Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0703200 Oryza sativa ssp. japonica HOM05D000168 ORTHO05D001942 8.5e-60 233.4 113 100.0
Zm00001eb054260 Zea mays HOM05D000168 ORTHO05D001942 5.6e-27 124.4 67 88.1
Os02g0283800 Oryza sativa ssp. japonica HOM05D000168 ORTHO05D001942 3.7e-23 111.7 64 82.8
Zm00001eb237190 Zea mays HOM05D000168 ORTHO05D001942 1.4e-22 109.8 85 64.7
HPP92_004096 Vanilla planifolia HOM05D000168 ORTHO05D001942 1.6e-18 96.3 67 68.7
Lalb_Chr07g0185211 Lupinus albus HOM05D000168 ORTHO05D001942 1.5e-16 89.7 67 62.7
Cc07_g15010 Coffea canephora HOM05D000168 ORTHO05D001942 2.0e-16 89.4 67 59.7
Nn5g30087 Nelumbo nucifera HOM05D000168 ORTHO05D001942 5.8e-16 87.8 67 61.2
TPR.G6247 Trifolium pratense HOM05D000168 ORTHO05D001942 7.5e-16 87.4 67 61.2
HPP92_019308 Vanilla planifolia HOM05D000168 ORTHO05D001942 7.5e-16 87.4 67 62.7
Glyma.05G177500 Glycine max HOM05D000168 ORTHO05D001942 1.7e-15 86.3 67 58.2
Glyma.08G134600 Glycine max HOM05D000168 ORTHO05D001942 1.7e-15 86.3 67 58.2
Aqoxy6G00770_Aqoxy6G00772 Aquilegia oxysepala HOM05D000168 ORTHO05D001942 2.2e-15 85.9 67 61.2
Potri.005G074200 Populus trichocarpa HOM05D000168 ORTHO05D001942 2.9e-15 85.5 85 52.9
VMungo0251G3677 Vigna mungo HOM05D000168 ORTHO05D001942 2.9e-15 85.5 67 61.2
Ca_30099_v3 Cicer arietinum L. HOM05D000168 ORTHO05D001942 3.7e-15 85.1 65 63.1
Migut.H02351 Erythranthe guttata HOM05D000168 ORTHO05D001942 4.9e-15 84.7 67 58.2
Solyc11g008960.3 Solanum lycopersicum HOM05D000168 ORTHO05D001942 4.9e-15 84.7 67 56.7
Medtr8g090140 Medicago truncatula HOM05D000168 ORTHO05D001942 6.4e-15 84.3 67 62.7
Lalb_Chr12g0203911 Lupinus albus HOM05D000168 ORTHO05D001942 1.1e-14 83.6 67 58.2
Nitab4.5_0004390g0070 Nicotiana tabacum HOM05D000168 ORTHO05D001942 1.1e-14 83.6 67 56.7
TAR381G0909 Trochodendron aralioides HOM05D000168 ORTHO05D001942 1.1e-14 83.6 67 58.2
COL.COLO4_27267 Corchorus olitorius HOM05D000168 ORTHO05D001942 1.4e-14 83.2 67 59.7
MD15G1323000 Malus domestica HOM05D000168 ORTHO05D001942 1.4e-14 83.2 91 46.2
Phvul.002G257000 Phaseolus vulgaris HOM05D000168 ORTHO05D001942 1.4e-14 83.2 67 56.7
arahy.Tifrunner.gnm1.ann1.0F5MQQ Arachis hypogaea HOM05D000168 ORTHO05D001942 1.9e-14 82.8 88 48.9
Rhsim08G0011300 Rhododendron simsii HOM05D000168 ORTHO05D001942 1.9e-14 82.8 67 59.7
Eucgr.H04770 Eucalyptus grandis HOM05D000168 ORTHO05D001942 2.4e-14 82.4 67 59.7
TWI74G0394 Tripterygium wilfordii HOM05D000168 ORTHO05D001942 2.4e-14 82.4 65 61.5
