Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0699600 Oryza sativa ssp. japonica HOM05D006420 ORTHO05D008009 8.7e-125 450.3 223 100.0
Zm00001eb054020 Zea mays HOM05D006420 ORTHO05D008009 2.0e-97 359.4 213 80.8
HPP92_020377 Vanilla planifolia HOM05D006420 ORTHO05D008009 2.9e-72 275.8 209 62.7
MSTRG.5100 Avicennia marina HOM05D006420 ORTHO05D008009 1.0e-69 267.3 208 60.6
PGR083G0891 Punica granatum HOM05D006420 ORTHO05D008009 2.6e-68 262.7 208 60.1
RhsimUnG0226900 Rhododendron simsii HOM05D006420 ORTHO05D008009 4.4e-68 261.9 208 60.6
Sc06g0003280 Simmondsia chinensis HOM05D006420 ORTHO05D008009 4.4e-68 261.9 208 59.6
EL10Ac4g09358 Beta vulgaris HOM05D006420 ORTHO05D008009 1.3e-67 260.4 209 59.8
Ah.04g160290 Amaranthus hybridus HOM05D006420 ORTHO05D008009 4.9e-67 258.5 211 56.9
Cfa006594 Carpinus fangiana HOM05D006420 ORTHO05D008009 4.9e-67 258.5 209 56.9
CSS0037657 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 6.4e-67 258.1 208 57.7
CiPaw.07G020700 Carya illinoinensis HOM05D006420 ORTHO05D008009 6.4e-67 258.1 208 59.1
Nn1g02269 Nelumbo nucifera HOM05D006420 ORTHO05D008009 8.3e-67 257.7 208 58.2
CSS0034260 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 1.1e-66 257.3 208 57.7
ATR0332G062 Amborella trichopoda HOM05D006420 ORTHO05D008009 1.4e-66 256.9 210 56.7
AUR62000819 Chenopodium quinoa HOM05D006420 ORTHO05D008009 1.4e-66 256.9 209 58.4
Actinidia05697 Actinidia chinensis HOM05D006420 ORTHO05D008009 1.8e-66 256.5 208 59.1
Lsat_1_v5_gn_9_123421 Lactuca sativa HOM05D006420 ORTHO05D008009 5.4e-66 255.0 211 55.0
GSVIVG01000081001 Vitis vinifera HOM05D006420 ORTHO05D008009 5.4e-66 255.0 207 58.5
TAR365G0270 Trochodendron aralioides HOM05D006420 ORTHO05D008009 9.2e-66 254.2 208 58.7
Lalb_Chr21g0310681 Lupinus albus HOM05D006420 ORTHO05D008009 1.2e-65 253.8 208 56.2
CAN.G1034.41 Capsicum annuum HOM05D006420 ORTHO05D008009 1.6e-65 253.4 208 56.2
Manes.08G120400 Manihot esculenta HOM05D006420 ORTHO05D008009 1.6e-65 253.4 208 56.2
Nn4g26277 Nelumbo nucifera HOM05D006420 ORTHO05D008009 1.6e-65 253.4 216 55.6
Oeu010909.1 Olea europaea HOM05D006420 ORTHO05D008009 2.0e-65 253.1 208 57.2
Gohir.D08G227700 Gossypium hirsutum HOM05D006420 ORTHO05D008009 2.7e-65 252.7 208 56.2
Gorai.004G241900 Gossypium raimondii HOM05D006420 ORTHO05D008009 2.7e-65 252.7 208 56.2
Lj9A85G78 Lonicera japonica HOM05D006420 ORTHO05D008009 2.7e-65 252.7 207 57.0
Lj9A86G16 Lonicera japonica HOM05D006420 ORTHO05D008009 2.7e-65 252.7 207 57.0
Medtr1g082950 Medicago truncatula HOM05D006420 ORTHO05D008009 2.7e-65 252.7 212 57.1
Cc02_g33350 Coffea canephora HOM05D006420 ORTHO05D008009 3.5e-65 252.3 207 57.0
