Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0685900 Oryza sativa ssp. japonica HOM05D005988 ORTHO05D007392 2.7e-51 204.9 95 100.0
Zm00001eb290200 Zea mays HOM05D005988 ORTHO05D007392 2.2e-40 168.7 93 82.8
Zm00001eb422590 Zea mays HOM05D005988 ORTHO05D007392 4.8e-40 167.5 93 81.7
COL.COLO4_20400 Corchorus olitorius HOM05D005988 ORTHO05D007392 6.7e-34 147.1 95 71.6
PGR102G1123 Punica granatum HOM05D005988 ORTHO05D007392 6.7e-34 147.1 90 73.3
Rhsim04G0162300 Rhododendron simsii HOM05D005988 ORTHO05D007392 1.5e-33 146.0 83 77.1
AL2G25900 Arabidopsis lyrata HOM05D005988 ORTHO05D007392 2.6e-33 145.2 94 66.0
Glyma.08G104300 Glycine max HOM05D005988 ORTHO05D007392 2.6e-33 145.2 90 68.9
Lalb_Chr07g0187141 Lupinus albus HOM05D005988 ORTHO05D007392 2.6e-33 145.2 96 67.7
Glyma.05G147302 Glycine max HOM05D005988 ORTHO05D007392 4.4e-33 144.4 90 68.9
Hma1.2p1_0065F.1_g035500 Hydrangea macrophylla HOM05D005988 ORTHO05D007392 4.4e-33 144.4 94 70.2
CSS0025775 Camellia sinensis var. sinensis HOM05D005988 ORTHO05D007392 5.7e-33 144.1 94 71.3
CiPaw.05G109900 Carya illinoinensis HOM05D005988 ORTHO05D007392 5.7e-33 144.1 90 71.1
MELO3C011867.2 Cucumis melo HOM05D005988 ORTHO05D007392 1.3e-32 142.9 88 70.5
AT1G67350 Arabidopsis thaliana HOM05D005988 ORTHO05D007392 2.2e-32 142.1 94 64.9
CARHR059890 Cardamine hirsuta HOM05D005988 ORTHO05D007392 2.2e-32 142.1 94 64.9
Gohir.A03G126200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 2.8e-32 141.7 83 73.5
Gohir.D02G149200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 2.8e-32 141.7 83 73.5
Gorai.005G167100 Gossypium raimondii HOM05D005988 ORTHO05D007392 2.8e-32 141.7 83 73.5
vmacro01331 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 2.8e-32 141.7 83 73.5
vmacro05591 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 2.8e-32 141.7 83 73.5
vmacro23425 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 2.8e-32 141.7 83 73.5
Cpa.g.sc43.58 Carica papaya HOM05D005988 ORTHO05D007392 3.7e-32 141.4 89 69.7
MBI01_g01248_MAGBIO Magnolia biondii HOM05D005988 ORTHO05D007392 3.7e-32 141.4 83 74.7
Phvul.L002046 Phaseolus vulgaris HOM05D005988 ORTHO05D007392 3.7e-32 141.4 90 67.8
CsaV3_5G030290 Cucumis sativus L. HOM05D005988 ORTHO05D007392 6.3e-32 140.6 88 68.2
GSVIVG01010482001 Vitis vinifera HOM05D005988 ORTHO05D007392 6.3e-32 140.6 86 68.6
Carub.0002s1364 Capsella rubella HOM05D005988 ORTHO05D007392 8.2e-32 140.2 94 63.8
Cfa009369 Carpinus fangiana HOM05D005988 ORTHO05D007392 8.2e-32 140.2 90 68.9
Cc11_g16890 Coffea canephora HOM05D005988 ORTHO05D007392 8.2e-32 140.2 94 66.0
Haze_12418 Corylus avellana HOM05D005988 ORTHO05D007392 8.2e-32 140.2 90 68.9
ATR0582G290 Amborella trichopoda HOM05D005988 ORTHO05D007392 1.1e-31 139.8 83 73.5
