Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0659300 Oryza sativa ssp. japonica HOM05D006838 ORTHO05D008915 3.7e-76 288.1 142 100.0
Zm00001eb052640 Zea mays HOM05D006838 ORTHO05D008915 4.2e-64 248.1 140 84.3
EL10Ac3g06416 Beta vulgaris HOM05D006838 ORTHO05D008915 2.2e-36 156.0 136 55.1
AUR62038604 Chenopodium quinoa HOM05D006838 ORTHO05D008915 4.1e-35 151.8 135 52.6
Sc13g0004470 Simmondsia chinensis HOM05D006838 ORTHO05D008915 5.3e-35 151.4 134 54.5
Hund12124 Selenicereus undatus HOM05D006838 ORTHO05D008915 9.1e-35 150.6 133 55.6
AUR62033621 Chenopodium quinoa HOM05D006838 ORTHO05D008915 1.2e-34 150.2 135 51.1
Ah.13g072770 Amaranthus hybridus HOM05D006838 ORTHO05D008915 1.6e-34 149.8 136 52.2
arahy.Tifrunner.gnm1.ann1.08EL86 Arachis hypogaea HOM05D006838 ORTHO05D008915 2.6e-34 149.1 135 51.9
arahy.Tifrunner.gnm1.ann1.00V3DL Arachis hypogaea HOM05D006838 ORTHO05D008915 5.9e-34 147.9 135 51.1
TAR365G1174 Trochodendron aralioides HOM05D006838 ORTHO05D008915 1.9e-32 142.9 131 55.0
CAN.G1094.4 Capsicum annuum HOM05D006838 ORTHO05D008915 3.2e-32 142.1 132 53.0
Medtr5g006360 Medicago truncatula HOM05D006838 ORTHO05D008915 4.2e-32 141.7 138 50.7
PGR004G0798 Punica granatum HOM05D006838 ORTHO05D008915 4.2e-32 141.7 134 50.7
Dinv13999 Davidia involucrata HOM05D006838 ORTHO05D008915 5.5e-32 141.4 133 53.4
Gohir.D01G021700 Gossypium hirsutum HOM05D006838 ORTHO05D008915 5.5e-32 141.4 132 49.2
Psat4g210280 Pisum sativum HOM05D006838 ORTHO05D008915 7.2e-32 141.0 135 50.4
FAN12G2261 Fragaria x ananassa HOM05D006838 ORTHO05D008915 9.4e-32 140.6 133 49.6
HanXRQChr10g0288871 Helianthus annuus HOM05D006838 ORTHO05D008915 9.4e-32 140.6 134 54.5
Aa31LG5G4930 Aethionema arabicum HOM05D006838 ORTHO05D008915 1.2e-31 140.2 132 49.2
Gorai.002G024200 Gossypium raimondii HOM05D006838 ORTHO05D008915 1.2e-31 140.2 132 48.5
TPR.G37905 Trifolium pratense HOM05D006838 ORTHO05D008915 1.6e-31 139.8 135 50.4
Atru.chr4.2454 Acer truncatum HOM05D006838 ORTHO05D008915 2.1e-31 139.4 133 49.6
Cpa.g.sc58.98 Carica papaya HOM05D006838 ORTHO05D008915 2.1e-31 139.4 134 49.3
Nn4g26336 Nelumbo nucifera HOM05D006838 ORTHO05D008915 2.7e-31 139.0 132 50.8
Nitab4.5_0000316g0010 Nicotiana tabacum HOM05D006838 ORTHO05D008915 3.6e-31 138.7 132 53.0
CARHR125890 Cardamine hirsuta HOM05D006838 ORTHO05D008915 4.7e-31 138.3 133 48.9
MBI12_g03925_MAGBIO Magnolia biondii HOM05D006838 ORTHO05D008915 4.7e-31 138.3 132 50.8
MD13G1194100 Malus domestica HOM05D006838 ORTHO05D008915 4.7e-31 138.3 137 49.6