Glyma.10G154000 Glycine max HOM05D006420 ORTHO05D008009 3.5e-65 252.3 212 56.6
Psat6g150480 Pisum sativum HOM05D006420 ORTHO05D008009 4.6e-65 251.9 212 55.7
vmacro05011 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 4.6e-65 251.9 208 58.2
VMungo0720G1765 Vigna mungo HOM05D006420 ORTHO05D008009 4.6e-65 251.9 213 55.9
arahy.Tifrunner.gnm1.ann1.7ESY4D Arachis hypogaea HOM05D006420 ORTHO05D008009 5.9e-65 251.5 208 56.7
arahy.Tifrunner.gnm1.ann1.GHU2GX Arachis hypogaea HOM05D006420 ORTHO05D008009 7.8e-65 251.1 208 56.2
DCAR_029409 Daucus carota HOM05D006420 ORTHO05D008009 7.8e-65 251.1 217 54.8
TAR636G1821 Trochodendron aralioides HOM05D006420 ORTHO05D008009 7.8e-65 251.1 208 56.7
Gohir.A08G210900 Gossypium hirsutum HOM05D006420 ORTHO05D008009 1.0e-64 250.8 208 55.3
Migut.N01987 Erythranthe guttata HOM05D006420 ORTHO05D008009 1.3e-64 250.4 208 56.7
Migut.N02012 Erythranthe guttata HOM05D006420 ORTHO05D008009 1.3e-64 250.4 208 56.7
CANSAT54G1557 Cannabis sativa HOM05D006420 ORTHO05D008009 1.7e-64 250.0 208 56.7
Ca_10114_v3 Cicer arietinum L. HOM05D006420 ORTHO05D008009 2.3e-64 249.6 212 55.7
Peaxi162Scf00037g00513 Petunia axillaris HOM05D006420 ORTHO05D008009 2.3e-64 249.6 208 55.3
COL.COLO4_13456 Corchorus olitorius HOM05D006420 ORTHO05D008009 3.9e-64 248.8 208 54.3
RcHm_v2.0_Chr3g0454981 Rosa chinensis HOM05D006420 ORTHO05D008009 3.9e-64 248.8 215 54.9
Phvul.007G179700 Phaseolus vulgaris HOM05D006420 ORTHO05D008009 5.0e-64 248.4 212 54.2
MD12G1218500 Malus domestica HOM05D006420 ORTHO05D008009 8.6e-64 247.7 208 53.8
AUR62005152 Chenopodium quinoa HOM05D006420 ORTHO05D008009 1.1e-63 247.3 219 55.7
Dinv23938 Davidia involucrata HOM05D006420 ORTHO05D008009 1.1e-63 247.3 208 55.8
Glyma.20G234300 Glycine max HOM05D006420 ORTHO05D008009 1.1e-63 247.3 212 56.1
Hund21694 Selenicereus undatus HOM05D006420 ORTHO05D008009 1.1e-63 247.3 209 55.0
Solyc01g099130.3 Solanum lycopersicum HOM05D006420 ORTHO05D008009 1.1e-63 247.3 208 55.3
Sopen01g042690 Solanum pennellii HOM05D006420 ORTHO05D008009 1.1e-63 247.3 208 55.3
Lj5g0015213 Lotus japonicus HOM05D006420 ORTHO05D008009 1.5e-63 246.9 213 55.9
Aqoxy5G00493 Aquilegia oxysepala HOM05D006420 ORTHO05D008009 1.9e-63 246.5 211 55.9
FvH4_6g06020 Fragaria vesca HOM05D006420 ORTHO05D008009 2.5e-63 246.1 215 53.5
FAN14G2531 Fragaria x ananassa HOM05D006420 ORTHO05D008009 2.5e-63 246.1 215 53.5
Nitab4.5_0000137g0140 Nicotiana tabacum HOM05D006420 ORTHO05D008009 2.5e-63 246.1 208 54.3
Cfa006595 Carpinus fangiana HOM05D006420 ORTHO05D008009 3.3e-63 245.7 209 54.1
FAN09G3808 Fragaria x ananassa HOM05D006420 ORTHO05D008009 3.3e-63 245.7 215 53.0
