Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 9.4e-89 330.1 160 100.0
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 1.1e-65 253.4 160 78.8
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 1.1e-63 246.9 160 78.1
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 6.4e-37 157.9 152 48.0
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 2.1e-35 152.9 165 45.5
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 1.1e-31 140.6 161 46.6
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 1.4e-31 140.2 162 46.3
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 4.0e-31 138.7 157 42.0
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 2.2e-29 132.9 158 43.0
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 2.9e-29 132.5 170 43.5
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 8.4e-29 131.0 170 36.5
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 8.4e-29 131.0 170 36.5
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 2.4e-28 129.4 172 42.4
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 3.2e-28 129.0 167 42.5
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 9.3e-28 127.5 158 41.8
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 2.7e-27 125.9 156 42.3
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 4.6e-27 125.2 170 41.8
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 1.8e-26 123.2 156 39.7
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 1.8e-26 123.2 154 43.5
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 2.3e-26 122.9 156 42.3
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 3.0e-26 122.5 152 44.1
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 3.9e-26 122.1 155 45.2
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 3.9e-26 122.1 155 45.2
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 5.1e-26 121.7 155 44.5
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 5.1e-26 121.7 155 44.5
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 6.7e-26 121.3 154 40.3
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 1.1e-25 120.6 157 43.3
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 1.9e-25 119.8 158 38.0
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.9e-25 119.8 157 39.5
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 2.5e-25 119.4 150 42.7
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 9.6e-25 117.5 155 41.3
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 1.3e-24 117.1 160 43.1
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 1.3e-24 117.1 154 40.3
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 1.3e-24 117.1 159 40.3
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 2.1e-24 116.3 158 43.7
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 2.1e-24 116.3 156 41.0
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 2.8e-24 115.9 156 41.0
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 2.8e-24 115.9 154 41.6
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 3.7e-24 115.5 158 43.0
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 3.7e-24 115.5 160 39.4
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 3.7e-24 115.5 165 38.2
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 8.1e-24 114.4 157 39.5
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 8.1e-24 114.4 157 39.5
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 1.4e-23 113.6 154 39.0
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 1.4e-23 113.6 158 43.0
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 1.8e-23 113.2 156 42.9
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 1.8e-23 113.2 162 39.5
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 1.8e-23 113.2 158 37.3
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 2.4e-23 112.8 151 39.7
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 2.4e-23 112.8 154 39.6
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 4.0e-23 112.1 154 38.3
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 4.0e-23 112.1 154 38.3
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 5.3e-23 111.7 154 38.3
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 9.0e-23 110.9 154 39.0
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 9.0e-23 110.9 161 37.3
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 1.2e-22 110.5 152 37.5
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 1.2e-22 110.5 162 38.9
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 1.2e-22 110.5 152 40.8
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 1.2e-22 110.5 156 37.8
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 1.5e-22 110.2 178 36.5
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 1.5e-22 110.2 154 39.0
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 1.5e-22 110.2 154 39.0
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 2.6e-22 109.4 152 36.8
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.6e-22 109.4 165 38.8
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 3.4e-22 109.0 159 39.6
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 7.6e-22 107.8 153 41.8
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 7.6e-22 107.8 154 37.7
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.3e-21 107.1 154 39.0
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 1.3e-21 107.1 163 36.8
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 1.3e-21 107.1 153 38.6
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 2.2e-21 106.3 156 38.5
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 2.9e-21 105.9 158 38.0
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 3.8e-21 105.5 154 39.0
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 3.8e-21 105.5 156 38.5
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 4.9e-21 105.1 156 38.5
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 4.9e-21 105.1 162 40.7
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.9e-21 105.1 152 39.5
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 4.9e-21 105.1 156 37.2
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 4.9e-21 105.1 154 37.0
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 6.4e-21 104.8 154 36.4
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 8.4e-21 104.4 152 41.4
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 8.4e-21 104.4 155 34.8
