Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 2.7e-125 452.2 262 100.0
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 3.0e-76 289.3 268 68.3
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 2.2e-71 273.1 256 67.2
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 4.8e-58 228.8 269 55.8
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 1.4e-57 227.3 263 55.9
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 5.4e-57 225.3 260 56.2
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 1.2e-56 224.2 265 57.7
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 1.2e-56 224.2 268 57.8
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 2.0e-56 223.4 265 55.8
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 5.9e-56 221.9 270 55.2
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 7.7e-56 221.5 266 56.4
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 7.7e-56 221.5 262 56.5
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 1.3e-55 220.7 273 55.3
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 1.3e-55 220.7 262 56.9
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 8.6e-55 218.0 266 54.5
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 1.9e-54 216.9 284 53.9
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 1.9e-54 216.9 265 55.5
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 2.5e-54 216.5 267 55.4
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 4.2e-54 215.7 262 56.1
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 4.2e-54 215.7 272 56.2
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 5.5e-54 215.3 263 55.5
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 7.2e-54 214.9 264 55.7
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 9.5e-54 214.5 260 56.5
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 1.6e-53 213.8 266 55.6
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 2.1e-53 213.4 275 53.8
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 2.8e-53 213.0 265 55.5
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 3.6e-53 212.6 264 54.9
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 3.6e-53 212.6 265 55.1
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 3.6e-53 212.6 268 54.5
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 1.0e-52 211.1 264 53.8
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 1.0e-52 211.1 261 54.0
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 1.0e-52 211.1 266 54.5
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 1.4e-52 210.7 268 54.9
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 2.3e-52 209.9 255 55.7
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 2.3e-52 209.9 268 54.5
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 3.0e-52 209.5 267 53.9
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 3.0e-52 209.5 267 53.9
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 3.0e-52 209.5 263 54.0
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 5.2e-52 208.8 271 53.1
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 2.0e-51 206.8 268 54.5
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 2.0e-51 206.8 259 54.4
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 3.4e-51 206.1 267 52.1
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 4.4e-51 205.7 256 55.1
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 5.7e-51 205.3 259 54.8
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 5.7e-51 205.3 268 55.2
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 7.5e-51 204.9 259 54.8
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 7.5e-51 204.9 267 53.2
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 7.5e-51 204.9 263 53.6
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.3e-50 204.1 272 52.9
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 1.3e-50 204.1 263 53.2
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 1.7e-50 203.8 269 53.2
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 2.2e-50 203.4 267 52.8
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 2.8e-50 203.0 258 55.0
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 2.8e-50 203.0 258 55.0
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 2.8e-50 203.0 261 54.8
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 3.7e-50 202.6 271 52.0
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 4.9e-50 202.2 263 52.9
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 4.9e-50 202.2 267 52.8
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 4.9e-50 202.2 269 52.4
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 6.3e-50 201.8 265 52.5
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 8.3e-50 201.4 259 54.4
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 1.1e-49 201.1 261 53.3
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 1.8e-49 200.3 267 53.9
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 2.4e-49 199.9 251 55.4
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 3.2e-49 199.5 258 53.1
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 5.4e-49 198.7 265 53.2
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 5.4e-49 198.7 293 51.2
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 7.0e-49 198.4 252 52.4
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 9.2e-49 198.0 289 49.5
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 1.6e-48 197.2 260 52.7
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 2.0e-48 196.8 262 53.4
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 2.7e-48 196.4 263 52.9
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 3.5e-48 196.1 259 53.7
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 5.9e-48 195.3 254 54.3
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 5.9e-48 195.3 256 57.0
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 7.8e-48 194.9 298 49.0
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.3e-47 194.1 266 51.5
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 1.7e-47 193.7 259 53.7
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 1.7e-47 193.7 261 54.0
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 2.3e-47 193.4 262 52.3
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 2.9e-47 193.0 256 52.7
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 6.6e-47 191.8 266 51.1
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 1.1e-46 191.0 266 50.8
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 1.9e-46 190.3 265 51.7
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 1.9e-46 190.3 264 53.0
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 5.6e-46 188.7 266 51.1
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 5.6e-46 188.7 250 54.0
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 9.5e-46 188.0 269 51.3
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 1.2e-45 187.6 265 50.2
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 1.2e-45 187.6 260 51.9
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 4.7e-45 185.7 266 51.9
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 8.0e-45 184.9 260 50.8
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 2.3e-44 183.3 261 50.6
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 4.0e-44 182.6 280 48.6
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 1.2e-43 181.0 266 48.9
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 2.6e-43 179.9 265 50.9
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 4.4e-43 179.1 260 49.6
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 5.8e-43 178.7 264 50.4
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 5.8e-43 178.7 318 45.6
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 1.3e-42 177.6 268 48.9
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.3e-42 177.6 265 49.8
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 2.9e-42 176.4 274 48.5
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 4.9e-42 175.6 237 52.3
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 2.0e-40 170.2 267 48.3
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 2.7e-40 169.9 249 49.8
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 7.8e-40 168.3 274 46.7
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 1.7e-39 167.2 258 48.1
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 5.0e-39 165.6 253 46.6
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 3.3e-38 162.9 260 47.7
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 4.3e-38 162.5 260 48.1
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 9.5e-38 161.4 250 48.0
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 9.5e-38 161.4 243 49.8
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 4.7e-37 159.1 195 54.9
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 1.4e-36 157.5 260 44.6
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 8.9e-36 154.8 256 46.5
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 8.9e-36 154.8 272 44.5
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 8.9e-36 154.8 126 69.0
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 1.2e-35 154.5 269 45.4
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 2.0e-35 153.7 266 44.0
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 2.2e-34 150.2 269 45.4
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 3.7e-34 149.4 263 47.9
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 1.5e-30 137.5 316 40.5
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 1.6e-29 134.0 262 43.5
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 1.6e-29 134.0 262 43.5
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 1.8e-28 130.6 154 53.2
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 3.1e-28 129.8 284 41.5
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 1.9e-25 120.6 308 35.1
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 2.4e-25 120.2 237 43.5
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 3.2e-25 119.8 165 48.5
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 6.0e-24 115.5 91 69.2
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 1.7e-23 114.0 176 47.2
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 4.7e-21 105.9 177 48.0
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 1.5e-19 100.9 121 51.2
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 2.6e-19 100.1 194 44.8
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 4.9e-18 95.9 179 42.5
Cre09.g387300 Chlamydomonas reinhardtii HOM05D005050 ORTHO05D006198 1.6e-08 64.3 108 40.7
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 3.5e-08 63.2 57 64.9
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 7.8e-08 62.0 34 88.2
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 1.1e-06 58.2 37 70.3
Zm00001eb244490 Zea mays HOM05D001326 ORTHO05D002471 1.1e-06 58.2 32 87.5
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 2.5e-06 57.0 37 70.3
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 5.6e-06 55.8 36 69.4
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 7.3e-06 55.5 59 61.0


User provided reference genes

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