Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 4.1e-78 294.7 149 100.0
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 3.7e-63 245.0 149 76.5
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 3.7e-63 245.0 149 76.5
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 1.2e-58 229.9 142 78.2
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 6.1e-58 227.6 146 74.7
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.8e-57 226.1 149 69.8
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 2.0e-56 222.6 122 87.7
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 5.7e-56 221.1 143 75.5
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 5.7e-56 221.1 143 75.5
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 4.9e-55 218.0 141 70.9
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 2.4e-54 215.7 139 73.4
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 3.2e-54 215.3 138 71.0
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 5.4e-54 214.5 143 74.1
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 7.0e-54 214.2 139 71.9
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 1.2e-53 213.4 137 71.5
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 1.6e-53 213.0 138 71.7
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 2.0e-53 212.6 146 71.9
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 3.5e-53 211.8 142 71.1
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 4.6e-53 211.5 138 71.0
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 6.0e-53 211.1 139 71.2
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 6.0e-53 211.1 142 69.7
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 3.0e-52 208.8 139 69.8
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 3.9e-52 208.4 137 68.6
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 3.9e-52 208.4 143 67.8
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 5.0e-52 208.0 137 70.1
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 6.6e-52 207.6 138 67.4
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 6.6e-52 207.6 143 67.1
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 6.6e-52 207.6 139 69.8
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 8.6e-52 207.2 137 70.8
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 8.6e-52 207.2 138 68.8
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 1.9e-51 206.1 138 67.4
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 2.5e-51 205.7 143 66.4
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 2.5e-51 205.7 146 67.1
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 2.5e-51 205.7 139 69.8
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 3.3e-51 205.3 139 69.8
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 4.3e-51 204.9 138 70.3
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 4.3e-51 204.9 143 62.9
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 4.3e-51 204.9 144 65.3
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 5.6e-51 204.5 138 68.8
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 7.3e-51 204.1 142 66.9
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 7.3e-51 204.1 139 68.3
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 7.3e-51 204.1 139 68.3
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 9.5e-51 203.8 138 67.4
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 9.5e-51 203.8 138 65.2
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 1.2e-50 203.4 144 68.1
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 1.2e-50 203.4 143 65.7
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.6e-50 203.0 139 67.6
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 1.6e-50 203.0 143 66.4
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 2.8e-50 202.2 143 66.4
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 3.6e-50 201.8 138 68.8
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 3.6e-50 201.8 139 67.6
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 3.6e-50 201.8 145 67.6
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 3.6e-50 201.8 143 65.0
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 4.7e-50 201.4 135 71.1
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 4.7e-50 201.4 137 67.9
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 6.2e-50 201.1 143 65.0
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 6.2e-50 201.1 138 67.4
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 8.0e-50 200.7 142 68.3
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 8.0e-50 200.7 146 68.5
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 8.0e-50 200.7 138 65.2
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 1.8e-49 199.5 142 64.1
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 1.8e-49 199.5 143 63.6
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 2.3e-49 199.1 141 68.8
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 2.3e-49 199.1 141 68.8
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 2.3e-49 199.1 137 67.2
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 2.3e-49 199.1 137 67.2
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 3.1e-49 198.7 142 66.2
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 4.0e-49 198.4 143 67.8
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 5.2e-49 198.0 143 62.9
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 6.8e-49 197.6 143 64.3
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 8.9e-49 197.2 143 64.3
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 8.9e-49 197.2 141 65.2
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 1.2e-48 196.8 143 62.9
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 1.5e-48 196.4 143 63.6
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 2.0e-48 196.1 171 56.7
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 2.0e-48 196.1 143 63.6
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 2.0e-48 196.1 143 63.6
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 2.0e-48 196.1 144 63.9
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 2.0e-48 196.1 142 64.8
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 2.6e-48 195.7 142 64.1
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 3.4e-48 195.3 143 63.6
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 5.8e-48 194.5 135 65.9
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 7.5e-48 194.1 135 65.9
