Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0684300 Oryza sativa ssp. japonica HOM05D007233 ORTHO05D009043 7.4e-95 350.5 176 100.0
Zm00001eb053200 Zea mays HOM05D007233 ORTHO05D009043 1.2e-44 183.7 153 64.1
Eucgr.F03331 Eucalyptus grandis HOM05D007233 ORTHO05D009043 1.3e-30 137.1 144 50.7
Glyma.11G190700 Glycine max HOM05D007233 ORTHO05D009043 4.6e-28 128.6 142 50.0
Lj3g0012043 Lotus japonicus HOM05D007233 ORTHO05D009043 4.6e-28 128.6 140 49.3
Haze_23494 Corylus avellana HOM05D007233 ORTHO05D009043 1.7e-27 126.7 143 49.7
Potri.004G190200 Populus trichocarpa HOM05D007233 ORTHO05D009043 1.7e-27 126.7 140 50.0
Medtr4g056300 Medicago truncatula HOM05D007233 ORTHO05D009043 5.1e-27 125.2 140 49.3
Peaxi162Scf00150g00710 Petunia axillaris HOM05D007233 ORTHO05D009043 5.1e-27 125.2 141 47.5
CiPaw.14G104900 Carya illinoinensis HOM05D007233 ORTHO05D009043 6.6e-27 124.8 142 48.6
SGA_v2.0_scaffold93G28323 Striga asiatica HOM05D007233 ORTHO05D009043 6.6e-27 124.8 149 46.3
TPR.G32017 Trifolium pratense HOM05D007233 ORTHO05D009043 6.6e-27 124.8 140 48.6
ATR0665G357 Amborella trichopoda HOM05D007233 ORTHO05D009043 1.1e-26 124.0 146 47.9
PGSC0003DMG400000464 Solanum tuberosum HOM05D007233 ORTHO05D009043 1.1e-26 124.0 140 48.6
Prupe.6G116400 Prunus persica HOM05D007233 ORTHO05D009043 1.9e-26 123.2 140 48.6
RcHm_v2.0_Chr5g0055931 Rosa chinensis HOM05D007233 ORTHO05D009043 1.9e-26 123.2 140 48.6
Manes.04G010800 Manihot esculenta HOM05D007233 ORTHO05D009043 3.3e-26 122.5 140 49.3
CAN.G644.46 Capsicum annuum HOM05D007233 ORTHO05D009043 4.3e-26 122.1 140 47.1
MD11G1153700 Malus domestica HOM05D007233 ORTHO05D009043 4.3e-26 122.1 140 48.6
Sabra04G0127900 Salix brachista HOM05D007233 ORTHO05D009043 4.3e-26 122.1 140 47.9
Solyc11g066690.2 Solanum lycopersicum HOM05D007233 ORTHO05D009043 5.6e-26 121.7 140 47.1
Sopen11g026420 Solanum pennellii HOM05D007233 ORTHO05D009043 5.6e-26 121.7 140 47.1
Ca_10766_v3 Cicer arietinum L. HOM05D007233 ORTHO05D009043 7.3e-26 121.3 140 47.9
EL10Ac9g21047 Beta vulgaris HOM05D007233 ORTHO05D009043 9.6e-26 120.9 145 46.9
SalBow3G1176 Salvia bowleyana HOM05D007233 ORTHO05D009043 9.6e-26 120.9 144 45.8
Thecc.09G294400 Theobroma cacao HOM05D007233 ORTHO05D009043 9.6e-26 120.9 140 47.9
CSS0019792 Camellia sinensis var. sinensis HOM05D007233 ORTHO05D009043 1.2e-25 120.6 142 47.9
COL.COLO4_31139 Corchorus olitorius HOM05D007233 ORTHO05D009043 2.1e-25 119.8 140 47.9
MSTRG.17742 Avicennia marina HOM05D007233 ORTHO05D009043 2.8e-25 119.4 143 47.6
Phvul.011G088600 Phaseolus vulgaris HOM05D007233 ORTHO05D009043 4.7e-25 118.6 140 46.4
Hund07722 Selenicereus undatus HOM05D007233 ORTHO05D009043 4.7e-25 118.6 140 47.1
unitig_699.g19183 Utricularia gibba HOM05D007233 ORTHO05D009043 4.7e-25 118.6 141 44.7
