Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0665800 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D008989 1.2e-92 343.6 233 100.0
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 6.0e-60 235.0 136 87.5
Carub.0005s2299 Capsella rubella HOM05D002744 ORTHO05D008989 2.8e-57 226.1 162 69.8
Ciclev10032836m.g Citrus clementina HOM05D002744 ORTHO05D008989 4.8e-57 225.3 163 66.9
GSVIVG01032723001 Vitis vinifera HOM05D002744 ORTHO05D008989 1.1e-56 224.2 164 67.7
PGR142G3983 Punica granatum HOM05D002744 ORTHO05D008989 4.0e-56 222.2 163 68.1
Thhalv10006252m.g Eutrema salsugineum HOM05D002744 ORTHO05D008989 1.5e-55 220.3 154 71.4
BcaB08g34630 Brassica carinata HOM05D002744 ORTHO05D008989 2.6e-55 219.5 167 65.9
Sp5g06290 Schrenkiella parvula HOM05D002744 ORTHO05D008989 2.6e-55 219.5 162 66.7
Dinv21809 Davidia involucrata HOM05D002744 ORTHO05D008989 4.5e-55 218.8 159 67.3
Hma1.2p1_1240F.1_g269640 Hydrangea macrophylla HOM05D002744 ORTHO05D008989 4.5e-55 218.8 154 69.5
CANSAT56G2966 Cannabis sativa HOM05D002744 ORTHO05D008989 5.8e-55 218.4 163 65.6
Peaxi162Scf00284g00123 Petunia axillaris HOM05D002744 ORTHO05D008989 7.6e-55 218.0 154 68.8
Atru.BG.256.p Acer truncatum HOM05D002744 ORTHO05D008989 9.9e-55 217.6 154 70.1
CARHR166360 Cardamine hirsuta HOM05D002744 ORTHO05D008989 9.9e-55 217.6 162 67.9
AL5G37530 Arabidopsis lyrata HOM05D002744 ORTHO05D008989 1.3e-54 217.2 162 67.9
CsaV3_5G010720 Cucumis sativus L. HOM05D002744 ORTHO05D008989 1.3e-54 217.2 159 64.8
Eucgr.G03110 Eucalyptus grandis HOM05D002744 ORTHO05D008989 1.3e-54 217.2 166 65.7
Rhsim09G0182800 Rhododendron simsii HOM05D002744 ORTHO05D008989 3.8e-54 215.7 155 69.0
Sed0024728 Sechium edule HOM05D002744 ORTHO05D008989 3.8e-54 215.7 163 64.4
MD07G1229300 Malus domestica HOM05D002744 ORTHO05D008989 8.4e-54 214.5 164 65.2
Glyma.11G234700 Glycine max HOM05D002744 ORTHO05D008989 1.1e-53 214.2 164 64.0
Glyma.18G022300 Glycine max HOM05D002744 ORTHO05D008989 1.1e-53 214.2 170 63.5
Lju41C22T0 Lonicera japonica HOM05D002744 ORTHO05D008989 1.9e-53 213.4 161 68.3
Nitab4.5_0000263g0100 Nicotiana tabacum HOM05D002744 ORTHO05D008989 1.9e-53 213.4 154 67.5
Nn2g11068 Nelumbo nucifera HOM05D002744 ORTHO05D008989 3.2e-53 212.6 163 63.8
Nitab4.5_0000928g0050 Nicotiana tabacum HOM05D002744 ORTHO05D008989 3.2e-53 212.6 153 68.0
THA.LOC104824346 Tarenaya hassleriana HOM05D002744 ORTHO05D008989 3.2e-53 212.6 166 64.5
AT3G56210 Arabidopsis thaliana HOM05D002744 ORTHO05D008989 4.2e-53 212.2 164 67.7
Lj8C58T1 Lonicera japonica HOM05D002744 ORTHO05D008989 5.5e-53 211.8 161 67.7
Actinidia00986 Actinidia chinensis HOM05D002744 ORTHO05D008989 7.1e-53 211.5 155 66.5
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 7.1e-53 211.5 169 60.4
Gohir.D04G071200 Gossypium hirsutum HOM05D002744 ORTHO05D008989 9.3e-53 211.1 164 61.6
CiPaw.02G197300 Carya illinoinensis HOM05D002744 ORTHO05D008989 1.2e-52 210.7 164 62.2
MSTRG.12212 Avicennia marina HOM05D002744 ORTHO05D008989 1.6e-52 210.3 159 62.9
Thecc.10G007100 Theobroma cacao HOM05D002744 ORTHO05D008989 1.6e-52 210.3 164 62.2
Cc02_g05720 Coffea canephora HOM05D002744 ORTHO05D008989 2.1e-52 209.9 163 63.2
RcHm_v2.0_Chr1g0371481 Rosa chinensis HOM05D002744 ORTHO05D008989 2.7e-52 209.5 164 61.0
HPP92_013966 Vanilla planifolia HOM05D002744 ORTHO05D008989 2.7e-52 209.5 163 66.9
