Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0673400 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 4.3e-29 131.0 81 100.0
Os03g0673700 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 4.0e-19 97.8 47 91.5
Zm00001eb052110 Zea mays HOM05D007587 ORTHO05D009657 1.4e-16 89.4 53 77.4
Nn5g27361 Nelumbo nucifera HOM05D007587 ORTHO05D009657 7.8e-15 83.6 46 76.1
Nn5g27360 Nelumbo nucifera HOM05D007587 ORTHO05D009657 3.9e-14 81.3 53 62.3
Hma1.2p1_2651F.1_g326150 Hydrangea macrophylla HOM05D007587 ORTHO05D009657 6.6e-14 80.5 51 60.8
TAR381G0827 Trochodendron aralioides HOM05D007587 ORTHO05D009657 1.9e-13 79.0 43 74.4
QL02p001961 Quercus lobata HOM05D007587 ORTHO05D009657 2.5e-13 78.6 43 72.1
Nitab4.5_0015343g0010 Nicotiana tabacum HOM05D007587 ORTHO05D009657 4.3e-13 77.8 52 59.6
Actinidia29637 Actinidia chinensis HOM05D007587 ORTHO05D009657 5.6e-13 77.4 43 62.8
CAN.G416.39 Capsicum annuum HOM05D007587 ORTHO05D009657 7.3e-13 77.0 46 63.0
Atru.chr13.897 Acer truncatum HOM05D007587 ORTHO05D009657 9.5e-13 76.6 43 69.8
MBI16_g05020_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 9.5e-13 76.6 48 64.6
GSVIVG01034787001 Vitis vinifera HOM05D007587 ORTHO05D009657 1.2e-12 76.3 43 67.4
Nn4g24320 Nelumbo nucifera HOM05D007587 ORTHO05D009657 1.6e-12 75.9 43 72.1
CiPaw.15G043500 Carya illinoinensis HOM05D007587 ORTHO05D009657 2.1e-12 75.5 43 67.4
CiPaw.15G043600 Carya illinoinensis HOM05D007587 ORTHO05D009657 2.1e-12 75.5 43 67.4
MBI16_g05021_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 2.1e-12 75.5 43 69.8
Nn5g27362 Nelumbo nucifera HOM05D007587 ORTHO05D009657 2.1e-12 75.5 43 62.8
Thecc.08G082100 Theobroma cacao HOM05D007587 ORTHO05D009657 2.1e-12 75.5 49 59.2
CSS0045179 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 2.8e-12 75.1 43 62.8
Migut.O00867 Erythranthe guttata HOM05D007587 ORTHO05D009657 2.8e-12 75.1 56 55.4
PGSC0003DMG400004952 Solanum tuberosum HOM05D007587 ORTHO05D009657 2.8e-12 75.1 49 59.2
Cfa017911 Carpinus fangiana HOM05D007587 ORTHO05D009657 3.6e-12 74.7 46 63.0
Manes.18G051550 Manihot esculenta HOM05D007587 ORTHO05D009657 3.6e-12 74.7 43 65.1
Migut.C00432 Erythranthe guttata HOM05D007587 ORTHO05D009657 4.7e-12 74.3 56 55.4
COL.COLO4_35374 Corchorus olitorius HOM05D007587 ORTHO05D009657 8.1e-12 73.6 43 65.1
Cc10_g07830 Coffea canephora HOM05D007587 ORTHO05D009657 1.1e-11 73.2 51 52.9
Potri.005G150300 Populus trichocarpa HOM05D007587 ORTHO05D009657 1.4e-11 72.8 43 65.1
SalBow7G1850 Salvia bowleyana HOM05D007587 ORTHO05D009657 2.3e-11 72.0 43 62.8
vmacro04609 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 2.3e-11 72.0 45 60.0
CDE04G0885 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 3.1e-11 71.6 43 65.1
Rhsim07G0216100 Rhododendron simsii HOM05D007587 ORTHO05D009657 4.0e-11 71.2 45 57.8
Rhsim07G0216200 Rhododendron simsii HOM05D007587 ORTHO05D009657 4.0e-11 71.2 45 57.8
vmacro04607 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 4.0e-11 71.2 47 55.3
vmacro04608 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 5.2e-11 70.9 45 60.0
Gohir.A01G124700 Gossypium hirsutum HOM05D007587 ORTHO05D009657 8.9e-11 70.1 43 60.5
Gohir.D01G112300 Gossypium hirsutum HOM05D007587 ORTHO05D009657 8.9e-11 70.1 43 60.5
Gorai.002G137200 Gossypium raimondii HOM05D007587 ORTHO05D009657 8.9e-11 70.1 43 60.5
Glyma.11G061100 Glycine max HOM05D007587 ORTHO05D009657 1.2e-10 69.7 45 55.6
Os12g0596101 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 1.2e-10 69.7 47 59.6
Atru.chr3.473 Acer truncatum HOM05D007587 ORTHO05D009657 2.6e-10 68.6 43 58.1
Ciclev10027038m.g Citrus clementina HOM05D007587 ORTHO05D009657 2.6e-10 68.6 47 53.2
