Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0653100 Oryza sativa ssp. japonica HOM05D010868 ORTHO05D012866 1.0e-116 423.3 203 100.0
Os03g0652400 Oryza sativa ssp. japonica HOM05D010868 ORTHO05D012866 1.5e-107 392.9 202 94.1
Os03g0664300 Oryza sativa ssp. japonica HOM05D010868 ORTHO05D012866 7.1e-49 198.0 203 54.7
Os03g0668000 Oryza sativa ssp. japonica HOM05D010868 ORTHO05D012866 5.5e-41 171.8 197 51.8
Os04g0113000 Oryza sativa ssp. japonica HOM05D010868 ORTHO05D012866 1.2e-40 170.6 194 49.0
Os03g0669900 Oryza sativa ssp. japonica HOM05D010868 ORTHO05D012866 6.2e-37 158.3 194 47.4
Os01g0824700 Oryza sativa ssp. japonica HOM05D010868 ORTHO05D012866 4.2e-33 145.6 193 43.5
Os11g0633800 Oryza sativa ssp. japonica HOM05D010868 ORTHO05D012866 2.1e-24 116.7 170 40.0
Zm00001eb312790 Zea mays HOM05D010868 ORTHO05D012866 3.3e-22 109.4 214 38.3
Os03g0668100 Oryza sativa ssp. japonica HOM05D010868 ORTHO05D012866 1.8e-15 87.0 87 55.2
Zm00001eb312730 Zea mays HOM05D010868 ORTHO05D012866 2.3e-15 86.7 194 35.6
Os03g0677101 Oryza sativa ssp. japonica HOM05D010868 ORTHO05D012866 9.7e-14 81.3 85 56.5
Os08g0360400 Oryza sativa ssp. japonica HOM05D010868 ORTHO05D300787 6.3e-13 78.6 59 74.6
Zm00001eb366400 Zea mays HOM05D000664 ORTHO05D000491 8.2e-13 78.2 158 37.3
Zm00001eb312670 Zea mays HOM05D010868 ORTHO05D012866 1.1e-12 77.8 134 43.3
Os01g0876300 Oryza sativa ssp. japonica HOM05D000664 ORTHO05D000491 9.1e-12 74.7 166 35.5
FAN05G0017 Fragaria x ananassa HOM05D000664 ORTHO05D000491 3.4e-11 72.8 185 33.0
Os08g0529400 Oryza sativa ssp. japonica HOM05D000664 ORTHO05D010075 1.0e-10 71.2 160 37.5
Zm00001eb146000 Zea mays HOM05D000664 ORTHO05D000491 2.9e-10 69.7 172 33.7
Os05g0139300 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 3.8e-10 69.3 211 28.0
Os07g0535200 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 3.8e-10 69.3 184 31.5
Os07g0535100 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 6.5e-10 68.6 184 31.5
Os05g0172500 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 1.4e-09 67.4 201 30.3
MBI05_g28548_MAGBIO Magnolia biondii HOM05D000664 ORTHO05D000491 1.9e-09 67.0 197 29.4
COL.COLO4_32999 Corchorus olitorius HOM05D000664 ORTHO05D000491 2.5e-09 66.6 178 30.3
Zm00001eb036470 Zea mays HOM05D009359 ORTHO05D012866 4.2e-09 65.9 162 34.0
Os05g0177000 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 7.2e-09 65.1 164 31.1
MBI05_g44031_MAGBIO Magnolia biondii HOM05D016110 ORTHO05D000491 9.4e-09 64.7 160 31.2
Os05g0177400 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 9.4e-09 64.7 168 32.7
