Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0648900 Oryza sativa ssp. japonica HOM05D006565 ORTHO05D008717 9.9e-172 606.7 304 100.0
Zm00001eb218510 Zea mays HOM05D006565 ORTHO05D008717 2.2e-147 525.8 304 86.5
TAR636G0179 Trochodendron aralioides HOM05D006565 ORTHO05D008717 2.2e-126 456.1 287 76.7
Actinidia34736 Actinidia chinensis HOM05D006565 ORTHO05D008717 3.7e-126 455.3 287 76.7
Rhsim09G0140500 Rhododendron simsii HOM05D006565 ORTHO05D008717 9.1e-125 450.7 295 74.9
HPP92_013938 Vanilla planifolia HOM05D006565 ORTHO05D008717 1.6e-124 449.9 287 75.6
Aqoxy1G00616 Aquilegia oxysepala HOM05D006565 ORTHO05D008717 3.8e-123 445.3 287 73.9
vmacro10331 Vaccinium macrocarpon HOM05D006565 ORTHO05D008717 3.8e-123 445.3 307 72.3
Cc02_g09290 Coffea canephora HOM05D006565 ORTHO05D008717 8.5e-123 444.1 287 73.2
Prupe.2G073700 Prunus persica HOM05D006565 ORTHO05D008717 1.9e-122 443.0 290 74.5
QL04p048612 Quercus lobata HOM05D006565 ORTHO05D008717 2.5e-122 442.6 302 72.5
GSVIVG01034599001 Vitis vinifera HOM05D006565 ORTHO05D008717 4.2e-122 441.8 280 75.0
Lj5g0019410 Lotus japonicus HOM05D006565 ORTHO05D008717 5.5e-122 441.4 286 75.2
Thecc.10G119100 Theobroma cacao HOM05D006565 ORTHO05D008717 9.4e-122 440.7 288 74.0
Ciclev10015763m.g Citrus clementina HOM05D006565 ORTHO05D008717 2.1e-121 439.5 288 74.0
Glyma.20G195000 Glycine max HOM05D006565 ORTHO05D008717 2.1e-121 439.5 287 72.5
CiPaw.14G036000 Carya illinoinensis HOM05D006565 ORTHO05D008717 3.6e-121 438.7 287 73.9
Atru.chr12.1084 Acer truncatum HOM05D006565 ORTHO05D008717 4.7e-121 438.3 288 73.6
arahy.Tifrunner.gnm1.ann1.51BCJ8 Arachis hypogaea HOM05D006565 ORTHO05D008717 6.1e-121 438.0 287 73.5
ClCG05G021990 Citrullus lanatus HOM05D006565 ORTHO05D008717 8.0e-121 437.6 289 73.4
MD07G1062700 Malus domestica HOM05D006565 ORTHO05D008717 1.8e-120 436.4 289 73.0
arahy.Tifrunner.gnm1.ann1.V0HLME Arachis hypogaea HOM05D006565 ORTHO05D008717 2.3e-120 436.0 287 73.2
Eucgr.G02667 Eucalyptus grandis HOM05D006565 ORTHO05D008717 2.3e-120 436.0 288 72.2
Lalb_Chr06g0169851 Lupinus albus HOM05D006565 ORTHO05D008717 3.0e-120 435.6 287 72.8
Duzib114G0050 Durio zibethinus HOM05D006565 ORTHO05D008717 5.2e-120 434.9 288 73.6
Ca_10426_v3 Cicer arietinum L. HOM05D006565 ORTHO05D008717 8.8e-120 434.1 288 72.6
Gohir.A05G286300 Gossypium hirsutum HOM05D006565 ORTHO05D008717 1.2e-119 433.7 287 72.8
Gorai.009G302300 Gossypium raimondii HOM05D006565 ORTHO05D008717 1.5e-119 433.3 287 73.2
Manes.10G059200 Manihot esculenta HOM05D006565 ORTHO05D008717 1.5e-119 433.3 288 72.6
Sc07g0003130 Simmondsia chinensis HOM05D006565 ORTHO05D008717 2.0e-119 433.0 287 71.1