PGSC0003DMG400016164 Solanum tuberosum HOM05D000168 ORTHO05D001942 4.1e-14 81.6 67 55.2
Sc03g0002010 Simmondsia chinensis HOM05D000168 ORTHO05D001942 5.4e-14 81.3 67 58.2
CAN.G1177.6 Capsicum annuum HOM05D000168 ORTHO05D001942 9.2e-14 80.5 67 53.7
Lj4g0014693 Lotus japonicus HOM05D000168 ORTHO05D001942 9.2e-14 80.5 65 56.9
ATR0782G152 Amborella trichopoda HOM05D000168 ORTHO05D001942 1.2e-13 80.1 99 46.5
Duzib147G0665 Durio zibethinus HOM05D000168 ORTHO05D001942 1.2e-13 80.1 67 56.7
Gohir.D11G220400 Gossypium hirsutum HOM05D000168 ORTHO05D001942 1.6e-13 79.7 67 53.7
Gorai.007G236500 Gossypium raimondii HOM05D000168 ORTHO05D001942 1.6e-13 79.7 67 53.7
Nn1g05373 Nelumbo nucifera HOM05D000168 ORTHO05D001942 1.6e-13 79.7 65 60.0
Thecc.01G099300 Theobroma cacao HOM05D000168 ORTHO05D001942 1.6e-13 79.7 67 55.2
Thhalv10013001m.g Eutrema salsugineum HOM05D000168 ORTHO05D001942 2.0e-13 79.3 60 60.0
Peaxi162Scf00383g00311 Petunia axillaris HOM05D000168 ORTHO05D001942 2.0e-13 79.3 60 56.7
SalBow3G4218 Salvia bowleyana HOM05D000168 ORTHO05D001942 2.0e-13 79.3 67 55.2
TAR628G1635 Trochodendron aralioides HOM05D000168 ORTHO05D001942 2.7e-13 79.0 67 55.2
MSTRG.2572 Avicennia marina HOM05D000168 ORTHO05D001942 4.6e-13 78.2 67 53.7
CSS0040183 Camellia sinensis var. sinensis HOM05D000168 ORTHO05D001942 4.6e-13 78.2 67 56.7
Glyma.11G240900 Glycine max HOM05D000168 ORTHO05D001942 4.6e-13 78.2 70 57.1
MBI02_g35752_MAGBIO Magnolia biondii HOM05D000168 ORTHO05D001942 4.6e-13 78.2 99 41.4
Gohir.A11G202700 Gossypium hirsutum HOM05D000168 ORTHO05D001942 6.0e-13 77.8 67 52.2
Glyma.18G016400 Glycine max HOM05D000168 ORTHO05D001942 7.8e-13 77.4 70 55.7
Psat7g055880 Pisum sativum HOM05D000168 ORTHO05D001942 7.8e-13 77.4 67 53.7
RcHm_v2.0_Chr2g0113091 Rosa chinensis HOM05D000168 ORTHO05D001942 7.8e-13 77.4 67 55.2
CANSAT01G1112 Cannabis sativa HOM05D000168 ORTHO05D001942 1.0e-12 77.0 67 55.2
FvH4_1g20640 Fragaria vesca HOM05D000168 ORTHO05D001942 1.0e-12 77.0 67 55.2
FAN19G1276 Fragaria x ananassa HOM05D000168 ORTHO05D001942 1.0e-12 77.0 67 55.2
Haze_24902 Corylus avellana HOM05D000168 ORTHO05D001942 1.3e-12 76.6 67 53.7
PGR102G2682 Punica granatum HOM05D000168 ORTHO05D001942 1.3e-12 76.6 67 56.7
Ca_17745_v3 Cicer arietinum L. HOM05D000168 ORTHO05D001942 1.7e-12 76.3 45 71.1
TWI77G0576 Tripterygium wilfordii HOM05D000168 ORTHO05D001942 2.3e-12 75.9 65 56.9