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 7.5e-48 194.1 135 65.9
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 7.5e-48 194.1 144 66.7
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 7.5e-48 194.1 143 66.4
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 1.3e-47 193.4 142 63.4
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 1.3e-47 193.4 135 65.2
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 1.7e-47 193.0 143 62.9
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 1.7e-47 193.0 143 62.9
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 2.2e-47 192.6 115 75.7
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 3.7e-47 191.8 137 65.0
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 3.7e-47 191.8 136 64.7
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 6.4e-47 191.0 137 66.4
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 1.1e-46 190.3 148 61.5
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 1.1e-46 190.3 137 64.2
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 1.4e-46 189.9 142 65.5
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 2.4e-46 189.1 140 62.9
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 4.1e-46 188.3 146 61.0
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 9.2e-46 187.2 137 62.0
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 2.0e-45 186.0 127 68.5
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 2.7e-45 185.7 162 56.8
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 3.5e-45 185.3 141 63.8
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 6.0e-45 184.5 138 63.0
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 6.0e-45 184.5 128 67.2
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 1.0e-44 183.7 121 69.4
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 1.3e-44 183.3 137 60.6
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 1.3e-44 183.3 137 62.0
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 1.3e-44 183.3 142 59.9
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 1.7e-44 183.0 127 69.3
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 2.3e-44 182.6 159 56.6
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 5.0e-44 181.4 138 63.8
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 6.6e-44 181.0 111 73.0
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 1.5e-43 179.9 146 61.0
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 1.5e-43 179.9 141 59.6
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 1.9e-43 179.5 115 71.3
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 1.9e-43 179.5 137 62.8
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 3.3e-43 178.7 137 58.4
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 4.3e-43 178.3 133 63.2
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 1.2e-42 176.8 140 56.4
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 2.1e-42 176.0 138 60.9
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 6.2e-42 174.5 135 60.0
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 1.1e-41 173.7 134 58.2
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 1.2e-40 170.2 138 58.0
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 4.4e-40 168.3 138 56.5
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 1.7e-39 166.4 114 67.5
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 1.7e-39 166.4 114 67.5
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 3.7e-39 165.2 163 52.1
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 4.9e-39 164.9 136 58.1
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 4.9e-39 164.9 136 58.1
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 1.1e-38 163.7 139 54.7
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 9.2e-38 160.6 112 68.8
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 2.7e-37 159.1 111 64.0
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 4.3e-35 151.8 134 58.2
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 4.7e-34 148.3 100 67.0
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 6.2e-34 147.9 120 60.0
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 9.9e-32 140.6 146 52.7
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.5e-27 126.7 132 50.8
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 4.3e-27 125.2 138 47.1
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 4.3e-27 125.2 79 72.2
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.2e-24 117.1 141 43.3
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 2.6e-24 115.9 134 46.3
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 3.4e-24 115.5 137 46.0
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 7.6e-24 114.4 99 53.5
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 9.9e-24 114.0 99 52.5
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 4.9e-23 111.7 138 44.9
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 1.1e-22 110.5 145 41.4
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 1.2e-21 107.1 137 42.3
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 6.0e-21 104.8 83 55.4
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 1.1e-19 100.5 137 40.9
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.9e-19 99.8 144 37.5
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 8.4e-15 84.3 112 43.8
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 3.2e-14 82.4 89 47.2
C04p44040 Brassica napus HOM05D004462 ORTHO05D005231 2.1e-13 79.7 55 67.3
C04p44070 Brassica napus HOM05D004462 ORTHO05D005231 2.1e-13 79.7 55 67.3
C04p44110 Brassica napus HOM05D004462 ORTHO05D005231 2.1e-13 79.7 55 67.3
BcaC02g09555 Brassica carinata HOM05D000188 ORTHO05D005231 2.7e-13 79.3 55 67.3
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 4.6e-13 78.6 54 59.3
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 7.9e-13 77.8 99 43.4
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 3.0e-12 75.9 65 52.3
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 3.9e-12 75.5 59 55.9
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 1.1e-11 73.9 113 35.4
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 2.4e-09 66.2 117 35.9
TAR371G1025 Trochodendron aralioides HOM05D004462 ORTHO05D005231 7.6e-08 61.2 49 59.2
Sabra12G0026800 Salix brachista HOM05D001043 ORTHO05D349056 3.8e-07 58.9 51 60.8


User provided reference genes

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