Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.2e-267 926.0 501 100.0
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 7.2e-244 847.0 503 90.9
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 1.3e-192 676.8 407 89.4
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 5.4e-183 644.8 496 71.0
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.9e-180 636.3 496 70.2
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 3.4e-177 625.5 495 67.3
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 3.4e-177 625.5 496 69.0
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 2.2e-176 622.9 496 68.8
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 8.4e-176 620.9 497 67.8
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 1.9e-175 619.8 493 69.0
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 2.4e-175 619.4 484 69.4
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 9.3e-175 617.5 502 66.5
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 1.2e-174 617.1 496 66.9
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 1.2e-174 617.1 491 67.8
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 2.1e-174 616.3 496 67.3
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 2.1e-174 616.3 487 68.2
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 7.8e-174 614.4 495 67.5
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 6.6e-173 611.3 501 66.7
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 7.3e-172 607.8 494 68.4
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 7.3e-172 607.8 494 68.2
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 9.6e-172 607.4 499 67.5
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.1e-171 606.3 516 65.3
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 6.2e-171 604.7 501 67.5
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 1.1e-170 604.0 494 67.2
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 2.4e-170 602.8 496 67.1
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 2.4e-170 602.8 494 67.8
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 4.0e-170 602.1 496 66.5
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 6.9e-170 601.3 526 64.1
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 6.9e-170 601.3 501 67.3
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 1.5e-169 600.1 494 66.2
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 1.5e-169 600.1 501 66.3
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 2.0e-169 599.7 494 66.4
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 2.0e-169 599.7 497 68.0
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 3.4e-169 599.0 495 66.3
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 3.4e-169 599.0 495 66.7
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 7.6e-169 597.8 495 66.1
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 7.6e-169 597.8 501 67.1
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 1.7e-168 596.7 494 66.2
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 4.9e-168 595.1 501 64.9
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 8.4e-168 594.3 486 66.7
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 2.4e-167 592.8 496 66.5
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 7.1e-167 591.3 495 65.3
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 2.1e-166 589.7 500 64.2
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 3.5e-166 589.0 509 65.2
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 3.5e-166 589.0 470 68.7
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 4.6e-166 588.6 505 64.8
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 7.9e-166 587.8 493 65.9
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 1.8e-165 586.6 483 67.5
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 3.0e-165 585.9 493 65.5
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 6.7e-165 584.7 493 66.1
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 6.7e-165 584.7 487 65.5
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 6.7e-165 584.7 495 65.5
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 1.5e-164 583.6 495 66.5
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 2.5e-164 582.8 486 65.4
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 7.4e-164 581.3 498 65.5
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 7.4e-164 581.3 494 65.2
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 1.6e-163 580.1 512 63.3
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 2.1e-163 579.7 492 64.6
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.8e-162 576.6 498 64.9
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 2.4e-162 576.2 495 65.3
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 1.2e-161 573.9 488 65.2
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 1.2e-161 573.9 485 64.3
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 5.8e-161 571.6 487 65.3
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 9.9e-161 570.9 508 64.2
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 9.9e-161 570.9 493 64.7
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 1.7e-160 570.1 496 64.1
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 2.2e-160 569.7 499 64.3
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 6.4e-160 568.2 497 63.6
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 8.4e-160 567.8 494 64.2
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 1.9e-159 566.6 488 66.0
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 3.2e-159 565.8 493 64.3
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 9.3e-159 564.3 493 64.1
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 2.1e-158 563.1 491 64.0
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 4.6e-158 562.0 489 64.4
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 6.0e-158 561.6 493 63.7
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 2.3e-157 559.7 509 63.7
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 3.9e-157 558.9 508 62.4
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 3.9e-157 558.9 504 62.3
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 1.9e-156 556.6 523 60.8
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 1.9e-156 556.6 499 62.5
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 3.3e-156 555.8 493 64.1
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 4.3e-156 555.4 494 63.6
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 5.6e-156 555.1 500 62.2
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 6.2e-155 551.6 512 62.1
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 8.2e-155 551.2 423 71.4
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 1.8e-154 550.1 490 64.3
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 6.9e-154 548.1 502 61.6
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 6.9e-154 548.1 496 63.7
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 1.2e-153 547.4 490 63.3
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.2e-153 547.4 474 65.4
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 2.6e-153 546.2 506 61.9
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 1.0e-152 544.3 506 61.7
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 3.8e-152 542.3 500 62.4
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 8.4e-152 541.2 508 61.0
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 9.3e-151 537.7 487 62.6
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 1.6e-150 537.0 505 60.8
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 1.6e-150 537.0 484 63.8
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 2.1e-150 536.6 493 61.1
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 3.5e-150 535.8 494 61.3
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 7.9e-150 534.6 490 62.2
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 1.8e-149 533.5 477 62.9
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 2.4e-146 523.1 436 65.6
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.2e-145 520.8 520 58.8
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 6.9e-138 495.0 381 70.1
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 3.8e-136 489.2 487 58.5
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 2.0e-132 476.9 481 57.4
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 6.3e-131 471.9 359 71.3
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 4.1e-130 469.2 439 60.8
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 3.2e-127 459.5 530 53.8
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 9.7e-124 448.0 499 53.7
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 2.7e-118 429.9 459 56.9
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 8.0e-118 428.3 476 56.3
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 3.8e-112 409.5 446 51.6
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 2.7e-110 403.3 506 49.8
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 3.7e-107 392.9 394 59.4
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 4.5e-97 359.4 369 58.3
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 1.6e-94 350.9 493 49.1
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 6.2e-86 322.4 207 77.8
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 1.1e-85 321.6 385 53.2
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 1.1e-85 321.6 385 53.2
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 2.0e-84 317.4 338 54.7
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 3.0e-80 303.5 412 45.6
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 3.0e-80 303.5 325 52.3
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 9.5e-79 298.5 427 45.2
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 4.1e-74 283.1 251 64.5
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.7e-73 280.4 220 68.6
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.1e-71 275.0 222 68.5
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 6.2e-70 269.2 439 42.1
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 6.0e-57 226.1 368 41.0
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.3e-56 224.2 205 62.0
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 2.8e-54 217.2 276 49.6
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 2.1e-49 201.1 433 34.9
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.1e-47 195.3 404 35.6
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 9.6e-39 165.6 165 57.6
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 4.8e-38 163.3 106 71.7
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.1e-37 162.2 96 80.2
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 3.8e-35 153.7 92 79.3
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 7.9e-33 146.0 133 60.9
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 2.3e-32 144.4 87 82.8
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 7.2e-26 122.9 291 36.1
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 6.9e-21 106.3 62 95.2
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 6.9e-21 106.3 62 95.2
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 6.5e-19 99.8 62 90.3
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 1.4e-18 98.6 119 50.4
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.2e-17 95.5 130 46.9
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 2.0e-15 88.2 185 35.1
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.6e-15 87.8 97 47.4
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 5.9e-12 76.6 71 66.2
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 3.0e-08 64.3 58 63.8
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 7.4e-07 59.7 49 57.1
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 2.8e-06 57.8 50 70.0


User provided reference genes

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