AL6G20790 Arabidopsis lyrata HOM05D000168 ORTHO05D001942 3.0e-12 75.5 60 56.7
FAN23G0112 Fragaria x ananassa HOM05D000168 ORTHO05D001942 3.0e-12 75.5 67 53.7
FAN23G0372 Fragaria x ananassa HOM05D000168 ORTHO05D001942 3.0e-12 75.5 67 53.7
Lsat_1_v5_gn_5_34601 Lactuca sativa HOM05D000168 ORTHO05D001942 3.0e-12 75.5 67 52.2
Psat5g090440 Pisum sativum HOM05D000168 ORTHO05D001942 3.0e-12 75.5 70 55.7
PGSC0003DMG400021789 Solanum tuberosum HOM05D000168 ORTHO05D001942 3.0e-12 75.5 67 52.2
TPR.G16020 Trifolium pratense HOM05D000168 ORTHO05D001942 3.0e-12 75.5 64 57.8
GSVIVG01006038001 Vitis vinifera HOM05D000168 ORTHO05D001942 3.0e-12 75.5 67 53.7
A02p00420 Brassica napus HOM05D000168 ORTHO05D001942 3.9e-12 75.1 60 58.3
BolC2t06400H Brassica oleracea HOM05D000168 ORTHO05D001942 3.9e-12 75.1 60 58.3
FAN26G2176 Fragaria x ananassa HOM05D000168 ORTHO05D001942 3.9e-12 75.1 67 53.7
Lj6g0018380 Lotus japonicus HOM05D000168 ORTHO05D001942 3.9e-12 75.1 69 55.1
Medtr3g087060 Medicago truncatula HOM05D000168 ORTHO05D001942 3.9e-12 75.1 48 68.8
Sabra05G0060900 Salix brachista HOM05D000168 ORTHO05D001942 3.9e-12 75.1 67 53.7
Sed0001447 Sechium edule HOM05D000168 ORTHO05D001942 3.9e-12 75.1 57 61.4
AUR62003809 Chenopodium quinoa HOM05D000168 ORTHO05D001942 5.0e-12 74.7 67 52.2
Potri.007G094500 Populus trichocarpa HOM05D000168 ORTHO05D001942 5.0e-12 74.7 67 52.2
CAN.G233.1 Capsicum annuum HOM05D000168 ORTHO05D001942 6.6e-12 74.3 67 50.7
DCAR_003490 Daucus carota HOM05D000168 ORTHO05D001942 6.6e-12 74.3 67 47.8
BcaB05g21477 Brassica carinata HOM05D000168 ORTHO05D001942 8.6e-12 73.9 60 56.7
BcaC03g13305 Brassica carinata HOM05D000168 ORTHO05D001942 8.6e-12 73.9 60 56.7
C02p04360 Brassica napus HOM05D000168 ORTHO05D001942 8.6e-12 73.9 60 56.7
CARHR203010 Cardamine hirsuta HOM05D000168 ORTHO05D001942 8.6e-12 73.9 55 60.0
Ciclev10027400m.g Citrus clementina HOM05D000168 ORTHO05D001942 8.6e-12 73.9 65 53.8
Dinv13202 Davidia involucrata HOM05D000168 ORTHO05D001942 8.6e-12 73.9 67 53.7
Duzib264G0839 Durio zibethinus HOM05D000168 ORTHO05D001942 8.6e-12 73.9 67 50.7
MD01G1032200 Malus domestica HOM05D000168 ORTHO05D001942 8.6e-12 73.9 84 46.4
Nitab4.5_0000897g0080 Nicotiana tabacum HOM05D000168 ORTHO05D001942 8.6e-12 73.9 67 49.3
THA.LOC104801711 Tarenaya hassleriana HOM05D000168 ORTHO05D001942 8.6e-12 73.9 67 53.7
AT5G10290 Arabidopsis thaliana HOM05D000168 ORTHO05D001942 1.1e-11 73.6 60 56.7
BraA02t05026Z Brassica rapa HOM05D000168 ORTHO05D001942 1.1e-11 73.6 60 56.7