PSO832G4526 Papaver somniferum HOM05D006838 ORTHO05D008915 4.7e-31 138.3 133 51.1
Thhalv10017983m.g Eutrema salsugineum HOM05D006838 ORTHO05D008915 6.1e-31 137.9 137 49.6
AT2G32090 Arabidopsis thaliana HOM05D006838 ORTHO05D008915 8.0e-31 137.5 132 50.0
Duzib052G0907 Durio zibethinus HOM05D006838 ORTHO05D008915 8.0e-31 137.5 132 50.8
Eucgr.H03458 Eucalyptus grandis HOM05D006838 ORTHO05D008915 1.4e-30 136.7 133 51.1
Aqoxy5G00461 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 1.8e-30 136.3 130 52.3
PSO210G6947 Papaver somniferum HOM05D006838 ORTHO05D008915 1.8e-30 136.3 135 49.6
Sp4g14500 Schrenkiella parvula HOM05D006838 ORTHO05D008915 1.8e-30 136.3 137 48.9
TWI73G0194 Tripterygium wilfordii HOM05D006838 ORTHO05D008915 1.8e-30 136.3 133 48.9
BcaB02g10450 Brassica carinata HOM05D006838 ORTHO05D008915 2.3e-30 136.0 139 51.1
C04p17530 Brassica napus HOM05D006838 ORTHO05D008915 2.3e-30 136.0 137 50.4
Eucgr.H03460 Eucalyptus grandis HOM05D006838 ORTHO05D008915 2.3e-30 136.0 133 50.4
LjContig00408g0014048 Lotus japonicus HOM05D006838 ORTHO05D008915 2.3e-30 136.0 135 51.9
BolC4t23300H Brassica oleracea HOM05D006838 ORTHO05D008915 3.0e-30 135.6 137 50.4
QL06p002133 Quercus lobata HOM05D006838 ORTHO05D008915 4.0e-30 135.2 133 47.4
BraA05t20279Z Brassica rapa HOM05D006838 ORTHO05D008915 5.2e-30 134.8 137 49.6
Nitab4.5_0001342g0050 Nicotiana tabacum HOM05D006838 ORTHO05D008915 5.2e-30 134.8 132 51.5
RcHm_v2.0_Chr4g0416051 Rosa chinensis HOM05D006838 ORTHO05D008915 5.2e-30 134.8 133 47.4
Thecc.04G232900 Theobroma cacao HOM05D006838 ORTHO05D008915 5.2e-30 134.8 132 48.5
A05p13410 Brassica napus HOM05D006838 ORTHO05D008915 6.7e-30 134.4 137 49.6
Cc03_g03870 Coffea canephora HOM05D006838 ORTHO05D008915 6.7e-30 134.4 132 50.8
ECA246G0107 Erigeron canadensis HOM05D006838 ORTHO05D008915 6.7e-30 134.4 133 51.1
Solyc09g082115.1 Solanum lycopersicum HOM05D006838 ORTHO05D008915 6.7e-30 134.4 132 50.0
AL103U10040 Arabidopsis lyrata HOM05D006838 ORTHO05D008915 8.8e-30 134.0 132 49.2
MSTRG.4035 Avicennia marina HOM05D006838 ORTHO05D008915 8.8e-30 134.0 132 52.3
SGA_v2.0_scaffold39G15215 Striga asiatica HOM05D006838 ORTHO05D008915 8.8e-30 134.0 134 52.2
AL4G27470 Arabidopsis lyrata HOM05D006838 ORTHO05D008915 1.2e-29 133.7 132 48.5
Sopen09g031000 Solanum pennellii HOM05D006838 ORTHO05D008915 1.5e-29 133.3 132 50.0
PGSC0003DMG400032255 Solanum tuberosum HOM05D006838 ORTHO05D008915 2.0e-29 132.9 132 50.0