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 8.4e-21 104.4 163 36.2
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 1.1e-20 104.0 153 37.3
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 1.1e-20 104.0 153 37.3
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 1.1e-20 104.0 153 37.3
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 1.1e-20 104.0 153 37.3
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 1.4e-20 103.6 154 37.7
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 1.9e-20 103.2 163 35.6
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 1.9e-20 103.2 157 34.4
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 1.9e-20 103.2 164 33.5
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.9e-20 103.2 164 33.5
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.9e-20 103.2 164 35.4
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 1.9e-20 103.2 154 39.0
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.9e-20 103.2 162 37.0
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 1.9e-20 103.2 156 36.5
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 2.5e-20 102.8 161 36.0
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 2.5e-20 102.8 153 36.6
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 2.5e-20 102.8 160 37.5
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 3.2e-20 102.4 155 37.4
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 3.2e-20 102.4 159 34.6
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 4.2e-20 102.1 156 39.1
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 4.2e-20 102.1 154 36.4
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 4.2e-20 102.1 153 36.6
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 5.5e-20 101.7 156 37.2
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 7.1e-20 101.3 159 35.8
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 7.1e-20 101.3 157 37.6
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 7.1e-20 101.3 157 37.6
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 9.3e-20 100.9 161 37.9
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 1.2e-19 100.5 156 38.5
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 2.1e-19 99.8 160 35.6
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 2.1e-19 99.8 155 36.1
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 2.7e-19 99.4 159 36.5
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 6.0e-19 98.2 166 38.0
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 7.9e-19 97.8 163 38.0
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 1.0e-18 97.4 153 37.3
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 1.8e-18 96.7 168 34.5
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.8e-18 96.7 153 37.9
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 2.3e-18 96.3 182 31.9
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 2.3e-18 96.3 158 34.2
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 3.0e-18 95.9 168 35.7
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 3.0e-18 95.9 160 35.6
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 3.9e-18 95.5 167 36.5
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 5.1e-18 95.1 168 34.5
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 5.1e-18 95.1 168 35.7
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 5.1e-18 95.1 161 32.9
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 6.7e-18 94.7 151 35.8
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 6.7e-18 94.7 154 35.7
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 2.5e-17 92.8 157 36.9
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 3.3e-17 92.4 168 33.9
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 5.6e-17 91.7 155 33.5
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 9.6e-17 90.9 169 31.4
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 9.6e-17 90.9 155 30.3
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 1.6e-16 90.1 153 34.0
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 2.8e-16 89.4 155 34.8
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 4.8e-16 88.6 152 32.2
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 1.4e-15 87.0 151 33.1
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 9.0e-15 84.3 153 34.0
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 1.5e-14 83.6 157 32.5
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 3.4e-14 82.4 158 31.0
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 4.5e-14 82.0 158 31.0
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 2.2e-13 79.7 161 31.1
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.9e-13 79.3 119 36.1
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 3.8e-13 79.0 119 37.8
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 4.9e-13 78.6 136 33.1
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 1.1e-12 77.4 119 37.8
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 2.5e-12 76.3 155 32.3
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 3.2e-12 75.9 155 32.3
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 4.2e-12 75.5 183 26.2
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 5.5e-12 75.1 76 51.3
Mapoly0082s0027 Marchantia polymorpha HOM05D004173 ORTHO05D004885 9.3e-12 74.3 159 32.7
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 2.7e-11 72.8 81 43.2
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 7.9e-11 71.2 122 36.1
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.0e-10 70.9 116 31.0
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 3.0e-10 69.3 120 35.0
CBR_g24287 Chara braunii HOM05D004173 ORTHO05D004885 5.1e-10 68.6 97 37.1
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 5.1e-10 68.6 158 31.6
Pp3c10_16350 Physcomitrium patens HOM05D004173 ORTHO05D004885 8.7e-10 67.8 156 32.7
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 1.1e-09 67.4 75 45.3
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 2.8e-08 62.8 158 30.4
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 3.1e-07 59.3 85 35.3
ECA233G6175 Erigeron canadensis HOM05D004173 ORTHO05D004885 5.9e-06 55.1 82 41.5
Lalb_Chr11g0067791 Lupinus albus HOM05D004173 ORTHO05D004885 1.0e-05 54.3 73 37.0


User provided reference genes

Program Settings