ClCG07G017340 Citrullus lanatus HOM05D000168 ORTHO05D001942 1.1e-11 73.6 66 56.1
Prupe.6G189000 Prunus persica HOM05D000168 ORTHO05D001942 1.1e-11 73.6 67 49.3
Carub.0006s0875 Capsella rubella HOM05D000168 ORTHO05D001942 1.5e-11 73.2 60 55.0
Peaxi162Scf00611g00018 Petunia axillaris HOM05D000168 ORTHO05D001942 1.5e-11 73.2 67 47.8
CiPaw.04G101100 Carya illinoinensis HOM05D000168 ORTHO05D001942 1.9e-11 72.8 65 53.8
ECA247G2673 Erigeron canadensis HOM05D000168 ORTHO05D001942 1.9e-11 72.8 68 50.0
Nitab4.5_0003662g0010 Nicotiana tabacum HOM05D000168 ORTHO05D001942 1.9e-11 72.8 99 38.4
vmacro18593 Vaccinium macrocarpon HOM05D000168 ORTHO05D001942 1.9e-11 72.8 61 57.4
Oeu015886.1 Olea europaea HOM05D000168 ORTHO05D001942 2.5e-11 72.4 70 54.3
Sp6g33140 Schrenkiella parvula HOM05D000168 ORTHO05D001942 2.5e-11 72.4 60 53.3
Cfa002635 Carpinus fangiana HOM05D000168 ORTHO05D001942 3.3e-11 72.0 67 49.3
FAN28G1671 Fragaria x ananassa HOM05D000168 ORTHO05D001942 3.3e-11 72.0 67 52.2
Manes.13G094300 Manihot esculenta HOM05D000168 ORTHO05D001942 3.3e-11 72.0 67 50.7
Solyc03g078520.4 Solanum lycopersicum HOM05D000168 ORTHO05D001942 3.3e-11 72.0 70 50.0
CsaV3_4G004550 Cucumis sativus L. HOM05D000168 ORTHO05D001942 4.3e-11 71.6 56 57.1
CsaV3_UNG116960 Cucumis sativus L. HOM05D000168 ORTHO05D001942 4.3e-11 71.6 56 57.1
CsaV3_UNG223630 Cucumis sativus L. HOM05D000168 ORTHO05D001942 4.3e-11 71.6 56 57.1
Phvul.001G252800 Phaseolus vulgaris HOM05D000168 ORTHO05D001942 4.3e-11 71.6 69 50.7
HanXRQChr15g0487321 Helianthus annuus HOM05D000168 ORTHO05D001942 5.6e-11 71.2 67 52.2
Nitab4.5_0009796g0050 Nicotiana tabacum HOM05D000168 ORTHO05D001942 5.6e-11 71.2 45 64.4
Sabra07G0078100 Salix brachista HOM05D000168 ORTHO05D001942 5.6e-11 71.2 67 49.3
EL10Ac6g15120 Beta vulgaris HOM05D000168 ORTHO05D001942 7.3e-11 70.9 64 51.6
Sopen03g021400 Solanum pennellii HOM05D000168 ORTHO05D001942 7.3e-11 70.9 70 50.0
Aa31LG3G16860 Aethionema arabicum HOM05D000168 ORTHO05D001942 9.5e-11 70.5 60 55.0
Rhsim08G0011400 Rhododendron simsii HOM05D000168 ORTHO05D001942 9.5e-11 70.5 67 50.7
GSVIVG01002369001 Vitis vinifera HOM05D000168 ORTHO05D001942 9.5e-11 70.5 67 46.3
Gorai.007G060500 Gossypium raimondii HOM05D000168 ORTHO05D001942 1.2e-10 70.1 67 47.8
Lj4C896T7 Lonicera japonica HOM05D000168 ORTHO05D001942 1.2e-10 70.1 67 50.7
QL06p049054 Quercus lobata HOM05D000168 ORTHO05D001942 1.2e-10 70.1 67 52.2