Duzib114G0765 Durio zibethinus HOM05D002744 ORTHO05D008989 4.6e-52 208.8 154 67.5
Migut.A01076 Erythranthe guttata HOM05D002744 ORTHO05D008989 6.0e-52 208.4 154 64.9
A09p49190 Brassica napus HOM05D002744 ORTHO05D008989 7.9e-52 208.0 168 63.1
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 7.9e-52 208.0 163 61.3
MD01G1161400 Malus domestica HOM05D002744 ORTHO05D008989 7.9e-52 208.0 161 65.2
BraA09t40372Z Brassica rapa HOM05D002744 ORTHO05D008989 1.8e-51 206.8 176 61.4
FvH4_7g25501 Fragaria vesca HOM05D002744 ORTHO05D008989 1.8e-51 206.8 163 60.7
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.8e-51 206.8 163 60.7
Gohir.A05G332500 Gossypium hirsutum HOM05D002744 ORTHO05D008989 1.8e-51 206.8 154 64.9
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 2.3e-51 206.5 163 62.0
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 3.0e-51 206.1 163 60.7
arahy.Tifrunner.gnm1.ann1.HIE7A8 Arachis hypogaea HOM05D002744 ORTHO05D008989 3.9e-51 205.7 164 60.4
PSO017G6389 Papaver somniferum HOM05D002744 ORTHO05D008989 3.9e-51 205.7 163 63.2
Phvul.001G248100 Phaseolus vulgaris HOM05D002744 ORTHO05D008989 3.9e-51 205.7 164 60.4
Manes.10G008400 Manihot esculenta HOM05D002744 ORTHO05D008989 5.1e-51 205.3 155 66.5
Potri.008G075600 Populus trichocarpa HOM05D002744 ORTHO05D008989 5.1e-51 205.3 158 64.6
QL08p064284 Quercus lobata HOM05D002744 ORTHO05D008989 5.1e-51 205.3 164 60.4
Sabra08G0056200 Salix brachista HOM05D002744 ORTHO05D008989 8.7e-51 204.5 158 63.9
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 1.1e-50 204.1 154 64.9
arahy.Tifrunner.gnm1.ann1.N80L0Z Arachis hypogaea HOM05D002744 ORTHO05D008989 1.5e-50 203.8 163 60.1
DCAR_011891 Daucus carota HOM05D002744 ORTHO05D008989 1.5e-50 203.8 150 67.3
PSO170G0776 Papaver somniferum HOM05D002744 ORTHO05D008989 1.5e-50 203.8 163 62.6
arahy.Tifrunner.gnm1.ann1.B5C26Y Arachis hypogaea HOM05D002744 ORTHO05D008989 1.9e-50 203.4 163 60.1
Lj6g0011522 Lotus japonicus HOM05D002744 ORTHO05D008989 3.3e-50 202.6 166 62.7
Sopen02g021690 Solanum pennellii HOM05D002744 ORTHO05D008989 4.3e-50 202.2 154 63.6
TWI38G2197 Tripterygium wilfordii HOM05D002744 ORTHO05D008989 4.3e-50 202.2 155 65.2
vmacro09984 Vaccinium macrocarpon HOM05D002744 ORTHO05D008989 4.3e-50 202.2 189 57.1
EL10Ac2g04293 Beta vulgaris HOM05D002744 ORTHO05D008989 5.6e-50 201.8 155 61.9
HanXRQChr17g0560791 Helianthus annuus HOM05D002744 ORTHO05D008989 9.6e-50 201.1 154 61.7
AUR62022976 Chenopodium quinoa HOM05D002744 ORTHO05D008989 2.1e-49 199.9 154 63.0
Haze_17321 Corylus avellana HOM05D002744 ORTHO05D008989 2.1e-49 199.9 164 59.8
AUR62012334 Chenopodium quinoa HOM05D002744 ORTHO05D008989 3.7e-49 199.1 153 62.7
Gorai.012G080100 Gossypium raimondii HOM05D002744 ORTHO05D008989 4.8e-49 198.7 164 61.0
VMungo1383G3724 Vigna mungo HOM05D002744 ORTHO05D008989 4.8e-49 198.7 154 64.3
SalBow3G4547 Salvia bowleyana HOM05D002744 ORTHO05D008989 1.1e-48 197.6 154 59.1
Ca_15179_v3 Cicer arietinum L. HOM05D002744 ORTHO05D008989 4.0e-48 195.7 163 58.9
Lsat_1_v5_gn_8_13401 Lactuca sativa HOM05D002744 ORTHO05D008989 5.3e-48 195.3 150 63.3
TPR.G28641 Trifolium pratense HOM05D002744 ORTHO05D008989 2.0e-47 193.4 164 57.9
Hund13513 Selenicereus undatus HOM05D002744 ORTHO05D008989 3.4e-47 192.6 159 57.2
