Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 3.3e-223 778.1 398 100.0
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 1.2e-140 503.8 329 80.9
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 4.6e-92 342.4 348 53.2
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 3.6e-89 332.8 346 52.3
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 8.1e-89 331.6 351 50.4
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 1.4e-88 330.9 344 52.9
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 8.9e-88 328.2 330 53.3
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 2.0e-87 327.0 351 50.4
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 1.9e-85 320.5 347 51.9
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 5.4e-85 318.9 329 51.4
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 9.2e-85 318.2 350 49.4
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 1.2e-84 317.8 333 51.7
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 2.1e-84 317.0 329 53.8
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 3.5e-84 316.2 322 53.1
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 3.5e-84 316.2 342 50.3
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 1.7e-83 313.9 327 51.4
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 1.7e-83 313.9 346 49.4
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 2.3e-83 313.5 327 51.4
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 3.9e-83 312.8 365 49.6
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 3.3e-82 309.7 328 50.9
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 5.6e-82 308.9 351 48.4
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.6e-81 307.4 345 49.3
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 2.8e-81 306.6 329 51.4
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 4.7e-81 305.8 321 50.5
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 4.7e-81 305.8 345 48.1
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 4.7e-81 305.8 344 51.2
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 4.7e-81 305.8 335 50.7
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 6.2e-81 305.4 286 55.6
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 8.1e-81 305.1 336 48.8
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 8.1e-81 305.1 335 50.4
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 8.1e-81 305.1 281 56.9
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 1.8e-80 303.9 329 50.8
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.4e-80 303.5 345 49.0
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 6.8e-80 302.0 324 51.5
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 1.2e-79 301.2 325 48.3
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 1.5e-79 300.8 346 48.3
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 2.6e-79 300.1 345 48.4
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 2.6e-79 300.1 327 50.5
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 2.6e-79 300.1 301 54.5
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 3.4e-79 299.7 328 49.7
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 5.8e-79 298.9 345 48.4
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 5.8e-79 298.9 283 55.1
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 9.9e-79 298.1 337 51.6
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 1.3e-78 297.7 339 51.0
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 1.3e-78 297.7 336 52.1
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 2.2e-78 297.0 343 50.4
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 2.2e-78 297.0 283 55.1
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 2.9e-78 296.6 327 49.5
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 3.8e-78 296.2 284 54.2
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 4.9e-78 295.8 344 48.3
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 6.4e-78 295.4 353 50.1
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 6.4e-78 295.4 330 49.1
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 6.4e-78 295.4 326 51.5
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 6.4e-78 295.4 333 52.0
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 6.4e-78 295.4 359 48.2
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 8.4e-78 295.0 327 48.6
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 1.1e-77 294.7 324 49.1
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 1.9e-77 293.9 362 45.3
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 2.4e-77 293.5 339 49.6
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 2.4e-77 293.5 324 48.8
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 5.4e-77 292.4 324 49.4
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 1.2e-76 291.2 336 48.5
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 1.2e-76 291.2 341 47.8
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 1.6e-76 290.8 304 52.3
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 2.1e-76 290.4 303 52.5
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 2.7e-76 290.0 303 52.1
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 4.6e-76 289.3 324 50.0
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 4.6e-76 289.3 303 52.1
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 7.8e-76 288.5 322 51.2
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 7.8e-76 288.5 340 47.1
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 1.3e-75 287.7 327 48.6
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 1.7e-75 287.3 339 48.7
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.7e-75 287.3 296 51.4
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 1.7e-75 287.3 328 50.3
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 1.7e-75 287.3 354 48.3
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 2.3e-75 287.0 327 49.5
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 3.9e-75 286.2 331 48.9
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 3.9e-75 286.2 337 47.8
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 3.9e-75 286.2 345 47.5
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 5.1e-75 285.8 289 55.7
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 6.6e-75 285.4 327 47.1
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 6.6e-75 285.4 345 48.4
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 8.7e-75 285.0 335 49.0
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 8.7e-75 285.0 343 48.1
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 8.7e-75 285.0 322 49.1
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 8.7e-75 285.0 337 47.8
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 1.1e-74 284.6 348 47.4
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 1.1e-74 284.6 322 49.7
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 1.9e-74 283.9 322 50.0
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 2.5e-74 283.5 326 48.5
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 2.5e-74 283.5 338 46.7
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 3.3e-74 283.1 344 48.3
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 5.6e-74 282.3 328 49.4
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 7.3e-74 282.0 352 46.9
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 1.3e-73 281.2 323 49.8
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 1.3e-73 281.2 322 49.4
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 1.3e-73 281.2 288 52.4
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 1.3e-73 281.2 328 48.2
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 2.1e-73 280.4 328 47.0
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 2.1e-73 280.4 321 48.6
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 2.8e-73 280.0 342 46.8
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 2.8e-73 280.0 290 53.4
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 6.2e-73 278.9 331 48.0
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 3.1e-72 276.6 329 47.7
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 3.1e-72 276.6 282 53.9
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 9.0e-72 275.0 337 49.3
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 9.0e-72 275.0 289 52.9
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 1.5e-71 274.2 322 49.1
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 1.1e-69 268.1 358 43.3
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 1.9e-69 267.3 328 45.4
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 4.8e-65 252.7 283 50.2
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 1.1e-64 251.5 309 47.2
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 5.3e-64 249.2 291 51.2
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.8e-59 234.2 335 43.6
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 6.7e-59 232.3 313 46.0
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 3.3e-58 229.9 294 46.3
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 1.2e-55 221.5 278 47.5
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 4.5e-55 219.5 293 44.0
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 2.9e-54 216.9 328 42.7
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 7.1e-53 212.2 267 48.3
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 1.0e-51 208.4 306 42.2
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 6.5e-46 189.1 201 50.7
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 8.7e-43 178.7 194 52.1
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 2.7e-36 157.1 166 48.2
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 2.6e-26 124.0 165 46.1
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 1.0e-22 112.1 86 55.8
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 2.1e-20 104.4 140 45.7
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 2.0e-18 97.8 131 44.3
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 8.5e-14 82.4 78 53.8
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 1.1e-13 82.0 101 47.5
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 1.0e-11 75.5 87 42.5
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 2.6e-10 70.9 117 42.7
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 2.6e-10 70.9 117 42.7
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 3.7e-09 67.0 83 49.4
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.8e-08 64.7 180 33.3
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.6e-07 61.6 128 36.7


User provided reference genes

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