Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 0.0e+00 1499.2 748 100.0
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1411.0 748 94.4
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1409.0 748 94.1
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1222.6 746 82.2
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 0.0e+00 1213.4 709 83.8
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 0.0e+00 1211.4 710 83.5
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1206.0 742 81.4
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1206.0 709 82.8
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 0.0e+00 1204.1 710 83.5
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1203.3 710 83.4
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 0.0e+00 1202.2 739 80.9
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1201.8 735 80.5
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1201.4 744 80.9
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1200.7 711 83.4
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1200.3 708 83.2
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1198.7 728 80.6
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1198.0 728 80.6
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 0.0e+00 1197.6 722 82.0
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 0.0e+00 1195.6 724 81.4
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1195.6 745 79.9
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 0.0e+00 1195.6 695 83.2
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1194.9 745 79.7
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1194.5 727 81.3
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1193.7 711 82.7
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 0.0e+00 1192.6 692 84.0
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1192.6 748 79.9
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 0.0e+00 1192.2 723 81.6
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1191.4 745 79.6
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 0.0e+00 1191.0 742 79.6
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 0.0e+00 1191.0 691 84.1
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 0.0e+00 1191.0 722 81.7
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 0.0e+00 1190.6 710 82.5
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1190.3 719 82.1
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1189.9 746 79.8
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 0.0e+00 1189.9 706 82.2
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 0.0e+00 1189.9 745 78.0
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 0.0e+00 1189.5 691 83.9
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1189.5 691 83.1
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1189.5 717 81.6
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1189.1 720 81.4
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1189.1 745 80.0
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 0.0e+00 1188.3 707 82.9
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 0.0e+00 1187.6 745 79.2
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1187.6 745 79.1
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 0.0e+00 1187.6 730 80.8
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1187.6 744 78.6
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1186.8 719 81.2
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1186.8 744 78.8
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1185.6 712 81.7
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1185.2 720 81.7
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1185.2 720 81.1
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1184.9 746 79.4
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 0.0e+00 1184.9 688 82.6
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 0.0e+00 1184.1 691 82.3
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1183.7 746 79.2
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1183.7 746 79.2
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 0.0e+00 1183.7 746 79.2
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 0.0e+00 1182.9 692 83.4
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1182.5 712 82.2
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 0.0e+00 1181.4 709 81.2
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 0.0e+00 1180.6 734 80.4
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 0.0e+00 1179.9 710 81.0
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 0.0e+00 1179.5 752 78.1
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1179.1 728 79.7
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1179.1 746 79.0
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 0.0e+00 1179.1 746 79.0
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 0.0e+00 1179.1 711 81.6
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1178.7 746 79.6
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 0.0e+00 1177.9 691 82.1
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1177.9 736 80.0
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 0.0e+00 1177.5 710 80.7
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1177.5 709 81.7
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1177.2 712 81.7
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 0.0e+00 1176.0 707 81.9
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1175.6 752 78.3
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 0.0e+00 1174.8 734 79.8
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1174.8 736 80.0
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 0.0e+00 1173.7 709 81.2
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1173.3 691 82.8
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1173.3 745 78.9
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 0.0e+00 1172.9 778 76.9
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 0.0e+00 1172.5 710 81.0
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1172.1 735 78.4
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 0.0e+00 1171.8 705 81.7
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1170.6 740 78.4
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1170.6 712 81.0
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1169.1 741 77.9
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1168.7 719 79.6
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1168.7 720 80.3
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1167.5 712 80.3
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1167.1 721 80.2
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1166.8 721 79.9
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1166.4 709 80.5
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1166.4 720 80.4
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1165.2 719 79.7
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1159.8 743 77.3
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1157.1 719 80.4
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 0.0e+00 1157.1 691 80.9
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 0.0e+00 1152.5 711 79.5
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 0.0e+00 1148.7 720 79.2
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 0.0e+00 1144.8 657 84.2
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1143.6 710 79.9
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1141.7 841 71.0
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1136.7 710 79.4
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 0.0e+00 1122.8 774 74.3
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1114.8 657 82.2
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1113.6 657 82.0
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1106.7 744 75.4
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1105.1 719 76.4
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 0.0e+00 1092.8 657 81.9
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1090.1 720 75.0
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1088.9 719 75.8
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1088.9 641 83.2
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 0.0e+00 1075.5 703 75.7
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 5.6e-309 1063.9 1033 57.1
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 1.9e-301 1038.9 750 72.8
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 1.7e-294 1015.8 592 84.6
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 2.8e-284 981.9 677 68.4
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 2.3e-278 962.2 723 70.3
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 5.1e-278 961.1 681 68.0
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 8.7e-278 960.3 708 66.8
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 8.7e-278 960.3 708 66.8
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 1.5e-277 959.5 722 65.9
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 4.3e-277 958.0 708 66.7
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 2.0e-274 949.1 678 66.5
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 2.0e-253 879.4 593 74.5
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 7.7e-250 867.5 593 74.0
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 3.2e-248 862.1 679 61.6
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 3.7e-228 795.4 679 57.4
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 2.1e-223 779.6 692 58.1
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 6.4e-212 741.5 675 56.9
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 1.7e-196 690.3 744 49.7
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 1.5e-192 677.2 643 59.7
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 1.9e-171 607.1 735 45.7
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 7.4e-160 568.5 362 76.2
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 1.2e-157 561.2 305 88.9
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 1.9e-144 517.3 294 87.1
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 7.2e-131 472.2 301 79.4
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 4.7e-130 469.5 245 92.2
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 1.6e-125 454.5 309 71.2
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 4.0e-121 439.9 294 70.7
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 9.5e-107 392.1 236 78.8
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 7.5e-96 355.9 241 73.0
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 7.0e-94 349.4 219 79.0
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 5.2e-89 333.2 300 60.3
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 3.7e-87 327.0 300 58.7
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 6.0e-77 293.1 186 80.6
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 7.6e-72 276.2 172 74.4
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 6.9e-65 253.1 125 96.0
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 4.9e-63 246.9 371 37.7
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.1e-62 245.7 165 75.2
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 1.6e-58 231.9 260 51.2
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 8.1e-58 229.6 113 95.6
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 8.1e-50 203.0 390 40.5
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 4.6e-45 187.2 117 77.8
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.0e-39 169.5 194 53.1
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 4.9e-39 167.2 102 73.5
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 1.1e-38 166.0 122 70.5
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 6.3e-34 150.2 113 70.8
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 1.8e-33 148.7 142 53.5
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 1.7e-31 142.1 94 72.3
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 9.4e-30 136.3 83 79.5
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 1.4e-28 132.5 105 62.9
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 4.1e-25 120.9 61 88.5
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 4.5e-24 117.5 99 63.6
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 2.9e-23 114.8 221 30.8
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 2.5e-22 111.7 136 51.5
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 3.2e-22 111.3 71 76.1
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 1.0e-15 89.7 56 76.8
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 1.1e-14 86.3 49 77.6
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 3.2e-14 84.7 138 45.7
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 1.1e-11 76.3 42 88.1
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 2.0e-11 75.5 42 83.3
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 1.4e-09 69.3 38 86.8
Psat2g105960 Pisum sativum HOM05D000610 ORTHO05D037361 3.2e-06 58.2 35 71.4


User provided reference genes

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