Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0708100 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 1.8e-167 592.4 282 100.0
Os05g0473900 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 9.6e-161 570.1 282 96.1
Zm00001eb054520 Zea mays HOM05D005341 ORTHO05D006712 5.9e-118 427.9 264 78.4
Nn4g24210 Nelumbo nucifera HOM05D005341 ORTHO05D006712 3.8e-117 425.2 280 70.7
Hund24969 Selenicereus undatus HOM05D005341 ORTHO05D006712 3.6e-115 418.7 280 70.4
TWI31G1197 Tripterygium wilfordii HOM05D005341 ORTHO05D006712 3.6e-115 418.7 276 69.9
MSTRG.2162 Avicennia marina HOM05D005341 ORTHO05D006712 1.4e-114 416.8 284 68.3
Sc04g0005370 Simmondsia chinensis HOM05D005341 ORTHO05D006712 1.8e-114 416.4 279 69.9
Cc11_g08490 Coffea canephora HOM05D005341 ORTHO05D006712 1.1e-113 413.7 277 69.3
Lj4g0007741 Lotus japonicus HOM05D005341 ORTHO05D006712 1.1e-113 413.7 277 67.5
GSVIVG01011739001 Vitis vinifera HOM05D005341 ORTHO05D006712 1.1e-113 413.7 281 68.0
Sed0016642 Sechium edule HOM05D005341 ORTHO05D006712 2.5e-113 412.5 277 69.0
MD16G1026600 Malus domestica HOM05D005341 ORTHO05D006712 3.3e-113 412.1 277 68.2
Ah.02g127780 Amaranthus hybridus HOM05D005341 ORTHO05D006712 4.3e-113 411.8 276 70.3
Ciclev10016178m.g Citrus clementina HOM05D005341 ORTHO05D006712 4.3e-113 411.8 280 68.6
CsaV3_5G013260 Cucumis sativus L. HOM05D005341 ORTHO05D006712 9.7e-113 410.6 278 68.3
Atru.chr11.477 Acer truncatum HOM05D005341 ORTHO05D006712 1.7e-112 409.8 280 67.5
Carub.0005s0045 Capsella rubella HOM05D005341 ORTHO05D006712 1.7e-112 409.8 276 66.7
FAN07G0561 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.7e-112 409.8 278 67.6
HPP92_005883 Vanilla planifolia HOM05D005341 ORTHO05D006712 1.7e-112 409.8 281 68.3
Cpa.g.sc65.157 Carica papaya HOM05D005341 ORTHO05D006712 2.8e-112 409.1 279 68.1
Peaxi162Scf00159g01021 Petunia axillaris HOM05D005341 ORTHO05D006712 4.8e-112 408.3 280 68.2
Eucgr.B00057 Eucalyptus grandis HOM05D005341 ORTHO05D006712 6.3e-112 407.9 280 67.1
HanXRQChr17g0567271 Helianthus annuus HOM05D005341 ORTHO05D006712 6.3e-112 407.9 281 67.3
Sopen05g003820 Solanum pennellii HOM05D005341 ORTHO05D006712 6.3e-112 407.9 280 68.6
Solyc05g007970.4 Solanum lycopersicum HOM05D005341 ORTHO05D006712 8.2e-112 407.5 280 68.2
BcaC03g17044 Brassica carinata HOM05D005341 ORTHO05D006712 1.4e-111 406.8 277 66.8
C02p49590 Brassica napus HOM05D005341 ORTHO05D006712 1.4e-111 406.8 277 66.8
TPR.G38361 Trifolium pratense HOM05D005341 ORTHO05D006712 1.4e-111 406.8 280 66.1
BolC2t11038H Brassica oleracea HOM05D005341 ORTHO05D006712 1.8e-111 406.4 277 66.8
Prupe.1G326800 Prunus persica HOM05D005341 ORTHO05D006712 1.8e-111 406.4 277 68.2
CSS0010642 Camellia sinensis var. sinensis HOM05D005341 ORTHO05D006712 2.4e-111 406.0 278 68.3
Dinv14419 Davidia involucrata HOM05D005341 ORTHO05D006712 2.4e-111 406.0 280 66.4
VMungo0251G3738 Vigna mungo HOM05D005341 ORTHO05D006712 2.4e-111 406.0 275 66.9
A02p32060 Brassica napus HOM05D005341 ORTHO05D006712 3.1e-111 405.6 277 66.8
BraA02t08217Z Brassica rapa HOM05D005341 ORTHO05D006712 3.1e-111 405.6 277 66.8