FvH4_7g05460 Fragaria vesca HOM05D006565 ORTHO05D008717 2.6e-119 432.6 288 72.6
Gohir.D05G287300 Gossypium hirsutum HOM05D006565 ORTHO05D008717 4.4e-119 431.8 287 72.8
MELO3C012330.2 Cucumis melo HOM05D006565 ORTHO05D008717 5.7e-119 431.4 289 72.3
TPR.G10259 Trifolium pratense HOM05D006565 ORTHO05D008717 7.5e-119 431.0 288 71.9
PSO339G2240 Papaver somniferum HOM05D006565 ORTHO05D008717 1.3e-118 430.3 288 71.9
Potri.010G243900 Populus trichocarpa HOM05D006565 ORTHO05D008717 1.3e-118 430.3 288 71.5
Sp4g21020 Schrenkiella parvula HOM05D006565 ORTHO05D008717 2.8e-118 429.1 280 73.9
CsaV3_5G035170 Cucumis sativus L. HOM05D006565 ORTHO05D008717 6.3e-118 427.9 289 71.6
RcHm_v2.0_Chr1g0332191 Rosa chinensis HOM05D006565 ORTHO05D008717 6.3e-118 427.9 288 72.9
RhsimUnG0215000 Rhododendron simsii HOM05D006565 ORTHO05D008717 1.4e-117 426.8 354 63.3
Medtr1g090380 Medicago truncatula HOM05D006565 ORTHO05D008717 1.8e-117 426.4 287 73.2
SGA_v2.0_scaffold90G27708 Striga asiatica HOM05D006565 ORTHO05D008717 3.1e-117 425.6 293 71.0
A03p21520 Brassica napus HOM05D006565 ORTHO05D008717 7.0e-117 424.5 290 70.7
THA.LOC104801973 Tarenaya hassleriana HOM05D006565 ORTHO05D008717 7.0e-117 424.5 293 70.0
Sed0004638 Sechium edule HOM05D006565 ORTHO05D008717 1.2e-116 423.7 289 71.6
Migut.F00832 Erythranthe guttata HOM05D006565 ORTHO05D008717 2.7e-116 422.5 280 71.8
Nn2g14368 Nelumbo nucifera HOM05D006565 ORTHO05D008717 4.5e-116 421.8 287 72.5
MSTRG.9025 Avicennia marina HOM05D006565 ORTHO05D008717 7.7e-116 421.0 287 69.0
CANSAT56G1291 Cannabis sativa HOM05D006565 ORTHO05D008717 2.2e-115 419.5 293 71.7
Lj3A921T38 Lonicera japonica HOM05D006565 ORTHO05D008717 3.8e-115 418.7 271 74.2
Dinv03812 Davidia involucrata HOM05D006565 ORTHO05D008717 5.0e-115 418.3 286 72.4
ATR0697G221 Amborella trichopoda HOM05D006565 ORTHO05D008717 6.5e-115 417.9 285 70.2
EL10Ac4g08734 Beta vulgaris HOM05D006565 ORTHO05D008717 1.1e-114 417.2 286 69.2
COL.COLO4_10008 Corchorus olitorius HOM05D006565 ORTHO05D008717 1.5e-114 416.8 288 71.9
CAN.G143.52 Capsicum annuum HOM05D006565 ORTHO05D008717 2.5e-114 416.0 280 71.1
HanXRQChr08g0217341 Helianthus annuus HOM05D006565 ORTHO05D008717 7.2e-114 414.5 286 72.4
VMungo0720G0186 Vigna mungo HOM05D006565 ORTHO05D008717 7.2e-114 414.5 309 66.7
AUR62014278 Chenopodium quinoa HOM05D006565 ORTHO05D008717 9.4e-114 414.1 286 67.8
AUR62034160 Chenopodium quinoa HOM05D006565 ORTHO05D008717 9.4e-114 414.1 286 67.8
HanXRQChr02g0049321 Helianthus annuus HOM05D006565 ORTHO05D008717 4.7e-113 411.8 288 70.5