ECA233G0411 Erigeron canadensis HOM05D005988 ORTHO05D007392 1.1e-31 139.8 94 67.0
Thhalv10019308m.g Eutrema salsugineum HOM05D005988 ORTHO05D007392 1.1e-31 139.8 88 67.0
Lalb_Chr13g0294321 Lupinus albus HOM05D005988 ORTHO05D007392 1.1e-31 139.8 94 63.8
Nitab4.5_0005361g0020 Nicotiana tabacum HOM05D005988 ORTHO05D007392 1.1e-31 139.8 83 74.7
Rhsim12G0099600 Rhododendron simsii HOM05D005988 ORTHO05D007392 1.1e-31 139.8 83 73.5
RcHm_v2.0_Chr4g0430261 Rosa chinensis HOM05D005988 ORTHO05D007392 1.1e-31 139.8 87 71.3
Sp5g22300 Schrenkiella parvula HOM05D005988 ORTHO05D007392 1.1e-31 139.8 88 67.0
THA.LOC109117182 Tarenaya hassleriana HOM05D005988 ORTHO05D007392 1.1e-31 139.8 94 63.8
C06p42910 Brassica napus HOM05D005988 ORTHO05D007392 1.4e-31 139.4 95 64.2
Eucgr.B03491 Eucalyptus grandis HOM05D005988 ORTHO05D007392 1.4e-31 139.4 90 68.9
Manes.13G012300 Manihot esculenta HOM05D005988 ORTHO05D007392 1.4e-31 139.4 90 68.9
Aa31sc377G10 Aethionema arabicum HOM05D005988 ORTHO05D007392 1.8e-31 139.0 94 64.9
BcaB05g24271 Brassica carinata HOM05D005988 ORTHO05D007392 1.8e-31 139.0 94 66.0
BcaB05g24277 Brassica carinata HOM05D005988 ORTHO05D007392 1.8e-31 139.0 94 66.0
BcaC08g46168 Brassica carinata HOM05D005988 ORTHO05D007392 1.8e-31 139.0 94 66.0
A07p33950 Brassica napus HOM05D005988 ORTHO05D007392 1.8e-31 139.0 94 66.0
Ca_18034_v3 Cicer arietinum L. HOM05D005988 ORTHO05D007392 1.8e-31 139.0 86 68.6
BcaC03g14837 Brassica carinata HOM05D005988 ORTHO05D007392 2.4e-31 138.7 94 66.0
A02p14180 Brassica napus HOM05D005988 ORTHO05D007392 2.4e-31 138.7 94 66.0
C02p22980 Brassica napus HOM05D005988 ORTHO05D007392 2.4e-31 138.7 94 66.0
BraA02t06481Z Brassica rapa HOM05D005988 ORTHO05D007392 2.4e-31 138.7 94 66.0
ClCG11G013680 Citrullus lanatus HOM05D005988 ORTHO05D007392 2.4e-31 138.7 83 73.5
Nitab4.5_0006506g0010 Nicotiana tabacum HOM05D005988 ORTHO05D007392 2.4e-31 138.7 83 73.5
PSO017G5437 Papaver somniferum HOM05D005988 ORTHO05D007392 2.4e-31 138.7 83 69.9
Solyc04g045620.3 Solanum lycopersicum HOM05D005988 ORTHO05D007392 3.1e-31 138.3 86 69.8
Sopen04g017580 Solanum pennellii HOM05D005988 ORTHO05D007392 3.1e-31 138.3 86 69.8
CDE06G1110 Ceratophyllum demersum HOM05D005988 ORTHO05D007392 4.1e-31 137.9 83 72.3
CAN.G875.9 Capsicum annuum HOM05D005988 ORTHO05D007392 5.3e-31 137.5 88 70.5
FvH4_4g23770 Fragaria vesca HOM05D005988 ORTHO05D007392 5.3e-31 137.5 83 71.1
FAN07G1208 Fragaria x ananassa HOM05D005988 ORTHO05D007392 5.3e-31 137.5 83 71.1
FAN12G0190 Fragaria x ananassa HOM05D005988 ORTHO05D007392 5.3e-31 137.5 83 71.1
FAN17G2984 Fragaria x ananassa HOM05D005988 ORTHO05D007392 5.3e-31 137.5 83 71.1
Prupe.1G225900 Prunus persica HOM05D005988 ORTHO05D007392 5.3e-31 137.5 93 67.7