Nitab4.5_0000442g0180 Nicotiana tabacum HOM05D007233 ORTHO05D009043 8.1e-25 117.9 140 47.9
Gohir.D13G228300 Gossypium hirsutum HOM05D007233 ORTHO05D009043 1.1e-24 117.5 140 48.6
VMungo1127G1048 Vigna mungo HOM05D007233 ORTHO05D009043 1.1e-24 117.5 140 45.7
QL01p014111 Quercus lobata HOM05D007233 ORTHO05D009043 1.4e-24 117.1 140 47.9
ClCG01G013980 Citrullus lanatus HOM05D007233 ORTHO05D009043 1.8e-24 116.7 140 44.3
Ah.01g016160 Amaranthus hybridus HOM05D007233 ORTHO05D009043 2.4e-24 116.3 149 43.0
MELO3C004843.2 Cucumis melo HOM05D007233 ORTHO05D009043 2.4e-24 116.3 140 46.4
PGR119G2223 Punica granatum HOM05D007233 ORTHO05D009043 3.1e-24 115.9 140 46.4
GSVIVG01031420001 Vitis vinifera HOM05D007233 ORTHO05D009043 4.0e-24 115.5 141 48.9
Aa31LG1G6480 Aethionema arabicum HOM05D007233 ORTHO05D009043 5.2e-24 115.2 142 43.7
Lsat_1_v5_gn_1_61521 Lactuca sativa HOM05D007233 ORTHO05D009043 5.2e-24 115.2 141 46.1
SHI05395 Sapria himalayana HOM05D007233 ORTHO05D009043 5.2e-24 115.2 140 46.4
Aqoxy1G01014 Aquilegia oxysepala HOM05D007233 ORTHO05D009043 6.9e-24 114.8 144 45.1
AUR62031769 Chenopodium quinoa HOM05D007233 ORTHO05D009043 6.9e-24 114.8 147 43.5
THA.LOC104826400 Tarenaya hassleriana HOM05D007233 ORTHO05D009043 6.9e-24 114.8 140 44.3
AL1G18800 Arabidopsis lyrata HOM05D007233 ORTHO05D009043 9.0e-24 114.4 140 44.3
BcaB07g34087 Brassica carinata HOM05D007233 ORTHO05D009043 9.0e-24 114.4 140 43.6
C05p06530 Brassica napus HOM05D007233 ORTHO05D009043 9.0e-24 114.4 140 43.6
BolC5t29413H Brassica oleracea HOM05D007233 ORTHO05D009043 9.0e-24 114.4 140 43.6
FvH4_3g30010 Fragaria vesca HOM05D007233 ORTHO05D009043 9.0e-24 114.4 140 44.3
Sed0016181 Sechium edule HOM05D007233 ORTHO05D009043 9.0e-24 114.4 140 46.4
AT1G08390 Arabidopsis thaliana HOM05D007233 ORTHO05D009043 1.2e-23 114.0 140 44.3
CANSAT78G0435 Cannabis sativa HOM05D007233 ORTHO05D009043 1.5e-23 113.6 141 46.8
Lalb_Chr03g0027851 Lupinus albus HOM05D007233 ORTHO05D009043 2.0e-23 113.2 140 45.0
FAN25G1956 Fragaria x ananassa HOM05D007233 ORTHO05D009043 2.6e-23 112.8 140 43.6
FAN21G0394 Fragaria x ananassa HOM05D007233 ORTHO05D009043 4.4e-23 112.1 140 44.3
A06p05410 Brassica napus HOM05D007233 ORTHO05D009043 5.8e-23 111.7 140 43.6
BraA06t23750Z Brassica rapa HOM05D007233 ORTHO05D009043 5.8e-23 111.7 140 43.6
Migut.N02527 Erythranthe guttata HOM05D007233 ORTHO05D009043 5.8e-23 111.7 144 47.9
Sp1g07040 Schrenkiella parvula HOM05D007233 ORTHO05D009043 7.6e-23 111.3 140 42.9
HanXRQChr11g0345871 Helianthus annuus HOM05D007233 ORTHO05D009043 1.3e-22 110.5 142 47.9
Thhalv10009077m.g Eutrema salsugineum HOM05D007233 ORTHO05D009043 1.7e-22 110.2 140 43.6
Carub.0001s0774 Capsella rubella HOM05D007233 ORTHO05D009043 4.9e-22 108.6 140 41.4