Medtr5g018610 Medicago truncatula HOM05D007587 ORTHO05D009657 2.6e-10 68.6 55 43.6
Phvul.003G249500 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 2.6e-10 68.6 45 55.6
QL06p044263 Quercus lobata HOM05D007587 ORTHO05D009657 2.6e-10 68.6 49 49.0
Psat0s261g0120 Pisum sativum HOM05D007587 ORTHO05D009657 3.4e-10 68.2 50 46.0
Psat2g163680 Pisum sativum HOM05D007587 ORTHO05D009657 3.4e-10 68.2 50 46.0
Prupe.7G145500 Prunus persica HOM05D007587 ORTHO05D009657 3.4e-10 68.2 44 54.5
CDE06G1347 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 4.4e-10 67.8 43 60.5
Cc07_g05380 Coffea canephora HOM05D007587 ORTHO05D009657 4.4e-10 67.8 56 48.2
Dinv39924 Davidia involucrata HOM05D007587 ORTHO05D009657 4.4e-10 67.8 49 49.0
TAR381G1104 Trochodendron aralioides HOM05D007587 ORTHO05D009657 4.4e-10 67.8 47 53.2
TPR.G29850 Trifolium pratense HOM05D007587 ORTHO05D009657 5.8e-10 67.4 50 46.0
Manes.13G132300 Manihot esculenta HOM05D007587 ORTHO05D009657 7.5e-10 67.0 50 50.0
Zm00001eb135300 Zea mays HOM05D007587 ORTHO05D009657 7.5e-10 67.0 47 55.3
CBR_g28808 Chara braunii HOM05D007587 ORTHO05D009657 1.3e-09 66.2 51 47.1
Cpa.g.sc15.59 Carica papaya HOM05D007587 ORTHO05D009657 1.7e-09 65.9 56 41.1
Manes.12G097400 Manihot esculenta HOM05D007587 ORTHO05D009657 1.7e-09 65.9 50 48.0
Mapoly0026s0006 Marchantia polymorpha HOM05D007587 ORTHO05D009657 1.7e-09 65.9 43 60.5
CSS0038445 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 2.9e-09 65.1 43 51.2
ECA238G1538 Erigeron canadensis HOM05D003002 ORTHO05D002276 2.9e-09 65.1 47 48.9
Gohir.A11G188150 Gossypium hirsutum HOM05D007587 ORTHO05D009657 2.9e-09 65.1 43 53.5
Gohir.D11G194650 Gossypium hirsutum HOM05D007587 ORTHO05D009657 2.9e-09 65.1 43 53.5
Gorai.007G208100 Gossypium raimondii HOM05D007587 ORTHO05D009657 2.9e-09 65.1 43 53.5
arahy.Tifrunner.gnm1.ann1.986LRW Arachis hypogaea HOM05D007587 ORTHO05D009657 3.7e-09 64.7 49 51.0
arahy.Tifrunner.gnm1.ann1.JQT6QK Arachis hypogaea HOM05D007587 ORTHO05D009657 3.7e-09 64.7 49 51.0
COL.COLO4_22178 Corchorus olitorius HOM05D007587 ORTHO05D009657 3.7e-09 64.7 44 50.0
FAN28G1310 Fragaria x ananassa HOM05D007587 ORTHO05D009657 3.7e-09 64.7 58 43.1
AagrBONN_evm.TU.Sc2ySwM_117.169 Anthoceros agrestis HOM05D007587 ORTHO05D009657 4.9e-09 64.3 43 55.8
Migut.H00502 Erythranthe guttata HOM05D007587 ORTHO05D009657 4.9e-09 64.3 43 48.8
FAN23G2556 Fragaria x ananassa HOM05D007587 ORTHO05D009657 4.9e-09 64.3 49 46.9
SalBow1G8004 Salvia bowleyana HOM05D007587 ORTHO05D009657 4.9e-09 64.3 43 51.2
FAN26G0670 Fragaria x ananassa HOM05D007587 ORTHO05D009657 6.4e-09 63.9 49 46.9
Nitab4.5_0005594g0030 Nicotiana tabacum HOM05D007587 ORTHO05D009657 8.3e-09 63.5 43 51.2
Lsat_1_v5_gn_2_87241 Lactuca sativa HOM05D007587 ORTHO05D009657 1.1e-08 63.2 47 48.9
Sed0017528 Sechium edule HOM05D007587 ORTHO05D009657 1.1e-08 63.2 43 48.8
Lj2g0021293 Lotus japonicus HOM05D007587 ORTHO05D009657 1.9e-08 62.4 43 51.2
Solyc02g090080.1 Solanum lycopersicum HOM05D007587 ORTHO05D009657 1.9e-08 62.4 49 44.9
Lj7C15T6 Lonicera japonica HOM05D007587 ORTHO05D009657 2.4e-08 62.0 44 50.0
Thecc.01G045600 Theobroma cacao HOM05D007587 ORTHO05D009657 2.4e-08 62.0 43 48.8
Glyma.19G074100 Glycine max HOM05D007587 ORTHO05D009657 3.2e-08 61.6 43 51.2
Pp3c20_19960 Physcomitrium patens HOM05D007587 ORTHO05D009657 5.4e-08 60.8 45 53.3
ClCG02G013040 Citrullus lanatus HOM05D007587 ORTHO05D009657 1.2e-07 59.7 43 51.2
Nn5g28989 Nelumbo nucifera HOM05D007587 ORTHO05D009657 7.8e-07 57.0 32 71.9
Pp3c24_89 Physcomitrium patens HOM05D007587 ORTHO05D009657 1.7e-06 55.8 45 51.1


User provided reference genes

Program Settings