Rhsim04G0064500 Rhododendron simsii HOM05D000664 ORTHO05D000491 2.1e-08 63.5 184 28.3
MSTRG.24628 Avicennia marina HOM05D000007 ORTHO05D000017 2.7e-08 63.2 151 32.5
RcHm_v2.0_Chr5g0059531 Rosa chinensis HOM05D000664 ORTHO05D000491 2.7e-08 63.2 163 31.9
SalBow4G3183 Salvia bowleyana HOM05D000007 ORTHO05D000017 2.7e-08 63.2 161 31.1
CANSAT56G1116 Cannabis sativa HOM05D000007 ORTHO05D000017 3.6e-08 62.8 165 29.1
RcHm_v2.0_Chr4g0388641 Rosa chinensis HOM05D000664 ORTHO05D000491 3.6e-08 62.8 179 29.6
Os05g0177100 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 4.7e-08 62.4 168 32.7
SalBow8G0466 Salvia bowleyana HOM05D000007 ORTHO05D000017 4.7e-08 62.4 132 34.1
SalBow8G1727 Salvia bowleyana HOM05D000007 ORTHO05D000017 4.7e-08 62.4 132 34.1
CSS0008769 Camellia sinensis var. sinensis HOM05D000664 ORTHO05D000491 6.1e-08 62.0 168 29.8
CSS0011530 Camellia sinensis var. sinensis HOM05D000664 ORTHO05D000491 6.1e-08 62.0 168 29.8
Atru.chr1.870 Acer truncatum HOM05D000664 ORTHO05D000491 1.4e-07 60.8 173 29.5
Os08g0529300 Oryza sativa ssp. japonica HOM05D000664 ORTHO05D000491 1.8e-07 60.5 164 29.9
SalBow2G0242 Salvia bowleyana HOM05D003262 ORTHO05D003608 1.8e-07 60.5 130 33.1
Zm00001eb115740 Zea mays HOM05D009359 ORTHO05D000491 1.8e-07 60.5 183 29.0
COL.COLO4_37345 Corchorus olitorius HOM05D000664 ORTHO05D000491 2.3e-07 60.1 158 31.6
SalBow4G3067 Salvia bowleyana HOM05D000007 ORTHO05D000017 2.3e-07 60.1 161 32.9
Dinv32031 Davidia involucrata HOM05D000007 ORTHO05D000017 3.0e-07 59.7 179 26.8
Dinv33763 Davidia involucrata HOM05D000001 ORTHO05D000003 3.0e-07 59.7 189 24.9
COL.COLO4_37361 Corchorus olitorius HOM05D000664 ORTHO05D000491 3.9e-07 59.3 165 31.5
DCAR_018085 Daucus carota HOM05D000664 ORTHO05D000491 3.9e-07 59.3 177 29.9
ECA232G3527 Erigeron canadensis HOM05D000664 ORTHO05D000491 3.9e-07 59.3 140 31.4
FAN27G0857 Fragaria x ananassa HOM05D000664 ORTHO05D000491 3.9e-07 59.3 189 29.1
Gohir.A13G160400 Gossypium hirsutum HOM05D000664 ORTHO05D000491 3.9e-07 59.3 189 27.0
Os05g0139200 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D000491 3.9e-07 59.3 180 31.7
SalBow4G0613 Salvia bowleyana HOM05D000007 ORTHO05D000017 3.9e-07 59.3 149 30.9
Zm00001eb116670 Zea mays HOM05D009359 ORTHO05D000491 3.9e-07 59.3 175 28.0
Duzib177G1036 Durio zibethinus HOM05D000664 ORTHO05D000491 5.1e-07 58.9 208 26.4
ECA238G3553 Erigeron canadensis HOM05D004302 ORTHO05D004939 5.1e-07 58.9 125 32.8
FvH4_2g35930 Fragaria vesca HOM05D000664 ORTHO05D000491 5.1e-07 58.9 176 27.3
CSS0046565 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 8.8e-07 58.2 127 33.1
Lj5g0024418 Lotus japonicus HOM05D000007 ORTHO05D000017 8.8e-07 58.2 140 32.9