FAN22G2374 Fragaria x ananassa HOM05D005341 ORTHO05D006712 3.1e-111 405.6 278 66.9
QL01p001313 Quercus lobata HOM05D005341 ORTHO05D006712 3.1e-111 405.6 276 67.4
FvH4_4g32640 Fragaria vesca HOM05D005341 ORTHO05D006712 4.1e-111 405.2 278 66.9
FAN12G2540 Fragaria x ananassa HOM05D005341 ORTHO05D006712 4.1e-111 405.2 278 66.9
Glyma.07G219300 Glycine max HOM05D005341 ORTHO05D006712 4.1e-111 405.2 277 66.8
PGSC0003DMG400018423 Solanum tuberosum HOM05D005341 ORTHO05D006712 4.1e-111 405.2 280 67.9
PGR044G1964 Punica granatum HOM05D005341 ORTHO05D006712 5.3e-111 404.8 278 67.3
THA.LOC104823806 Tarenaya hassleriana HOM05D005341 ORTHO05D006712 5.3e-111 404.8 277 66.8
CAN.G1298.33 Capsicum annuum HOM05D005341 ORTHO05D006712 6.9e-111 404.4 277 68.2
Lalb_Chr16g0385061 Lupinus albus HOM05D005341 ORTHO05D006712 9.1e-111 404.1 277 65.3
Potri.006G222800 Populus trichocarpa HOM05D005341 ORTHO05D006712 9.1e-111 404.1 279 66.3
ATR0564G155 Amborella trichopoda HOM05D005341 ORTHO05D006712 1.2e-110 403.7 275 68.0
CDE05G0416 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 1.2e-110 403.7 280 66.1
Glyma.20G017500 Glycine max HOM05D005341 ORTHO05D006712 1.2e-110 403.7 277 66.8
Lsat_1_v5_gn_4_13500 Lactuca sativa HOM05D005341 ORTHO05D006712 1.2e-110 403.7 277 66.4
MELO3C026795.2 Cucumis melo HOM05D005341 ORTHO05D006712 1.5e-110 403.3 278 68.0
Thhalv10000985m.g Eutrema salsugineum HOM05D005341 ORTHO05D006712 1.5e-110 403.3 276 64.5
arahy.Tifrunner.gnm1.ann1.LQU7YY Arachis hypogaea HOM05D005341 ORTHO05D006712 2.0e-110 402.9 277 66.4
ClCG11G001200 Citrullus lanatus HOM05D005341 ORTHO05D006712 2.0e-110 402.9 275 67.6
MD13G1023900 Malus domestica HOM05D005341 ORTHO05D006712 2.0e-110 402.9 277 69.0
RcHm_v2.0_Chr4g0441521 Rosa chinensis HOM05D005341 ORTHO05D006712 2.0e-110 402.9 278 66.9
DCAR_007306 Daucus carota HOM05D005341 ORTHO05D006712 2.6e-110 402.5 277 66.1
Thecc.02G283300 Theobroma cacao HOM05D005341 ORTHO05D006712 2.6e-110 402.5 280 67.1
CiPaw.05G196000 Carya illinoinensis HOM05D005341 ORTHO05D006712 3.4e-110 402.1 276 67.4
AL5G10480 Arabidopsis lyrata HOM05D005341 ORTHO05D006712 5.9e-110 401.4 277 65.7
Sp2g12940 Schrenkiella parvula HOM05D005341 ORTHO05D006712 7.7e-110 401.0 276 64.9
unitig_27.g25178 Utricularia gibba HOM05D005341 ORTHO05D006712 7.7e-110 401.0 284 66.2
Duzib268G0076 Durio zibethinus HOM05D005341 ORTHO05D006712 1.0e-109 400.6 280 67.1
Psat7g129280 Pisum sativum HOM05D005341 ORTHO05D006712 1.3e-109 400.2 280 64.3
CARHR144010 Cardamine hirsuta HOM05D005341 ORTHO05D006712 2.2e-109 399.4 276 65.6
PSO478G3305 Papaver somniferum HOM05D005341 ORTHO05D006712 2.2e-109 399.4 276 67.4
COL.COLO4_13155 Corchorus olitorius HOM05D005341 ORTHO05D006712 2.9e-109 399.1 280 66.1
Actinidia36662 Actinidia chinensis HOM05D005341 ORTHO05D006712 6.5e-109 397.9 278 65.8
AT2G01490 Arabidopsis thaliana HOM05D005341 ORTHO05D006712 6.5e-109 397.9 276 65.6
Manes.15G129000 Manihot esculenta HOM05D005341 ORTHO05D006712 6.5e-109 397.9 280 65.7
BcaB07g30394 Brassica carinata HOM05D005341 ORTHO05D006712 1.4e-108 396.7 276 65.2