Medtr3g072120 Medicago truncatula HOM05D002744 ORTHO05D008989 1.0e-46 191.0 165 58.2
Lalb_Chr08g0231351 Lupinus albus HOM05D002744 ORTHO05D008989 4.9e-46 188.7 164 56.7
Oeu026180.1 Olea europaea HOM05D002744 ORTHO05D008989 4.9e-46 188.7 139 66.9
ECA233G4001 Erigeron canadensis HOM05D002744 ORTHO05D008989 6.5e-46 188.3 154 59.7
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.6e-44 183.7 186 52.2
Hma1.2p1_1240F.1_g269630 Hydrangea macrophylla HOM05D002744 ORTHO05D008989 1.0e-43 181.0 116 75.0
unitig_32.g11706 Utricularia gibba HOM05D002744 ORTHO05D008989 1.0e-43 181.0 159 54.7
unitig_33.g30211 Utricularia gibba HOM05D002744 ORTHO05D008989 1.0e-43 181.0 159 54.7
SGA_v2.0_scaffold36G14267 Striga asiatica HOM05D002744 ORTHO05D008989 1.3e-43 180.6 154 59.1
BcaB01g00016 Brassica carinata HOM05D002744 ORTHO05D008989 2.3e-43 179.9 152 63.2
TAR369G0133 Trochodendron aralioides HOM05D000826 ORTHO05D001831 5.1e-43 178.7 123 69.1
BcaC07g39936 Brassica carinata HOM05D002744 ORTHO05D008989 1.9e-42 176.8 126 69.0
C08p31530 Brassica napus HOM05D002744 ORTHO05D008989 1.9e-42 176.8 126 69.0
Lj1A963T49 Lonicera japonica HOM05D002744 ORTHO05D008989 1.9e-42 176.8 111 75.7
ATR0681G046 Amborella trichopoda HOM05D000826 ORTHO05D008989 8.2e-41 171.4 151 58.3
Prupe.2G259500 Prunus persica HOM05D002744 ORTHO05D008989 1.4e-40 170.6 121 71.1
EL10Ac2g04295 Beta vulgaris HOM05D002744 ORTHO05D008989 3.4e-39 166.0 112 68.8
BcaB01g00017 Brassica carinata HOM05D002744 ORTHO05D008989 2.9e-38 162.9 167 56.9
Aa31LG10G11120 Aethionema arabicum HOM05D002744 ORTHO05D008989 3.8e-38 162.5 119 70.6
CDE02G4284 Ceratophyllum demersum HOM05D002744 ORTHO05D008989 3.8e-38 162.5 108 67.6
ClCG07G004800 Citrullus lanatus HOM05D002744 ORTHO05D008989 5.0e-38 162.2 120 65.8
BolC8t50775H Brassica oleracea HOM05D002744 ORTHO05D008989 1.6e-36 157.1 167 49.7
SEGI_09795 Sequoiadendron giganteum HOM05D002744 ORTHO05D008989 4.6e-36 155.6 156 51.3
PGSC0003DMG400010239 Solanum tuberosum HOM05D002744 ORTHO05D008989 2.3e-35 153.3 118 66.9
Solyc02g076790.4 Solanum lycopersicum HOM05D002744 ORTHO05D008989 3.0e-35 152.9 118 66.1
TAR623G0678 Trochodendron aralioides HOM05D002744 ORTHO05D008989 8.2e-33 144.8 116 66.4
MELO3C020107.2 Cucumis melo HOM05D002744 ORTHO05D008989 4.5e-31 139.0 159 45.3
SEGI_38813 Sequoiadendron giganteum HOM05D002744 ORTHO05D008989 6.5e-30 135.2 107 59.8
Gohir.A10G240750 Gossypium hirsutum HOM05D002744 ORTHO05D008989 2.7e-28 129.8 114 58.8
Mapoly0001s0439 Marchantia polymorpha HOM05D002744 ORTHO05D008989 1.1e-26 124.4 160 40.6
Psat5g130160 Pisum sativum HOM05D002744 ORTHO05D008989 4.1e-24 115.9 81 65.4
Hma1.2p1_0322F.1_g124790 Hydrangea macrophylla HOM05D002744 ORTHO05D008989 1.2e-23 114.4 150 44.0
CDE01G0559 Ceratophyllum demersum HOM05D002744 ORTHO05D008989 1.3e-22 110.9 138 45.7
Sc10g0002800 Simmondsia chinensis HOM05D002744 ORTHO05D008989 4.7e-20 102.4 114 48.2
Pp3c8_1670 Physcomitrium patens HOM05D002744 ORTHO05D008989 2.0e-15 87.0 96 43.8
SMO147G0318 Selaginella moellendorffii HOM05D002744 ORTHO05D008989 8.8e-11 71.6 139 31.7
C06p23580 Brassica napus HOM05D002744 ORTHO05D008989 4.1e-08 62.8 39 66.7
Psat5g125520 Pisum sativum HOM05D002744 ORTHO05D008989 3.5e-07 59.7 49 51.0


User provided reference genes

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