Os01g0380800 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 8.8e-07 58.2 158 29.7
Sc11g0008910 Simmondsia chinensis HOM05D004302 ORTHO05D004939 8.8e-07 58.2 125 36.0
vmacro06136 Vaccinium macrocarpon HOM05D000664 ORTHO05D000491 8.8e-07 58.2 191 29.8
Zm00001eb301870 Zea mays HOM05D009359 ORTHO05D011905 8.8e-07 58.2 172 29.1
Cc09_g00810 Coffea canephora HOM05D000007 ORTHO05D000017 1.1e-06 57.8 122 30.3
FAN22G1400 Fragaria x ananassa HOM05D000664 ORTHO05D000491 1.1e-06 57.8 167 31.1
FAN27G2908 Fragaria x ananassa HOM05D000664 ORTHO05D000491 1.1e-06 57.8 189 28.6
Nitab4.5_0000032g0090 Nicotiana tabacum HOM05D000664 ORTHO05D000491 1.1e-06 57.8 165 32.1
CiPaw.15G154900 Carya illinoinensis HOM05D000664 ORTHO05D000491 1.5e-06 57.4 195 27.2
ECA232G0437 Erigeron canadensis HOM05D000664 ORTHO05D000491 1.5e-06 57.4 157 28.7
FvH4_4g06310 Fragaria vesca HOM05D000664 ORTHO05D000491 1.5e-06 57.4 163 28.8
HanXRQChr03g0076111 Helianthus annuus HOM05D000664 ORTHO05D000491 1.5e-06 57.4 115 37.4
Manes.09G072126 Manihot esculenta HOM05D008040 ORTHO05D010075 1.5e-06 57.4 167 26.9
RcHm_v2.0_Chr4g0398061 Rosa chinensis HOM05D000664 ORTHO05D000491 1.5e-06 57.4 162 29.0
Zm00001eb301850 Zea mays HOM05D009359 ORTHO05D011905 1.5e-06 57.4 172 29.7
C05p50290 Brassica napus HOM05D000007 ORTHO05D011249 2.0e-06 57.0 126 34.1
Cc02_g08310 Coffea canephora HOM05D000007 ORTHO05D000039 2.0e-06 57.0 189 25.9
DCAR_018081 Daucus carota HOM05D000664 ORTHO05D000491 2.0e-06 57.0 178 28.1
Duzib177G1102 Durio zibethinus HOM05D000664 ORTHO05D000491 2.0e-06 57.0 202 27.7
Sabra01G0178200 Salix brachista HOM05D000664 ORTHO05D000491 2.0e-06 57.0 179 29.6
DCAR_018079 Daucus carota HOM05D000664 ORTHO05D000491 2.6e-06 56.6 196 27.6
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.6e-06 56.6 165 29.1
Lj5g0014558 Lotus japonicus HOM05D000007 ORTHO05D000017 2.6e-06 56.6 139 31.7
Prupe.3G247500 Prunus persica HOM05D004302 ORTHO05D004939 2.6e-06 56.6 127 33.9
Rhsim03G0248800 Rhododendron simsii HOM05D000664 ORTHO05D000491 2.6e-06 56.6 183 29.5
DCAR_003987 Daucus carota HOM05D000664 ORTHO05D000491 3.3e-06 56.2 182 30.2
DCAR_025461 Daucus carota HOM05D004302 ORTHO05D004939 3.3e-06 56.2 134 31.3
ECA238G1624 Erigeron canadensis HOM05D000664 ORTHO05D000491 3.3e-06 56.2 174 29.9
Migut.C00199 Erythranthe guttata HOM05D000007 ORTHO05D000017 3.3e-06 56.2 129 30.2
MD09G1076600 Malus domestica HOM05D004302 ORTHO05D004939 3.3e-06 56.2 127 33.9
Peaxi162Scf00725g00022 Petunia axillaris HOM05D000664 ORTHO05D000491 3.3e-06 56.2 194 28.9
AL4G39550 Arabidopsis lyrata HOM05D000007 ORTHO05D000017 4.4e-06 55.8 176 26.1