THA.LOC104816050 Tarenaya hassleriana HOM05D006838 ORTHO05D008915 2.0e-29 132.9 134 49.3
Haze_00889 Corylus avellana HOM05D000001 ORTHO05D000003 2.6e-29 132.5 135 45.9
Lsat_1_v5_gn_5_35600 Lactuca sativa HOM05D006838 ORTHO05D008915 2.6e-29 132.5 132 51.5
Peaxi162Scf00092g00717 Petunia axillaris HOM05D006838 ORTHO05D008915 2.6e-29 132.5 132 51.5
unitig_32.g11729 Utricularia gibba HOM05D006838 ORTHO05D008915 2.6e-29 132.5 134 52.2
Actinidia08489 Actinidia chinensis HOM05D006838 ORTHO05D008915 3.3e-29 132.1 129 51.2
CDE05G3614 Ceratophyllum demersum HOM05D006838 ORTHO05D008915 3.3e-29 132.1 158 44.9
Prupe.1G014900 Prunus persica HOM05D006838 ORTHO05D008915 4.4e-29 131.7 133 50.4
Carub.0004s1344 Capsella rubella HOM05D006838 ORTHO05D008915 5.7e-29 131.3 132 47.0
Manes.03G177700 Manihot esculenta HOM05D006838 ORTHO05D008915 7.5e-29 131.0 133 48.9
CANSAT78G0040 Cannabis sativa HOM05D006838 ORTHO05D008915 9.7e-29 130.6 133 48.1
Cfa015659 Carpinus fangiana HOM05D006838 ORTHO05D008915 1.3e-28 130.2 135 45.2
FvH4_4g16340 Fragaria vesca HOM05D006838 ORTHO05D008915 1.3e-28 130.2 128 47.7
Sed0026467 Sechium edule HOM05D006838 ORTHO05D008915 1.3e-28 130.2 137 46.0
CiPaw.01G167000 Carya illinoinensis HOM05D006838 ORTHO05D008915 1.7e-28 129.8 133 46.6
SEGI_21646 Sequoiadendron giganteum HOM05D006838 ORTHO05D008915 6.3e-28 127.9 137 53.3
DCAR_030640 Daucus carota HOM05D006838 ORTHO05D008915 1.1e-27 127.1 125 51.2
MBI11_g31274_MAGBIO Magnolia biondii HOM05D002513 ORTHO05D002720 4.1e-27 125.2 168 41.7
Ca_24400_v3 Cicer arietinum L. HOM05D006838 ORTHO05D008915 5.3e-27 124.8 136 47.8
Gohir.A01G023700 Gossypium hirsutum HOM05D006838 ORTHO05D008915 5.3e-27 124.8 127 44.9
Potri.010G087000 Populus trichocarpa HOM05D006838 ORTHO05D008915 5.3e-27 124.8 133 47.4
Migut.G00344 Erythranthe guttata HOM05D006838 ORTHO05D008915 7.0e-27 124.4 127 49.6
CsaV3_7G022460 Cucumis sativus L. HOM05D006838 ORTHO05D008915 9.1e-27 124.0 135 45.9
Sabra08G0117200 Salix brachista HOM05D006838 ORTHO05D008915 2.7e-26 122.5 133 45.9
SalBow2G1460 Salvia bowleyana HOM05D001359 ORTHO05D001200 3.5e-26 122.1 125 49.6
SalBow2G1378 Salvia bowleyana HOM05D006838 ORTHO05D008915 5.9e-26 121.3 152 44.7
CSS0050318 Camellia sinensis var. sinensis HOM05D006838 ORTHO05D008915 7.7e-26 120.9 132 46.2
Pp3c10_20820 Physcomitrium patens HOM05D006838 ORTHO05D008915 1.0e-25 120.6 134 47.0
AagrBONN_evm.TU.Sc2ySwM_362.295 Anthoceros agrestis HOM05D006838 ORTHO05D008915 8.5e-25 117.5 134 47.0