MD15G1322900 Malus domestica HOM05D000168 ORTHO05D001942 1.6e-10 69.7 91 42.9
Lalb_Chr11g0075411 Lupinus albus HOM05D000168 ORTHO05D001942 2.1e-10 69.3 69 50.7
CSS0002072 Camellia sinensis var. sinensis HOM05D000168 ORTHO05D001942 2.8e-10 68.9 67 53.7
Thhalv10003847m.g Eutrema salsugineum HOM05D000168 ORTHO05D001942 2.8e-10 68.9 60 53.3
VMungo1383G1478 Vigna mungo HOM05D000168 ORTHO05D001942 2.8e-10 68.9 69 49.3
AT5G65240 Arabidopsis thaliana HOM05D000168 ORTHO05D001942 4.7e-10 68.2 65 49.2
Gohir.A02G142500 Gossypium hirsutum HOM05D000168 ORTHO05D001942 4.7e-10 68.2 67 47.8
Atru.chr4.21 Acer truncatum HOM05D000168 ORTHO05D001942 6.2e-10 67.8 68 48.5
CSS0034186 Camellia sinensis var. sinensis HOM05D000168 ORTHO05D001942 6.2e-10 67.8 83 45.8
AUR62001993 Chenopodium quinoa HOM05D000168 ORTHO05D001942 8.1e-10 67.4 67 47.8
Gohir.D11G055200 Gossypium hirsutum HOM05D000168 ORTHO05D001942 1.1e-09 67.0 67 46.3
Aa31LG1G16720 Aethionema arabicum HOM05D000168 ORTHO05D001942 1.8e-09 66.2 67 47.8
Migut.L00144 Erythranthe guttata HOM05D000168 ORTHO05D001942 1.8e-09 66.2 67 44.8
Gohir.D03G037900 Gossypium hirsutum HOM05D000168 ORTHO05D001942 1.8e-09 66.2 67 47.8
Gorai.003G039900 Gossypium raimondii HOM05D000168 ORTHO05D001942 1.8e-09 66.2 67 47.8
Lj2C545G1 Lonicera japonica HOM05D000168 ORTHO05D001942 1.8e-09 66.2 45 62.2
CARHR279190 Cardamine hirsuta HOM05D000168 ORTHO05D001942 2.3e-09 65.9 67 46.3
AL8G42790 Arabidopsis lyrata HOM05D000168 ORTHO05D001942 3.1e-09 65.5 68 48.5
Sp2g28340 Schrenkiella parvula HOM05D000168 ORTHO05D001942 3.1e-09 65.5 48 56.2
CiPaw.03G143100 Carya illinoinensis HOM05D000168 ORTHO05D001942 4.0e-09 65.1 66 50.0
CDE10G0646 Ceratophyllum demersum HOM05D000168 ORTHO05D001942 6.8e-09 64.3 61 52.5
Hund13616 Selenicereus undatus HOM05D000168 ORTHO05D001942 8.9e-09 63.9 55 56.4
SGA_v2.0_scaffold335G49116 Striga asiatica HOM05D000168 ORTHO05D001942 8.9e-09 63.9 46 56.5
TPR.G15998 Trifolium pratense HOM05D000168 ORTHO05D001942 8.9e-09 63.9 76 47.4
BcaB02g09888 Brassica carinata HOM05D000168 ORTHO05D001942 1.2e-08 63.5 65 47.7
A06p32090 Brassica napus HOM05D000168 ORTHO05D001942 1.5e-08 63.2 60 46.7
BraA06t26138Z Brassica rapa HOM05D000168 ORTHO05D001942 1.5e-08 63.2 60 46.7
arahy.Tifrunner.gnm1.ann1.61PLD2 Arachis hypogaea HOM05D000168 ORTHO05D001942 2.0e-08 62.8 68 44.1
Haze_24905 Corylus avellana HOM05D000168 ORTHO05D001942 2.0e-08 62.8 60 50.0
CsaV3_UNG160230 Cucumis sativus L. HOM05D000168 ORTHO05D001942 2.0e-08 62.8 38 68.4