EL10Ac3g06547 Beta vulgaris HOM05D005341 ORTHO05D006712 1.9e-108 396.4 265 70.6
AUR62039516 Chenopodium quinoa HOM05D005341 ORTHO05D006712 1.9e-108 396.4 264 70.8
Aqoxy3G00085 Aquilegia oxysepala HOM05D005341 ORTHO05D006712 5.5e-108 394.8 305 62.3
Medtr4g084560 Medicago truncatula HOM05D005341 ORTHO05D006712 2.1e-107 392.9 288 64.9
PSO017G2475 Papaver somniferum HOM05D005341 ORTHO05D006712 2.7e-107 392.5 276 66.7
TAR622G0920 Trochodendron aralioides HOM05D005341 ORTHO05D006712 4.7e-107 391.7 265 69.1
Duzib251G0346 Durio zibethinus HOM05D005341 ORTHO05D006712 1.0e-106 390.6 280 65.7
Gorai.002G178300 Gossypium raimondii HOM05D005341 ORTHO05D006712 1.8e-106 389.8 277 65.0
Lj6A744T53 Lonicera japonica HOM05D005341 ORTHO05D006712 3.9e-106 388.7 282 64.5
SEGI_27003 Sequoiadendron giganteum HOM05D005341 ORTHO05D006712 3.9e-106 388.7 276 63.8
Gohir.D01G144400 Gossypium hirsutum HOM05D005341 ORTHO05D006712 5.1e-106 388.3 277 64.6
Aa31LG2G8430 Aethionema arabicum HOM05D005341 ORTHO05D006712 8.8e-106 387.5 284 63.0
ECA234G4311 Erigeron canadensis HOM05D005341 ORTHO05D006712 1.5e-105 386.7 281 65.8
Nitab4.5_0000688g0150 Nicotiana tabacum HOM05D005341 ORTHO05D006712 3.3e-105 385.6 269 67.3
Gohir.A01G151200 Gossypium hirsutum HOM05D005341 ORTHO05D006712 1.3e-104 383.6 279 63.4
AUR62014184 Chenopodium quinoa HOM05D005341 ORTHO05D006712 3.7e-104 382.1 250 71.6
Phvul.002G095700 Phaseolus vulgaris HOM05D005341 ORTHO05D006712 1.2e-102 377.1 247 69.6
SalBow8G3124 Salvia bowleyana HOM05D005341 ORTHO05D006712 2.0e-102 376.3 278 63.7
SalBow8G3488 Salvia bowleyana HOM05D005341 ORTHO05D006712 2.0e-102 376.3 278 63.7
Sabra06G0172200 Salix brachista HOM05D005341 ORTHO05D006712 2.9e-101 372.5 306 58.5
Zm00001eb216580 Zea mays HOM05D005341 ORTHO05D006712 2.9e-101 372.5 265 72.1
Ca_18745_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 5.0e-101 371.7 275 63.3
Oeu062657.1 Olea europaea HOM05D005341 ORTHO05D006712 5.0e-101 371.7 266 66.2
SHI36659 Sapria himalayana HOM05D005341 ORTHO05D006712 5.0e-101 371.7 269 63.9
Migut.E00437 Erythranthe guttata HOM05D005341 ORTHO05D006712 9.4e-100 367.5 280 62.5
Rhsim09G0096600 Rhododendron simsii HOM05D005341 ORTHO05D006712 7.4e-97 357.8 291 59.1
BolC9t55880H Brassica oleracea HOM05D005341 ORTHO05D006712 1.8e-95 353.2 249 63.9
C09p30150 Brassica napus HOM05D005341 ORTHO05D006712 7.0e-95 351.3 249 63.9
Ca_29576_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 1.2e-94 350.5 263 63.5
SMO358G0398 Selaginella moellendorffii HOM05D005341 ORTHO05D006712 3.5e-94 349.0 259 62.2
CANSAT25G0384 Cannabis sativa HOM05D005341 ORTHO05D006712 3.8e-93 345.5 236 69.1
SGA_v2.0_scaffold39G15193 Striga asiatica HOM05D005341 ORTHO05D006712 2.5e-92 342.8 236 68.6
Mapoly0012s0126 Marchantia polymorpha HOM05D005341 ORTHO05D006712 2.0e-89 333.2 279 57.7
Pp3c7_14500 Physcomitrium patens HOM05D005341 ORTHO05D006712 5.4e-87 325.1 277 54.5
MBI12_g12675_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 2.7e-86 322.8 190 76.8
BcaC04g21581 Brassica carinata HOM05D005341 ORTHO05D006712 2.9e-85 319.3 246 59.3