HanXRQChr16g0524621 Helianthus annuus HOM05D006420 ORTHO05D008009 3.3e-63 245.7 209 54.5
MD04G1204800 Malus domestica HOM05D006420 ORTHO05D008009 5.6e-63 245.0 207 53.6
PGSC0003DMG400024687 Solanum tuberosum HOM05D006420 ORTHO05D008009 7.3e-63 244.6 208 54.3
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 7.3e-63 244.6 212 55.2
Duzib177G0348 Durio zibethinus HOM05D006420 ORTHO05D008009 1.2e-62 243.8 210 52.9
FAN05G3282 Fragaria x ananassa HOM05D006420 ORTHO05D008009 1.2e-62 243.8 215 52.6
Cpa.g.sc48.61 Carica papaya HOM05D006420 ORTHO05D008009 2.1e-62 243.0 206 53.4
FAN02G2504 Fragaria x ananassa HOM05D006420 ORTHO05D008009 2.8e-62 242.7 215 52.1
PSO210G7816 Papaver somniferum HOM05D006420 ORTHO05D008009 2.8e-62 242.7 212 54.7
Prupe.6G324800 Prunus persica HOM05D006420 ORTHO05D008009 2.8e-62 242.7 213 51.6
THA.LOC104820863 Tarenaya hassleriana HOM05D006420 ORTHO05D008009 3.6e-62 242.3 209 55.5
ClCG02G015760 Citrullus lanatus HOM05D006420 ORTHO05D008009 4.7e-62 241.9 215 53.5
Hma1.2p1_0928F.1_g237740 Hydrangea macrophylla HOM05D006420 ORTHO05D008009 6.2e-62 241.5 209 56.0
Thecc.05G302400 Theobroma cacao HOM05D006420 ORTHO05D008009 8.0e-62 241.1 208 53.4
TWI56G0424 Tripterygium wilfordii HOM05D006420 ORTHO05D008009 1.4e-61 240.4 208 54.8
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 1.8e-61 240.0 209 53.6
CsaV3_2G005340 Cucumis sativus L. HOM05D006420 ORTHO05D008009 1.8e-61 240.0 215 53.5
Atru.chr2.393 Acer truncatum HOM05D006420 ORTHO05D008009 4.0e-61 238.8 207 55.1
Duzib106G1877 Durio zibethinus HOM05D006420 ORTHO05D008009 5.2e-61 238.4 208 53.4
Thhalv10023646m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 1.2e-60 237.3 210 53.3
Pp3c16_5370 Physcomitrium patens HOM05D006420 ORTHO05D008009 1.2e-60 237.3 218 51.4
BcaC06g31763 Brassica carinata HOM05D006420 ORTHO05D008009 1.5e-60 236.9 212 52.8
FAN05G1000 Fragaria x ananassa HOM05D006420 ORTHO05D008009 2.0e-60 236.5 233 48.9
SpUn0004_0090 Schrenkiella parvula HOM05D006420 ORTHO05D008009 5.8e-60 235.0 212 53.3
Ciclev10002177m.g Citrus clementina HOM05D006420 ORTHO05D008009 1.3e-59 233.8 208 54.3
Sed0005627 Sechium edule HOM05D006420 ORTHO05D008009 1.7e-59 233.4 212 53.3
A03p68650 Brassica napus HOM05D006420 ORTHO05D008009 2.9e-59 232.6 212 52.4
BraSC39t46193Z Brassica rapa HOM05D006420 ORTHO05D008009 2.9e-59 232.6 212 52.4
ECA232G4325 Erigeron canadensis HOM05D006420 ORTHO05D008009 3.7e-59 232.3 211 51.7
BcaC02g10755 Brassica carinata HOM05D006420 ORTHO05D008009 6.4e-59 231.5 212 52.4
C04p25420 Brassica napus HOM05D006420 ORTHO05D008009 6.4e-59 231.5 212 52.4