PSO781G0060 Papaver somniferum HOM05D000168 ORTHO05D001942 2.0e-08 62.8 60 48.3
CsaV3_4G004560 Cucumis sativus L. HOM05D000168 ORTHO05D001942 5.8e-08 61.2 55 50.9
CsaV3_UNG118960 Cucumis sativus L. HOM05D000168 ORTHO05D001942 5.8e-08 61.2 55 50.9
CsaV3_UNG160210 Cucumis sativus L. HOM05D000168 ORTHO05D001942 5.8e-08 61.2 55 50.9
CsaV3_UNG223610 Cucumis sativus L. HOM05D000168 ORTHO05D001942 5.8e-08 61.2 55 50.9
arahy.Tifrunner.gnm1.ann1.0E4EG2 Arachis hypogaea HOM05D000168 ORTHO05D001942 7.5e-08 60.8 44 56.8
Carub.0008s2611 Capsella rubella HOM05D000168 ORTHO05D001942 7.5e-08 60.8 58 50.0
Actinidia28858 Actinidia chinensis HOM05D000168 ORTHO05D001942 9.9e-08 60.5 62 46.8
BcaC01g02760 Brassica carinata HOM05D000168 ORTHO05D001942 9.9e-08 60.5 60 46.7
C03p60840 Brassica napus HOM05D000168 ORTHO05D001942 9.9e-08 60.5 60 46.7
BolC3t18341H Brassica oleracea HOM05D000168 ORTHO05D001942 9.9e-08 60.5 60 46.7
PSO541G0647 Papaver somniferum HOM05D000168 ORTHO05D001942 9.9e-08 60.5 60 45.0
THA.LOC104798902 Tarenaya hassleriana HOM05D000168 ORTHO05D001942 1.3e-07 60.1 65 44.6
Hund13617 Selenicereus undatus HOM05D000168 ORTHO05D001942 1.7e-07 59.7 59 50.8
MELO3C017610.2 Cucumis melo HOM05D000168 ORTHO05D001942 2.2e-07 59.3 55 49.1
SGA_v2.0_scaffold335G49118 Striga asiatica HOM05D000168 ORTHO05D001942 2.2e-07 59.3 44 54.5
HPP92_023692 Vanilla planifolia HOM05D000168 ORTHO05D001118 6.4e-07 57.8 66 42.4
MBI05_g39044_MAGBIO Magnolia biondii HOM05D000168 ORTHO05D001942 8.3e-07 57.4 65 43.1
Pp3c11_5590 Physcomitrium patens HOM05D000168 ORTHO05D001118 8.3e-07 57.4 60 41.7
Ah.02g122610 Amaranthus hybridus HOM05D000168 ORTHO05D001942 1.1e-06 57.0 46 52.2
SalBow5G4208 Salvia bowleyana HOM05D000168 ORTHO05D001942 1.4e-06 56.6 45 48.9
HPP92_023675 Vanilla planifolia HOM05D000168 ORTHO05D001118 1.9e-06 56.2 66 42.4
Ah.03g143800 Amaranthus hybridus HOM05D000168 ORTHO05D001942 2.4e-06 55.8 45 46.7
Cfa002639 Carpinus fangiana HOM05D000168 ORTHO05D001942 2.4e-06 55.8 67 41.8
Actinidia28239 Actinidia chinensis HOM05D000168 ORTHO05D001942 3.2e-06 55.5 67 44.8
SalBow5G4728 Salvia bowleyana HOM05D000168 ORTHO05D001942 3.2e-06 55.5 46 47.8
Manes.12G133400 Manihot esculenta HOM05D000168 ORTHO05D001942 5.4e-06 54.7 35 62.9
Sp1g29440 Schrenkiella parvula HOM05D000168 ORTHO05D001351 9.2e-06 53.9 68 38.2


User provided reference genes

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