ECA233G2794 Erigeron canadensis HOM05D006565 ORTHO05D008717 8.0e-113 411.0 286 70.6
CARHR133350 Cardamine hirsuta HOM05D006565 ORTHO05D008717 1.0e-112 410.6 290 68.3
Psat6g171600 Pisum sativum HOM05D006565 ORTHO05D008717 1.0e-112 410.6 286 68.9
Dinv06042 Davidia involucrata HOM05D006565 ORTHO05D008717 1.4e-112 410.2 273 74.0
Carub.0004s2066 Capsella rubella HOM05D006565 ORTHO05D008717 4.0e-112 408.7 301 66.1
Sabra10G0190700 Salix brachista HOM05D006565 ORTHO05D008717 8.8e-112 407.5 330 61.2
Peaxi162Scf00120g01317 Petunia axillaris HOM05D006565 ORTHO05D008717 2.0e-111 406.4 322 63.0
Sopen11g002320 Solanum pennellii HOM05D006565 ORTHO05D008717 2.0e-111 406.4 287 68.6
BolC3t14938H Brassica oleracea HOM05D006565 ORTHO05D008717 9.8e-111 404.1 273 71.1
Solyc11g006420.2 Solanum lycopersicum HOM05D006565 ORTHO05D008717 1.3e-110 403.7 287 68.3
PGSC0003DMG400014108 Solanum tuberosum HOM05D006565 ORTHO05D008717 1.3e-110 403.7 287 67.2
BraA03t11388Z Brassica rapa HOM05D006565 ORTHO05D008717 2.2e-110 402.9 273 71.4
TWI15G0448 Tripterygium wilfordii HOM05D006565 ORTHO05D008717 2.2e-110 402.9 286 68.5
Thhalv10016992m.g Eutrema salsugineum HOM05D006565 ORTHO05D008717 2.8e-110 402.5 288 67.4
AT2G38680 Arabidopsis thaliana HOM05D006565 ORTHO05D008717 7.0e-109 397.9 289 67.5
C03p25510 Brassica napus HOM05D006565 ORTHO05D008717 1.6e-108 396.7 273 70.3
Hund06810 Selenicereus undatus HOM05D006565 ORTHO05D008717 5.0e-107 391.7 286 67.1
Lsat_1_v5_gn_8_21800 Lactuca sativa HOM05D006565 ORTHO05D008717 8.6e-107 391.0 286 67.8
SEGI_36612 Sequoiadendron giganteum HOM05D006565 ORTHO05D008717 9.5e-106 387.5 267 70.4
Phvul.007G137100 Phaseolus vulgaris HOM05D006565 ORTHO05D008717 2.8e-105 386.0 287 66.2
SMO367G1082 Selaginella moellendorffii HOM05D006565 ORTHO05D008717 2.3e-104 382.9 298 63.4
CDE06G1733 Ceratophyllum demersum HOM05D006565 ORTHO05D008717 6.8e-104 381.3 273 68.5
Oeu009252.1 Olea europaea HOM05D006565 ORTHO05D008717 2.8e-102 375.9 294 64.3
Nitab4.5_0001781g0210 Nicotiana tabacum HOM05D006565 ORTHO05D008717 1.4e-101 373.6 251 72.1
AagrBONN_evm.TU.Sc2ySwM_228.2835 Anthoceros agrestis HOM05D006565 ORTHO05D008717 1.3e-99 367.1 291 63.2
Pp3c1_24570 Physcomitrium patens HOM05D006565 ORTHO05D008717 1.5e-95 353.6 289 61.2
FAN06G1903 Fragaria x ananassa HOM05D006565 ORTHO05D008717 5.4e-93 345.1 273 65.2
FAN01G3085 Fragaria x ananassa HOM05D006565 ORTHO05D008717 9.2e-93 344.4 281 62.3
Prupe.2G074100 Prunus persica HOM05D006565 ORTHO05D008717 5.0e-91 338.6 217 74.7
Mapoly0082s0075 Marchantia polymorpha HOM05D006565 ORTHO05D008717 1.2e-89 334.0 264 61.7
FAN10G4168 Fragaria x ananassa HOM05D006565 ORTHO05D008717 3.1e-88 329.3 298 59.4
