Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 0.0e+00 1274.2 665 100.0
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 6.0e-222 774.6 449 92.0
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 1.3e-205 720.3 662 62.4
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 1.7e-192 676.8 669 58.9
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 1.7e-192 676.8 669 58.9
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 5.0e-192 675.2 670 60.0
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 6.5e-192 674.9 668 58.4
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 1.1e-191 674.1 679 58.2
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 2.1e-190 669.8 673 57.9
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 7.9e-190 667.9 688 58.0
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 1.0e-189 667.5 672 58.6
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 1.0e-189 667.5 671 58.7
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 1.5e-188 663.7 666 58.4
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 3.3e-188 662.5 674 58.5
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 3.3e-188 662.5 668 58.8
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 7.4e-188 661.4 674 56.7
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 1.3e-187 660.6 670 58.2
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 1.3e-187 660.6 679 58.5
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 2.8e-187 659.4 670 58.1
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 3.7e-187 659.1 665 57.6
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 1.1e-186 657.5 675 58.4
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 1.4e-186 657.1 672 57.7
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 1.8e-186 656.8 670 58.1
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 2.4e-186 656.4 681 58.3
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 7.0e-186 654.8 674 57.7
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 7.0e-186 654.8 692 55.9
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 2.9e-184 649.4 674 57.3
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 6.5e-184 648.3 674 57.7
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 2.5e-183 646.4 680 56.6
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 2.5e-183 646.4 675 57.2
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 3.2e-183 646.0 616 61.4
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 7.2e-183 644.8 675 56.3
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 1.2e-182 644.0 674 56.8
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 2.7e-182 642.9 663 57.3
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 3.6e-182 642.5 689 54.9
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 4.7e-182 642.1 680 56.8
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 8.8e-181 637.9 673 56.0
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.1e-180 637.5 727 53.6
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 1.1e-180 637.5 701 52.6
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.5e-180 637.1 647 57.8
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 7.4e-180 634.8 683 55.8
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 1.7e-179 633.6 650 57.8
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 3.7e-179 632.5 680 56.8
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 6.3e-179 631.7 678 56.6
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 1.4e-178 630.6 667 56.8
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 3.1e-178 629.4 677 57.3
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 4.1e-178 629.0 671 55.9
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 1.7e-176 623.6 669 56.4
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 5.0e-176 622.1 684 55.0
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 5.5e-175 618.6 662 55.9
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 9.4e-175 617.8 667 55.9
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.2e-174 617.5 679 53.6
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 2.1e-174 616.7 562 63.0
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.7e-174 616.3 676 55.6
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 8.0e-174 614.8 638 57.5
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 8.0e-174 614.8 687 54.3
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 2.3e-173 613.2 518 68.0
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 2.3e-173 613.2 622 58.7
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 4.0e-173 612.5 675 56.1
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 2.0e-172 610.1 795 50.1
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 9.7e-172 607.8 565 62.3
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 4.1e-170 602.4 649 55.5
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 4.2e-167 592.4 642 54.4
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 9.4e-167 591.3 641 55.4
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 8.8e-165 584.7 681 54.2
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 2.6e-164 583.2 639 55.4
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 4.4e-164 582.4 663 54.3
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 1.7e-163 580.5 671 54.2
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 1.7e-163 580.5 682 54.5
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 3.7e-163 579.3 674 55.0
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 3.7e-163 579.3 559 62.4
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 1.1e-162 577.8 622 56.4
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 5.4e-162 575.5 661 54.0
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.2e-161 574.3 643 55.1
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 3.5e-161 572.8 679 53.6
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 1.3e-160 570.9 653 53.0
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 1.7e-160 570.5 675 53.2
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 1.7e-160 570.5 675 53.2
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 3.8e-160 569.3 667 54.0
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 2.8e-158 563.1 685 49.1
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 1.4e-157 560.8 676 53.0
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 2.3e-157 560.1 672 53.3
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 3.0e-157 559.7 680 52.9
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 3.0e-157 559.7 680 52.9
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 5.2e-157 558.9 661 53.4
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 5.2e-157 558.9 661 53.4
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 1.2e-156 557.8 676 52.5
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.0e-156 557.0 562 58.7
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 2.6e-156 556.6 546 59.3
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 3.4e-156 556.2 671 49.5
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 4.9e-155 552.4 666 53.8
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 4.9e-155 552.4 496 63.1
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 2.7e-153 546.6 736 46.3
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 1.5e-151 540.8 646 50.9
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 1.2e-145 521.2 707 48.5
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 2.3e-144 516.9 438 65.8
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 6.6e-144 515.4 634 53.2
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 6.8e-141 505.4 691 48.8
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 1.0e-136 491.5 614 52.6
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 3.0e-136 490.0 653 50.4
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 3.9e-136 489.6 674 44.8
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 2.1e-134 483.8 572 51.0
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 5.2e-133 479.2 683 44.2
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.6e-129 467.6 621 46.1
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 1.5e-127 461.1 557 49.7
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 1.8e-125 454.1 475 54.5
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 1.1e-122 444.9 679 43.6
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.7e-121 440.3 404 62.6
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 3.5e-121 439.9 678 45.3
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 5.3e-117 426.0 714 41.0
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 3.2e-114 416.8 616 44.2
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 2.4e-106 390.6 510 49.6
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 6.2e-102 375.9 671 39.9
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 1.1e-101 375.2 557 45.8
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 1.0e-96 358.6 608 39.3
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 2.1e-81 307.8 311 65.3
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.0e-75 288.9 292 56.2
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 5.7e-71 273.1 275 65.8
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 4.2e-66 256.9 180 82.8
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.1e-65 254.6 335 43.6
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 3.9e-64 250.4 292 55.1
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.5e-58 231.9 290 52.4
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 4.4e-55 220.3 185 75.7
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 9.8e-55 219.2 191 77.0
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.4e-53 214.5 283 42.4
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 8.8e-48 196.1 210 52.9
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 3.6e-41 174.1 273 40.3
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 1.4e-40 172.2 102 89.2
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 1.2e-36 159.1 130 66.9
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 4.6e-36 157.1 219 53.4
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 7.8e-36 156.4 207 44.0
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 5.0e-35 153.7 320 33.8
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 6.2e-33 146.7 273 40.7
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 2.2e-30 138.3 83 75.9
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 1.2e-23 115.9 168 39.3
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 1.3e-22 112.5 310 29.7
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.7e-22 112.1 89 73.0
TAR625G0944 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.6e-17 95.5 116 41.4
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 1.8e-16 92.0 59 71.2
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 3.1e-16 91.3 53 77.4
SEGI_36483 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 7.1e-13 80.1 58 69.0
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 1.4e-08 65.9 55 60.0
SHI16685 Sapria himalayana HOM05D004640 ORTHO05D005489 6.8e-08 63.5 171 28.1
TAR625G0012 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.5e-07 62.4 120 41.7
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 5.8e-07 60.5 32 93.8
Haze_01802 Corylus avellana HOM05D004640 ORTHO05D005489 4.9e-06 57.4 74 39.2
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 6.4e-06 57.0 36 80.6
SEGI_15466 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 6.4e-06 57.0 156 28.8
SHI16674 Sapria himalayana HOM05D004640 ORTHO05D005489 8.4e-06 56.6 35 62.9


User provided reference genes

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