Ciclev10030019m.g Citrus clementina HOM05D007233 ORTHO05D009043 4.9e-22 108.6 140 46.4
DCAR_015489 Daucus carota HOM05D007233 ORTHO05D009043 4.9e-22 108.6 140 43.6
CARHR008260 Cardamine hirsuta HOM05D007233 ORTHO05D009043 2.4e-21 106.3 142 40.8
Cc01_g10010 Coffea canephora HOM05D007233 ORTHO05D009043 2.4e-21 106.3 147 42.2
CsaV3_1G014310 Cucumis sativus L. HOM05D007233 ORTHO05D009043 3.2e-21 105.9 141 43.3
Gohir.A13G223500 Gossypium hirsutum HOM05D007233 ORTHO05D009043 4.2e-21 105.5 140 46.4
TAR369G0714 Trochodendron aralioides HOM05D007233 ORTHO05D009043 4.2e-21 105.5 140 41.4
vmacro03232 Vaccinium macrocarpon HOM05D007233 ORTHO05D009043 4.2e-21 105.5 140 43.6
Rhsim13G0103700 Rhododendron simsii HOM05D007233 ORTHO05D009043 9.3e-21 104.4 140 42.1
ECA248G0451 Erigeron canadensis HOM05D007233 ORTHO05D009043 1.2e-20 104.0 142 41.5
Duzib170G0414 Durio zibethinus HOM05D007233 ORTHO05D009043 6.0e-20 101.7 140 44.3
MBI04_g22192_MAGBIO Magnolia biondii HOM05D007233 ORTHO05D009043 1.3e-19 100.5 106 49.1
Dinv29405 Davidia involucrata HOM05D007233 ORTHO05D009043 6.6e-19 98.2 174 36.2
PSO063G0378 Papaver somniferum HOM05D007233 ORTHO05D009043 1.1e-18 97.4 141 41.1
PSO339G4613 Papaver somniferum HOM05D007233 ORTHO05D009043 2.5e-18 96.3 141 41.1
arahy.Tifrunner.gnm1.ann1.5NF9YD Arachis hypogaea HOM05D007233 ORTHO05D009043 7.3e-18 94.7 159 37.7
Mapoly0016s0182 Marchantia polymorpha HOM05D007233 ORTHO05D009043 4.8e-17 92.0 140 40.7
Cfa010203 Carpinus fangiana HOM05D007233 ORTHO05D009043 6.2e-17 91.7 116 44.8
Cfa020420 Carpinus fangiana HOM05D007233 ORTHO05D009043 2.4e-16 89.7 97 46.4
Pp3c26_4940 Physcomitrium patens HOM05D007233 ORTHO05D009043 1.2e-15 87.4 149 36.9
Pp3c26_4950 Physcomitrium patens HOM05D007233 ORTHO05D009043 1.2e-15 87.4 149 36.9
Atru.chr3.3421 Acer truncatum HOM05D007233 ORTHO05D009043 1.5e-15 87.0 96 45.8
Haze_23479 Corylus avellana HOM05D007233 ORTHO05D009043 1.5e-15 87.0 80 51.2
Haze_23472 Corylus avellana HOM05D007233 ORTHO05D009043 3.8e-14 82.4 140 36.4
Cpa.g.sc47.40 Carica papaya HOM05D007233 ORTHO05D009043 8.4e-14 81.3 118 44.1
ClCG08G000500 Citrullus lanatus HOM05D007233 ORTHO05D009043 4.6e-12 75.5 110 40.0
Nn6g35132 Nelumbo nucifera HOM05D007233 ORTHO05D009043 7.9e-12 74.7 82 42.7
AagrBONN_evm.TU.Sc2ySwM_344.3909 Anthoceros agrestis HOM05D007233 ORTHO05D009043 1.0e-11 74.3 99 41.4
Gorai.013G259000 Gossypium raimondii HOM05D007233 ORTHO05D009043 1.0e-11 74.3 130 39.2
Haze_23491 Corylus avellana HOM05D007233 ORTHO05D009043 1.8e-11 73.6 97 42.3
Psat0s3169g0040 Pisum sativum HOM05D007233 ORTHO05D009043 1.1e-10 70.9 97 47.4
CDE02G1642 Ceratophyllum demersum HOM05D007233 ORTHO05D009043 1.9e-10 70.1 90 44.4
TWI31G0123 Tripterygium wilfordii HOM05D007233 ORTHO05D009043 4.5e-07 58.9 132 33.3


User provided reference genes

Program Settings