Cre16.g673281 Chlamydomonas reinhardtii HOM05D005341 ORTHO05D006712 3.6e-83 312.4 283 54.4
Zm00001eb409650 Zea mays HOM05D005341 ORTHO05D006712 2.3e-82 309.7 167 85.0
Zm00001eb142690 Zea mays HOM05D005341 ORTHO05D006712 1.5e-81 307.0 167 84.4
Zm00001eb341930 Zea mays HOM05D005341 ORTHO05D006712 1.7e-80 303.5 176 81.2
CBR_g31524 Chara braunii HOM05D005341 ORTHO05D006712 3.7e-80 302.4 264 55.7
vmacro10652 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 2.2e-72 276.6 414 38.6
MCO03G480 Micromonas commoda HOM05D005341 ORTHO05D006712 3.5e-70 269.2 276 47.8
AagrBONN_evm.TU.Sc2ySwM_228.566 Anthoceros agrestis HOM05D005341 ORTHO05D006712 3.3e-68 262.7 177 65.5
PRCOL_00000921 Prasinoderma coloniale HOM05D005341 ORTHO05D006712 1.0e-66 257.7 297 46.8
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 2.3e-66 256.5 166 74.7
Oeu018602.1 Olea europaea HOM05D005341 ORTHO05D006712 4.0e-66 255.8 143 76.9
vmacro10649 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 5.2e-66 255.4 410 37.6
unitig_29.g31871 Utricularia gibba HOM05D005341 ORTHO05D006712 4.1e-63 245.7 309 42.7
Cfa022618 Carpinus fangiana HOM05D005341 ORTHO05D006712 1.2e-54 217.6 290 42.4
AagrBONN_evm.TU.Sc2ySwM_117.3795 Anthoceros agrestis HOM05D005341 ORTHO05D006712 5.1e-53 212.2 157 59.9
FAN17G2406 Fragaria x ananassa HOM05D005341 ORTHO05D006712 4.9e-48 195.7 135 69.6
A09p23410 Brassica napus HOM05D005341 ORTHO05D006712 1.4e-47 194.1 246 43.1
Haze_10982 Corylus avellana HOM05D005341 ORTHO05D006712 1.2e-41 174.5 155 56.1
Haze_10984 Corylus avellana HOM05D005341 ORTHO05D006712 3.8e-40 169.5 138 59.4
BraA09t37941Z Brassica rapa HOM05D005341 ORTHO05D006712 8.4e-40 168.3 246 39.4
Haze_27483 Corylus avellana HOM05D005341 ORTHO05D006712 1.2e-38 164.5 219 41.1
Zm00001eb025440 Zea mays HOM05D005341 ORTHO05D006712 3.5e-30 136.3 73 82.2
Zm00001eb049700 Zea mays HOM05D005341 ORTHO05D006712 3.5e-30 136.3 73 82.2
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 1.1e-23 114.8 75 66.7
BcaB07g30743 Brassica carinata HOM05D005341 ORTHO05D006712 2.4e-23 113.6 110 45.5
FAN18G3043 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.4e-23 113.6 80 70.0
FAN24G2017 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.4e-23 113.6 89 64.0
FvH4_3g28840 Fragaria vesca HOM05D005341 ORTHO05D006712 1.2e-22 111.3 85 64.7
RcHm_v2.0_Chr6g0283021 Rosa chinensis HOM05D006769 ORTHO05D008522 1.6e-22 110.9 70 70.0
FAN01G1793 Fragaria x ananassa HOM05D000061 ORTHO05D003487 1.5e-20 104.4 91 57.1
CDE11G1102 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 1.1e-12 78.2 85 50.6
MBI12_g12674_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 1.1e-12 78.2 76 51.3
Actinidia14980 Actinidia chinensis HOM05D005341 ORTHO05D006712 1.4e-10 71.2 52 63.5
CBR_g37149 Chara braunii HOM05D005341 ORTHO05D017343 3.4e-09 66.6 175 30.9
GSVIVG01029848001 Vitis vinifera HOM05D000172 ORTHO05D000273 2.9e-08 63.5 58 51.7
FAN21G0384 Fragaria x ananassa HOM05D005341 ORTHO05D006712 5.5e-07 59.3 80 47.5


User provided reference genes

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