 498 52.4
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 3.5e-132 476.1 545 49.2
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 4.6e-132 475.7 508 53.0
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 9.5e-130 468.0 501 51.1
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 6.2e-129 465.3 503 51.7
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 6.2e-129 465.3 501 51.7
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 6.2e-129 465.3 500 51.4
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 1.4e-128 464.2 493 52.1
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 3.1e-128 463.0 502 51.0
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 6.8e-128 461.8 501 50.9
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 8.9e-128 461.5 483 53.4
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 3.4e-127 459.5 542 49.3
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 3.4e-127 459.5 547 49.5
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 4.4e-127 459.1 493 51.1
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 5.8e-127 458.8 492 52.2
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 7.5e-127 458.4 500 50.6
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 9.8e-127 458.0 498 50.4
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 3.7e-126 456.1 552 48.7
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 6.4e-126 455.3 500 50.2
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 6.4e-126 455.3 495 51.5
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 1.1e-125 454.5 547 48.8
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 1.4e-125 454.1 489 51.3
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 2.4e-125 453.4 501 49.9
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 3.2e-125 453.0 553 47.9
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 9.2e-125 451.4 495 51.3
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 9.2e-125 451.4 488 51.0
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 1.2e-124 451.1 501 49.7
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 1.6e-124 450.7 503 49.5
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 2.1e-124 450.3 489 51.5
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 2.1e-124 450.3 492 51.2
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 3.5e-124 449.5 495 50.3
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 4.6e-124 449.1 493 50.3
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 7.8e-124 448.4 546 48.0
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 1.0e-123 448.0 491 50.5
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 1.7e-123 447.2 495 50.9
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 3.0e-123 446.4 489 50.7
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 3.0e-123 446.4 496 50.0
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 5.1e-123 445.7 494 48.8
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 6.6e-123 445.3 497 48.5
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 1.5e-122 444.1 496 50.0
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 1.5e-122 444.1 490 50.0
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 1.9e-122 443.7 493 49.5
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 1.9e-122 443.7 497 50.7
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 3.3e-122 443.0 491 50.1
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 5.6e-122 442.2 494 49.4
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 9.5e-122 441.4 498 48.4
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 3.6e-121 439.5 498 48.2
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 6.2e-121 438.7 488 48.6
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 6.2e-121 438.7 496 49.8
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 8.1e-121 438.3 498 48.2
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 1.4e-120 437.6 554 46.9
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 1.8e-120 437.2 545 46.2
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 5.2e-120 435.6 503 48.1
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 6.8e-120 435.3 498 48.0
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 1.2e-119 434.5 552 46.7
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 1.5e-119 434.1 551 48.1
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 2.0e-119 433.7 497 48.7
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 3.4e-119 433.0 550 47.6
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 3.4e-119 433.0 499 48.9
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 4.4e-119 432.6 550 47.1
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 4.4e-119 432.6 524 47.7
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 4.4e-119 432.6 500 48.6
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 5.8e-119 432.2 500 48.8
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 2.2e-118 430.3 488 49.4
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 2.9e-118 429.9 492 48.6
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 6.4e-118 428.7 481 49.5
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 4.1e-117 426.0 505 46.3
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 4.1e-117 426.0 493 48.7
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 5.4e-117 425.6 500 47.0
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 5.4e-117 425.6 497 48.1
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 1.6e-116 424.1 544 46.5
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 2.7e-116 423.3 495 48.1
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 3.5e-116 422.9 499 48.5
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 3.5e-116 422.9 520 49.0
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 4.6e-116 422.5 550 44.9
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 6.6e-115 418.7 552 44.2
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 8.6e-115 418.3 498 47.0
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 8.6e-115 418.3 533 46.5
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 6.2e-113 412.1 355 59.7
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 4.0e-112 409.5 500 44.8
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 5.2e-112 409.1 509 46.4
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.6e-111 406.8 497 47.7
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.6e-111 406.8 497 47.9
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.7e-110 404.1 497 47.7
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.2e-110 403.7 497 47.7
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.1e-109 401.4 497 47.7
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 1.4e-109 401.0 484 48.1
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 7.8e-108 395.2 498 47.2
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 1.7e-107 394.0 508 45.1
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 4.3e-106 389.4 485 46.6
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 4.5e-103 379.4 495 44.6
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 1.3e-102 377.9 419 48.7
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 8.4e-102 375.2 498 43.6
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 1.6e-97 360.9 360 51.7
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 1.1e-96 358.2 577 38.3
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 9.9e-95 351.7 321 56.1
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 1.7e-94 350.9 501 42.5
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 9.3e-93 345.1 501 42.3
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 4.3e-90 336.3 372 48.9
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 3.5e-84 316.6 492 40.7
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 4.3e-82 309.7 306 53.9
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 9.0e-80 302.0 492 40.0
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 5.5e-77 292.7 318 50.6
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 3.6e-76 290.0 431 43.2
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 2.3e-75 287.3 525 38.7
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 5.1e-75 286.2 401 42.1
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 2.5e-74 283.9 506 37.7
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 7.4e-74 282.3 377 43.2
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 4.6e-68 263.1 473 37.6
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 1.1e-64 251.9 450 42.4
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 1.5e-63 248.1 348 44.0
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 6.3e-57 226.1 476 35.3
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 1.8e-56 224.6 476 35.3
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 2.4e-56 224.2 414 39.4
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 2.0e-47 194.5 262 43.1
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 3.2e-45 187.2 240 46.2
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 5.5e-45 186.4 215 47.9
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 8.3e-41 172.6 428 33.2
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 4.4e-34 150.2 166 52.4
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 2.8e-33 147.5 123 59.3
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 1.8e-32 144.8 112 64.3
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.6e-28 130.6 105 61.9
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 1.4e-27 128.6 218 37.6
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 2.0e-26 124.8 134 52.2
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 3.4e-26 124.0 571 27.1
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 3.7e-25 120.6 199 38.7
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 3.2e-24 117.5 365 28.2
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 5.4e-24 116.7 87 64.4
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 9.2e-24 115.9 104 55.8
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 2.0e-23 114.8 97 59.8
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 3.9e-22 110.5 398 29.6
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 9.5e-21 105.9 87 62.1
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 1.6e-20 105.1 115 47.0
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.8e-19 101.7 168 38.1
Cfa026360 Carpinus fangiana HOM05D001925 ORTHO05D005701 1.7e-09 68.6 508 24.8
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 1.4e-08 65.5 74 48.6
Cre07.g355200 Chlamydomonas reinhardtii HOM05D001925 ORTHO05D005701 7.8e-07 59.7 546 24.0
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 6.6e-06 56.6 88 37.5


User provided reference genes

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