BolC5t33779H Brassica oleracea HOM05D000007 ORTHO05D011249 4.4e-06 55.8 126 33.3
Cc09_g00820 Coffea canephora HOM05D000007 ORTHO05D000017 4.4e-06 55.8 142 29.6
MELO3C022055.2 Cucumis melo HOM05D004302 ORTHO05D004939 4.4e-06 55.8 127 34.6
FvH4_6g52610 Fragaria vesca HOM05D000664 ORTHO05D000491 4.4e-06 55.8 158 32.3
FAN05G3039 Fragaria x ananassa HOM05D004302 ORTHO05D004939 4.4e-06 55.8 127 32.3
FAN09G3470 Fragaria x ananassa HOM05D004302 ORTHO05D004939 4.4e-06 55.8 127 32.3
FAN12G4155 Fragaria x ananassa HOM05D000664 ORTHO05D000491 4.4e-06 55.8 163 29.4
Lsat_1_v5_gn_9_51201 Lactuca sativa HOM05D000664 ORTHO05D000491 4.4e-06 55.8 169 27.8
RcHm_v2.0_Chr4g0396041 Rosa chinensis HOM05D000664 ORTHO05D000491 4.4e-06 55.8 181 27.6
RcHm_v2.0_Chr4g0398091 Rosa chinensis HOM05D000664 ORTHO05D000491 4.4e-06 55.8 169 30.8
CiPaw.09G103100 Carya illinoinensis HOM05D000007 ORTHO05D000017 5.7e-06 55.5 192 29.2
FvH4_2g35940 Fragaria vesca HOM05D000664 ORTHO05D000491 5.7e-06 55.5 174 29.3
Gorai.013G197000 Gossypium raimondii HOM05D000664 ORTHO05D000491 5.7e-06 55.5 191 27.2
FAN05G4782 Fragaria x ananassa HOM05D000664 ORTHO05D000491 7.4e-06 55.1 176 28.4
MBI05_g20724_MAGBIO Magnolia biondii HOM05D000664 ORTHO05D000491 7.4e-06 55.1 186 27.4
Oeu052874.1 Olea europaea HOM05D000007 ORTHO05D000017 7.4e-06 55.1 180 27.2
Sabra03G0161100 Salix brachista HOM05D000664 ORTHO05D001733 7.4e-06 55.1 199 27.1
SalBow8G4571 Salvia bowleyana HOM05D000007 ORTHO05D000017 7.4e-06 55.1 144 33.3
AagrBONN_evm.TU.Sc2ySwM_344.315 Anthoceros agrestis HOM05D005500 ORTHO05D006906 9.7e-06 54.7 169 28.4
CANSAT64G2833 Cannabis sativa HOM05D004302 ORTHO05D004939 9.7e-06 54.7 124 33.9
Cc07_g04590 Coffea canephora HOM05D004302 ORTHO05D004939 9.7e-06 54.7 135 31.9
Dinv04899 Davidia involucrata HOM05D000007 ORTHO05D000039 9.7e-06 54.7 193 25.9
Duzib133G0367 Durio zibethinus HOM05D004302 ORTHO05D004939 9.7e-06 54.7 126 33.3
FvH4_6g46160 Fragaria vesca HOM05D004302 ORTHO05D004939 9.7e-06 54.7 127 31.5
FvH4_6g52942 Fragaria vesca HOM05D000664 ORTHO05D000491 9.7e-06 54.7 188 26.1
FAN14G3160 Fragaria x ananassa HOM05D004302 ORTHO05D004939 9.7e-06 54.7 127 31.5
Oeu047068.1 Olea europaea HOM05D000007 ORTHO05D000017 9.7e-06 54.7 166 30.1
Os01g0379400 Oryza sativa ssp. japonica HOM05D000664 ORTHO05D000491 9.7e-06 54.7 158 27.2
RcHm_v2.0_Chr4g0388661 Rosa chinensis HOM05D000664 ORTHO05D000491 9.7e-06 54.7 159 30.2
VMungo1383G1338 Vigna mungo HOM05D004302 ORTHO05D004939 9.7e-06 54.7 128 31.2


User provided reference genes

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