Hund13388 Selenicereus undatus HOM05D005988 ORTHO05D007392 5.3e-31 137.5 87 69.0
Thecc.02G210500 Theobroma cacao HOM05D005988 ORTHO05D007392 5.3e-31 137.5 83 71.1
CANSAT01G3258 Cannabis sativa HOM05D005988 ORTHO05D007392 7.0e-31 137.1 85 69.4
TPR.G17077 Trifolium pratense HOM05D005988 ORTHO05D007392 7.0e-31 137.1 91 63.7
BcaB03g15204 Brassica carinata HOM05D005988 ORTHO05D007392 9.1e-31 136.7 94 63.8
DCAR_031202 Daucus carota HOM05D005988 ORTHO05D007392 9.1e-31 136.7 88 64.8
Psat0s2314g0040 Pisum sativum HOM05D005988 ORTHO05D007392 9.1e-31 136.7 94 63.8
TPR.G34164 Trifolium pratense HOM05D005988 ORTHO05D007392 1.2e-30 136.3 90 64.4
Manes.12G011400 Manihot esculenta HOM05D005988 ORTHO05D007392 1.6e-30 136.0 90 65.6
Lj4g0004056 Lotus japonicus HOM05D005988 ORTHO05D007392 2.0e-30 135.6 91 67.0
Potri.001G055400 Populus trichocarpa HOM05D005988 ORTHO05D007392 2.0e-30 135.6 90 65.6
Sabra03G0126500 Salix brachista HOM05D005988 ORTHO05D007392 2.0e-30 135.6 83 69.9
arahy.Tifrunner.gnm1.ann1.NCU5C9 Arachis hypogaea HOM05D005988 ORTHO05D007392 2.6e-30 135.2 90 65.6
Nn4g22324 Nelumbo nucifera HOM05D005988 ORTHO05D007392 2.6e-30 135.2 92 67.4
Sed0026530 Sechium edule HOM05D005988 ORTHO05D007392 2.6e-30 135.2 88 67.0
Aqoxy3G00796 Aquilegia oxysepala HOM05D005988 ORTHO05D007392 3.5e-30 134.8 83 69.9
arahy.Tifrunner.gnm1.ann1.5IUK3V Arachis hypogaea HOM05D005988 ORTHO05D007392 3.5e-30 134.8 88 65.9
Potri.003G173000 Populus trichocarpa HOM05D005988 ORTHO05D007392 3.5e-30 134.8 83 69.9
arahy.Tifrunner.gnm1.ann1.CH2TLP Arachis hypogaea HOM05D005988 ORTHO05D007392 4.5e-30 134.4 87 66.7
AUR62034347 Chenopodium quinoa HOM05D005988 ORTHO05D007392 4.5e-30 134.4 83 67.5
Sc15g0005560 Simmondsia chinensis HOM05D005988 ORTHO05D007392 4.5e-30 134.4 83 71.1
Sc15g0005760 Simmondsia chinensis HOM05D005988 ORTHO05D007392 4.5e-30 134.4 83 71.1
HanXRQChr12g0372221 Helianthus annuus HOM05D005988 ORTHO05D007392 5.9e-30 134.0 90 67.8
Sabra01G0040000 Salix brachista HOM05D005988 ORTHO05D007392 5.9e-30 134.0 90 64.4
Medtr8g080630 Medicago truncatula HOM05D005988 ORTHO05D007392 7.7e-30 133.7 94 63.8
arahy.Tifrunner.gnm1.ann1.XY4E2W Arachis hypogaea HOM05D005988 ORTHO05D007392 1.0e-29 133.3 88 64.8
EL10Ac2g02768 Beta vulgaris HOM05D005988 ORTHO05D007392 1.0e-29 133.3 87 65.5
Atru.chr11.2323 Acer truncatum HOM05D005988 ORTHO05D007392 1.3e-29 132.9 94 62.8
AUR62022358 Chenopodium quinoa HOM05D005988 ORTHO05D007392 1.3e-29 132.9 83 66.3
PGSC0003DMG400017679 Solanum tuberosum HOM05D005988 ORTHO05D007392 1.7e-29 132.5 83 71.1
Duzib251G0426 Durio zibethinus HOM05D005988 ORTHO05D007392 2.9e-29 131.7 83 72.3
Duzib251G0424 Durio zibethinus HOM05D005988 ORTHO05D007392 3.8e-29 131.3 83 71.1