FAN21G0259 Fragaria x ananassa HOM05D006565 ORTHO05D008717 8.9e-88 327.8 273 61.9
AL4G35960 Arabidopsis lyrata HOM05D006565 ORTHO05D008717 8.3e-86 321.2 298 57.4
PGSC0003DMG400001988 Solanum tuberosum HOM05D006565 ORTHO05D008717 2.3e-80 303.1 202 71.3
CBR_g36829 Chara braunii HOM05D006565 ORTHO05D001468 4.1e-77 292.4 394 41.1
FvH4_1g27810 Fragaria vesca HOM05D006565 ORTHO05D008717 3.4e-71 272.7 257 58.0
Nitab4.5_0016854g0010 Nicotiana tabacum HOM05D006565 ORTHO05D008717 4.6e-68 262.3 181 69.6
MBI05_g36782_MAGBIO Magnolia biondii HOM05D006565 ORTHO05D008717 2.8e-65 253.1 157 79.0
Haze_03436 Corylus avellana HOM05D006565 ORTHO05D008717 1.3e-57 227.6 251 50.6
Lj3A922G54 Lonicera japonica HOM05D006565 ORTHO05D008717 1.8e-56 223.8 143 73.4
Potri.008G015201 Populus trichocarpa HOM05D006565 ORTHO05D008717 8.4e-54 214.9 142 71.1
Sabra13G0091500 Salix brachista HOM05D006565 ORTHO05D008717 1.0e-51 208.0 151 65.6
PSO384G3661 Papaver somniferum HOM05D006565 ORTHO05D008717 2.1e-44 183.7 131 67.9
FAN10G3234 Fragaria x ananassa HOM05D006565 ORTHO05D008717 2.7e-44 183.3 251 45.8
Hma1.2p1_0098F.1_g048200 Hydrangea macrophylla HOM05D006565 ORTHO05D008717 5.1e-43 179.1 106 78.3
Glyma.10G195001 Glycine max HOM05D006565 ORTHO05D008717 2.2e-38 163.7 107 67.3
FAN03G2487 Fragaria x ananassa HOM05D006565 ORTHO05D008717 1.2e-36 157.9 181 51.4
FAN10G0629 Fragaria x ananassa HOM05D006565 ORTHO05D008717 1.6e-36 157.5 181 51.4
Lj3A922G55 Lonicera japonica HOM05D006565 ORTHO05D008717 1.7e-30 137.5 105 64.8
Cpa.g.sc33.128 Carica papaya HOM05D006565 ORTHO05D008717 6.5e-30 135.6 82 76.8
Cpa.g.sc33.129 Carica papaya HOM05D006565 ORTHO05D008717 1.4e-27 127.9 90 64.4
CSS0040424 Camellia sinensis var. sinensis HOM05D006565 ORTHO05D008717 5.0e-22 109.4 66 72.7
CSS0049814 Camellia sinensis var. sinensis HOM05D006565 ORTHO05D008717 3.2e-21 106.7 60 85.0
Aqoxy6G01578 Aquilegia oxysepala HOM05D006565 ORTHO05D008717 7.4e-18 95.5 144 41.7
RhsimUnG0214900 Rhododendron simsii HOM05D006565 ORTHO05D008717 2.2e-17 94.0 79 62.0
MBI15_g31580_MAGBIO Magnolia biondii HOM05D001433 ORTHO05D011977 1.1e-13 81.6 60 66.7
MBI08_g05402_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.2e-13 79.7 64 62.5
Aqoxy6G01581 Aquilegia oxysepala HOM05D006565 ORTHO05D000596 3.7e-09 66.6 51 64.7
Psat7g239080 Pisum sativum HOM05D005767 ORTHO05D006785 1.8e-08 64.3 81 43.2
MBI05_g33289_MAGBIO Magnolia biondii HOM05D006565 ORTHO05D008717 2.0e-07 60.8 46 63.0
MBI17_g02193_MAGBIO Magnolia biondii HOM05D006565 ORTHO05D011977 5.9e-07 59.3 44 65.9


User provided reference genes

Program Settings