GSVIVG01017987001 Vitis vinifera HOM05D006838 ORTHO05D008915 3.2e-24 115.5 134 43.3
Mapoly0185s0021 Marchantia polymorpha HOM05D006838 ORTHO05D008915 7.2e-24 114.4 131 45.0
Actinidia36957 Actinidia chinensis HOM05D006838 ORTHO05D008915 9.4e-24 114.0 126 45.2
MELO3C012654.2 Cucumis melo HOM05D006838 ORTHO05D008915 2.1e-23 112.8 161 39.8
AagrBONN_evm.TU.Sc2ySwM_362.293 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.0e-22 108.6 136 43.4
COL.COLO4_21487 Corchorus olitorius HOM05D006838 ORTHO05D000003 4.0e-22 108.6 113 47.8
SMO304G0126 Selaginella moellendorffii HOM05D006838 ORTHO05D008915 4.0e-22 108.6 128 42.2
FvH4_1g03680 Fragaria vesca HOM05D006838 ORTHO05D008915 8.8e-22 107.5 136 42.6
RcHm_v2.0_Chr4g0409411 Rosa chinensis HOM05D006838 ORTHO05D008915 1.5e-21 106.7 133 41.4
FAN19G3212 Fragaria x ananassa HOM05D006838 ORTHO05D008915 3.4e-21 105.5 137 43.1
Medtr5g006370 Medicago truncatula HOM05D006838 ORTHO05D008915 5.7e-21 104.8 134 40.3
Lsat_1_v5_gn_5_35680 Lactuca sativa HOM05D006838 ORTHO05D008915 4.1e-19 98.6 117 43.6
Ciclev10006131m.g Citrus clementina HOM05D006838 ORTHO05D008915 5.4e-19 98.2 109 45.9
TPR.G14291 Trifolium pratense HOM05D006838 ORTHO05D008915 1.6e-18 96.7 134 35.8
FAN17G0591 Fragaria x ananassa HOM05D006838 ORTHO05D008915 2.0e-18 96.3 103 45.6
TPR.G38007 Trifolium pratense HOM05D006838 ORTHO05D008915 1.0e-17 94.0 135 34.8
FAN22G1840 Fragaria x ananassa HOM05D006838 ORTHO05D008915 1.3e-17 93.6 128 39.8
MBI11_g31275_MAGBIO Magnolia biondii HOM05D006838 ORTHO05D008915 1.3e-17 93.6 105 44.8
Dinv44539 Davidia involucrata HOM05D006838 ORTHO05D008915 2.3e-17 92.8 100 47.0
SHI00446 Sapria himalayana HOM05D006838 ORTHO05D008915 5.5e-16 88.2 116 40.5
Aqoxy6G02670 Aquilegia oxysepala HOM05D006838 ORTHO05D008915 7.2e-16 87.8 93 48.4
vmacro15346 Vaccinium macrocarpon HOM05D006838 ORTHO05D008915 7.2e-16 87.8 99 46.5
Rhsim02G0025700 Rhododendron simsii HOM05D000001 ORTHO05D000003 4.7e-15 85.1 99 45.5
ATR0697G082 Amborella trichopoda HOM05D006838 ORTHO05D008915 8.0e-15 84.3 99 41.4
Potri.008G153602 Populus trichocarpa HOM05D006838 ORTHO05D008915 4.4e-13 78.6 83 48.2
Aqoxy4G00384 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 1.3e-12 77.0 71 52.1
Sabra10G0056600 Salix brachista HOM05D006838 ORTHO05D008915 3.5e-10 68.9 130 33.1
RcHm_v2.0_Chr4g0416061 Rosa chinensis HOM05D006838 ORTHO05D008915 1.0e-09 67.4 92 39.1
FAN17G0416 Fragaria x ananassa HOM05D006838 ORTHO05D001690 2.3e-09 66.2 97 38.1