BolC4t24060H Brassica oleracea HOM05D006420 ORTHO05D008009 6.4e-59 231.5 212 52.4
Potri.013G021600 Populus trichocarpa HOM05D006420 ORTHO05D008009 6.4e-59 231.5 207 52.2
QL03p007116 Quercus lobata HOM05D006420 ORTHO05D008009 6.4e-59 231.5 219 52.1
Carub.0002s0818 Capsella rubella HOM05D006420 ORTHO05D008009 1.4e-58 230.3 213 51.6
CARHR287540 Cardamine hirsuta HOM05D006420 ORTHO05D008009 1.4e-58 230.3 214 50.9
AT1G55000 Arabidopsis thaliana HOM05D006420 ORTHO05D008009 1.9e-58 229.9 213 50.7
AL1G65580 Arabidopsis lyrata HOM05D006420 ORTHO05D008009 2.4e-58 229.6 214 50.9
Sabra13G0024000 Salix brachista HOM05D006420 ORTHO05D008009 2.7e-57 226.1 207 50.7
MBI04_g29616_MAGBIO Magnolia biondii HOM05D006420 ORTHO05D008009 5.0e-56 221.9 185 57.8
Haze_04190 Corylus avellana HOM05D006420 ORTHO05D008009 1.5e-52 210.3 308 38.0
AagrBONN_evm.TU.Sc2ySwM_368.542 Anthoceros agrestis HOM05D006420 ORTHO05D008009 1.1e-50 204.1 216 48.6
SMO356G0643 Selaginella moellendorffii HOM05D006420 ORTHO05D008009 9.2e-50 201.1 209 46.4
Nitab4.5_0005541g0070 Nicotiana tabacum HOM05D006420 ORTHO05D008009 1.2e-46 190.7 208 45.2
MELO3C004253.2 Cucumis melo HOM05D000208 ORTHO05D000130 3.6e-46 189.1 187 50.8
SGA_v2.0_scaffold81G26063 Striga asiatica HOM05D006420 ORTHO05D000105 2.7e-41 172.9 404 30.0
Potri.005G032100 Populus trichocarpa HOM05D006420 ORTHO05D008009 1.9e-39 166.8 149 52.3
Rhsim07G0185100 Rhododendron simsii HOM05D006420 ORTHO05D008009 1.1e-37 161.0 120 65.0
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 8.7e-32 141.4 116 54.3
MD10G1167700 Malus domestica HOM05D006420 ORTHO05D008009 1.5e-28 130.6 105 52.4
QL03p007970 Quercus lobata HOM05D006420 ORTHO05D008009 2.7e-25 119.8 114 53.5
Cre16.g667100 Chlamydomonas reinhardtii HOM05D006420 ORTHO05D008009 3.5e-25 119.4 233 30.5
QL03p007144 Quercus lobata HOM05D006420 ORTHO05D008009 2.3e-24 116.7 115 53.9
Eucgr.B01949 Eucalyptus grandis HOM05D006420 ORTHO05D008009 1.9e-23 113.6 91 51.6
Eucgr.B01859 Eucalyptus grandis HOM05D006420 ORTHO05D008009 9.6e-23 111.3 91 51.6
Eucgr.B01946 Eucalyptus grandis HOM05D006420 ORTHO05D008009 6.2e-22 108.6 88 51.1
vmacro23281 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 2.6e-20 103.2 88 52.3
Sabra05G0034600 Salix brachista HOM05D006420 ORTHO05D008009 9.9e-20 101.3 152 38.2
SEGI_28170 Sequoiadendron giganteum HOM05D006420 ORTHO05D008009 1.3e-16 90.9 83 57.8
QL03p007977 Quercus lobata HOM05D006420 ORTHO05D008009 6.3e-06 55.5 86 36.0
TPR.G8238 Trifolium pratense HOM05D002624 ORTHO05D002796 6.3e-06 55.5 62 40.3
vmacro23282 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 6.3e-06 55.5 92 40.2


User provided reference genes

Program Settings