Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 0.0e+00 1187.2 701 100.0
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 3.6e-302 1041.2 704 87.4
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 1.6e-265 919.5 669 76.2
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 1.0e-259 900.2 669 75.6
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 4.2e-258 894.8 670 75.5
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 5.5e-258 894.4 670 75.2
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 2.7e-257 892.1 703 70.4
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 7.9e-257 890.6 703 70.4
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 7.9e-257 890.6 668 73.7
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 1.4e-256 889.8 668 74.9
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 1.1e-255 886.7 654 75.2
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 5.7e-255 884.4 652 74.1
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 5.7e-255 884.4 670 74.9
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 1.7e-254 882.9 703 70.4
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 1.7e-254 882.9 669 74.9
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 1.7e-254 882.9 670 73.9
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 2.2e-254 882.5 670 74.2
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 2.2e-254 882.5 668 74.3
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 8.2e-254 880.6 665 74.4
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 1.4e-253 879.8 668 75.7
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 1.8e-253 879.4 670 73.1
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 3.1e-253 878.6 647 75.9
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 9.1e-253 877.1 665 74.3
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 1.5e-252 876.3 668 74.1
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 3.5e-252 875.2 704 70.7
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 2.9e-251 872.1 657 73.8
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 8.5e-251 870.5 703 70.6
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 1.9e-250 869.4 649 73.2
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 4.2e-250 868.2 703 68.4
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 9.4e-250 867.1 647 72.6
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 9.4e-250 867.1 703 70.1
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 1.2e-249 866.7 707 69.3
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 1.6e-249 866.3 703 70.0
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 3.6e-249 865.1 673 71.5
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 6.1e-249 864.4 675 71.6
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 8.0e-249 864.0 702 68.9
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 1.4e-248 863.2 703 68.8
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 1.4e-248 863.2 670 73.4
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 3.0e-248 862.1 655 74.7
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 5.2e-248 861.3 669 71.3
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 5.2e-248 861.3 649 72.7
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 5.2e-248 861.3 703 69.4
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 1.1e-247 860.1 707 68.0
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 1.1e-247 860.1 672 72.0
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 1.5e-247 859.8 703 68.3
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 2.6e-247 859.0 669 70.7
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 5.7e-247 857.8 670 71.6
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 9.7e-247 857.1 670 71.8
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 8.2e-246 854.0 669 72.2
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 8.2e-246 854.0 704 69.0
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 5.3e-245 851.3 667 72.6
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 9.1e-245 850.5 681 70.0
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 1.2e-244 850.1 764 64.5
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 2.6e-244 849.0 764 64.5
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 2.9e-243 845.5 672 72.0
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 5.0e-243 844.7 681 70.6
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 2.5e-242 842.4 703 69.0
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 1.6e-241 839.7 670 69.9
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 2.1e-241 839.3 703 67.7
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 3.6e-241 838.6 673 71.3
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 1.0e-240 837.0 715 67.7
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 1.0e-240 837.0 649 70.1
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 1.8e-240 836.3 649 71.6
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 4.0e-240 835.1 715 67.6
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 5.2e-240 834.7 649 71.5
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 3.3e-239 832.0 662 71.0
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 5.7e-239 831.2 666 71.0
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 2.2e-238 829.3 670 71.0
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 1.1e-237 827.0 674 69.0
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 1.4e-237 826.6 672 71.3
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 2.4e-237 825.9 681 69.5
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 4.1e-237 825.1 681 69.5
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 4.1e-237 825.1 670 68.8
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 7.0e-237 824.3 670 69.6
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 9.1e-237 823.9 647 71.1
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.2e-236 823.5 670 69.1
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 2.7e-236 822.4 670 68.7
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 1.3e-235 820.1 669 70.3
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 2.2e-235 819.3 667 69.6
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 1.1e-234 817.0 648 72.5
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 1.5e-234 816.6 681 68.4
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.9e-234 816.2 670 69.9
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 1.2e-233 813.5 700 66.9
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 3.6e-233 812.0 667 71.4
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 4.7e-233 811.6 681 68.6
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 2.3e-232 809.3 649 70.4
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 2.3e-232 809.3 667 67.2
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 8.8e-232 807.4 700 66.0
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 2.0e-231 806.2 648 70.7
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 2.0e-231 806.2 648 70.7
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 2.2e-230 802.7 657 68.8
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 1.2e-228 797.0 712 65.7
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 2.7e-228 795.8 703 66.3
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 4.5e-228 795.0 632 70.4
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 7.7e-228 794.3 719 64.1
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 1.1e-226 790.4 669 68.5
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 5.5e-226 788.1 619 73.0
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 2.1e-225 786.2 670 66.7
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 2.8e-225 785.8 670 66.9
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 8.0e-225 784.3 672 68.9
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 4.0e-224 781.9 649 68.9
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 5.2e-224 781.6 660 68.6
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 6.8e-224 781.2 670 67.6
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 2.0e-223 779.6 680 67.2
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 1.4e-221 773.5 591 74.8
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.2e-220 770.4 717 63.3
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 1.5e-218 763.5 598 72.2
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 7.8e-212 741.1 703 61.7
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 3.0e-211 739.2 590 69.8
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 8.6e-211 737.6 1053 46.8
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 3.3e-210 735.7 721 60.6
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 9.2e-205 717.6 672 62.2
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 4.3e-202 708.8 648 62.0
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 9.9e-199 697.6 649 61.2
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 1.1e-197 694.1 650 62.9
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 9.2e-197 691.0 652 60.4
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 1.3e-185 654.1 568 67.1
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 8.1e-185 651.4 702 57.7
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 1.7e-158 563.9 702 50.4
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 7.2e-141 505.4 406 71.4
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 3.7e-137 493.0 362 73.2
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 3.5e-135 486.5 415 68.4
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 3.6e-132 476.5 369 71.3
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 1.2e-122 444.9 556 51.8
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 1.0e-86 325.5 404 52.5
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 4.3e-77 293.5 709 33.4
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 4.2e-72 276.9 482 42.7
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 2.8e-68 264.2 491 42.0
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 3.6e-68 263.8 257 59.9
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 3.7e-44 184.1 127 74.8
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 4.1e-43 180.6 185 58.4
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 1.9e-40 171.8 288 43.4
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 3.2e-40 171.0 109 78.9
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.2e-39 169.1 140 64.3
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 5.7e-37 160.2 543 29.3
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.3e-36 159.1 94 84.0
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 9.7e-29 132.9 668 28.0
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 3.7e-28 131.0 642 24.8
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 1.7e-17 95.5 90 60.0
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 1.9e-16 92.0 709 22.4
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 4.4e-13 80.9 71 64.8
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 3.5e-10 71.2 77 61.0
Actinidia31022 Actinidia chinensis HOM05D004837 ORTHO05D005741 1.2e-07 62.8 49 65.3
Cre04.g223900 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 8.0e-07 60.1 244 21.7
DCAR_013034 Daucus carota HOM05D004837 ORTHO05D005741 4.0e-06 57.8 48 66.7
Hund02405 Selenicereus undatus HOM05D004837 ORTHO05D005741 6.8e-06 57.0 28 92.9


User provided reference genes

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