MD16G1119100 Malus domestica HOM05D005988 ORTHO05D007392 3.8e-29 131.3 84 70.2
FAN22G1192 Fragaria x ananassa HOM05D005988 ORTHO05D007392 1.1e-28 129.8 79 70.9
Actinidia08072 Actinidia chinensis HOM05D005988 ORTHO05D007392 1.9e-28 129.0 83 68.7
HPP92_012485 Vanilla planifolia HOM05D005988 ORTHO05D007392 1.9e-28 129.0 93 66.7
TWI75G1041 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 4.2e-28 127.9 85 68.2
Ah.10g030080 Amaranthus hybridus HOM05D005988 ORTHO05D007392 5.5e-28 127.5 79 68.4
Nitab4.5_0000060g0090 Nicotiana tabacum HOM05D005988 ORTHO05D007392 5.5e-28 127.5 79 72.2
Peaxi162Scf00038g00014 Petunia axillaris HOM05D005988 ORTHO05D007392 7.2e-28 127.1 88 65.9
TWI18G1296 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 1.6e-27 125.9 85 65.9
unitig_62.g23652 Utricularia gibba HOM05D005988 ORTHO05D007392 8.0e-27 123.6 93 59.1
DCAR_024095 Daucus carota HOM05D005988 ORTHO05D007392 1.4e-26 122.9 84 61.9
SalBow8G0976 Salvia bowleyana HOM05D005988 ORTHO05D007392 1.4e-26 122.9 87 59.8
QL03p052764 Quercus lobata HOM05D005988 ORTHO05D007392 4.0e-26 121.3 85 63.5
Migut.E00018 Erythranthe guttata HOM05D005988 ORTHO05D007392 7.5e-25 117.1 94 58.5
Lalb_Chr23g0278041 Lupinus albus HOM05D005988 ORTHO05D007392 7.5e-25 117.1 87 62.1
SGA_v2.0_scaffold144G35838 Striga asiatica HOM05D005988 ORTHO05D007392 4.1e-23 111.3 89 53.9
MD13G1118900 Malus domestica HOM05D005988 ORTHO05D007392 5.3e-23 110.9 79 63.3
Lsat_1_v5_gn_7_95720 Lactuca sativa HOM05D005988 ORTHO05D007392 3.5e-22 108.2 68 64.7
Lalb_Chr23g0278031 Lupinus albus HOM05D005988 ORTHO05D007392 1.3e-21 106.3 83 57.8
Migut.G00897 Erythranthe guttata HOM05D005988 ORTHO05D007392 1.0e-18 96.7 70 60.0
Migut.O00848 Erythranthe guttata HOM05D005988 ORTHO05D007392 1.0e-18 96.7 70 60.0
Pp3c3_5450 Physcomitrium patens HOM05D005988 ORTHO05D007392 1.5e-17 92.8 82 50.0
CBR_g8533 Chara braunii HOM05D005988 ORTHO05D007392 1.7e-16 89.4 80 47.5
Nitab4.5_0001404g0080 Nicotiana tabacum HOM05D005988 ORTHO05D007392 3.1e-15 85.1 56 60.7
AagrBONN_evm.TU.Sc2ySwM_117.535 Anthoceros agrestis HOM05D005988 ORTHO05D007392 2.0e-14 82.4 78 47.4
Mapoly0011s0010 Marchantia polymorpha HOM05D005988 ORTHO05D007392 7.7e-14 80.5 78 47.4
SMO356G0160 Selaginella moellendorffii HOM05D005988 ORTHO05D007392 2.8e-11 72.0 80 40.0
TAR629G1917 Trochodendron aralioides HOM05D000133 ORTHO05D002928 4.0e-10 68.2 42 64.3
BcaB05g24274 Brassica carinata HOM05D005988 ORTHO05D007392 2.0e-09 65.9 86 46.5
Zm00001eb053260 Zea mays HOM05D005988 ORTHO05D007392 9.8e-09 63.5 36 77.8
Zm00001eb053240 Zea mays HOM05D005988 ORTHO05D007392 1.7e-08 62.8 36 75.0
Actinidia30649 Actinidia chinensis HOM05D005988 ORTHO05D007392 2.0e-06 55.8 41 63.4


User provided reference genes

Program Settings