HPP92_017391 Vanilla planifolia HOM05D006838 ORTHO05D008915 2.3e-09 66.2 72 43.1
CiPaw.06G173400 Carya illinoinensis HOM05D000986 ORTHO05D000794 8.6e-09 64.3 135 31.9
Lsat_1_v5_gn_7_76640 Lactuca sativa HOM05D000986 ORTHO05D000794 8.6e-09 64.3 132 31.8
Lsat_1_v5_gn_7_75940 Lactuca sativa HOM05D000986 ORTHO05D000794 1.1e-08 63.9 135 30.4
Nitab4.5_0000787g0200 Nicotiana tabacum HOM05D000986 ORTHO05D000794 1.5e-08 63.5 135 31.1
CAN.G798.64 Capsicum annuum HOM05D000986 ORTHO05D000794 1.9e-08 63.2 135 29.6
CAN.G2125.3 Capsicum annuum HOM05D000986 ORTHO05D000794 3.3e-08 62.4 135 29.6
Os04g0538900 Oryza sativa ssp. japonica HOM05D000986 ORTHO05D000794 3.3e-08 62.4 132 31.8
Nitab4.5_0004106g0010 Nicotiana tabacum HOM05D000986 ORTHO05D000794 5.6e-08 61.6 135 30.4
Peaxi162Scf00011g01126 Petunia axillaris HOM05D000986 ORTHO05D000794 9.5e-08 60.8 135 29.6
Peaxi162Scf00011g01219 Petunia axillaris HOM05D000986 ORTHO05D000794 9.5e-08 60.8 135 29.6
PGSC0003DMG400024895 Solanum tuberosum HOM05D000986 ORTHO05D000794 1.6e-07 60.1 135 28.9
Solyc01g103590.4 Solanum lycopersicum HOM05D000986 ORTHO05D000794 2.1e-07 59.7 135 28.9
Sopen01g045950 Solanum pennellii HOM05D000986 ORTHO05D000794 2.1e-07 59.7 135 28.9
Ciclev10002584m.g Citrus clementina HOM05D000986 ORTHO05D000794 4.7e-07 58.5 135 31.1
SGA_v2.0_scaffold272G46378 Striga asiatica HOM05D000986 ORTHO05D000794 6.1e-07 58.2 132 28.8
MSTRG.20319 Avicennia marina HOM05D000986 ORTHO05D000794 1.4e-06 57.0 132 29.5
CDE04G0314 Ceratophyllum demersum HOM05D000986 ORTHO05D000794 1.4e-06 57.0 136 29.4
Cre16.g678200 Chlamydomonas reinhardtii HOM05D000986 ORTHO05D000794 1.4e-06 57.0 127 33.1
Nn5g27843 Nelumbo nucifera HOM05D000986 ORTHO05D000794 1.4e-06 57.0 136 28.7
Nn6g32248 Nelumbo nucifera HOM05D000986 ORTHO05D000794 1.4e-06 57.0 132 29.5
QL02p100270 Quercus lobata HOM05D000986 ORTHO05D000794 1.8e-06 56.6 135 29.6
Actinidia25664 Actinidia chinensis HOM05D006838 ORTHO05D008915 2.3e-06 56.2 122 29.5
Oeu045932.1 Olea europaea HOM05D000986 ORTHO05D000794 3.0e-06 55.8 132 28.0
Duzib132G0099 Durio zibethinus HOM05D000986 ORTHO05D000794 4.0e-06 55.5 132 28.8
arahy.Tifrunner.gnm1.ann1.ZP3NZP Arachis hypogaea HOM05D000986 ORTHO05D000794 6.8e-06 54.7 132 28.8
Sabra07G0012200 Salix brachista HOM05D000986 ORTHO05D000794 6.8e-06 54.7 132 32.6
PSO675G2627 Papaver somniferum HOM05D000986 ORTHO05D000794 8.9e-06 54.3 133 28.6


User provided reference genes

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