Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0647400 Oryza sativa ssp. japonica HOM05D003879 ORTHO05D003858 6.2e-66 254.6 167 100.0
Zm00001eb218620 Zea mays HOM05D003879 ORTHO05D003858 1.5e-27 127.1 89 69.7
Zm00001eb050330 Zea mays HOM05D003879 ORTHO05D003858 2.0e-27 126.7 110 62.7
CARHR014450 Cardamine hirsuta HOM05D003879 ORTHO05D003858 3.3e-27 125.9 86 64.0
DCAR_014653 Daucus carota HOM05D003879 ORTHO05D003858 2.8e-26 122.9 77 68.8
Hma1.2p1_1079F.1_g254860 Hydrangea macrophylla HOM05D003879 ORTHO05D003858 2.8e-26 122.9 97 63.9
MBI07_g22385_MAGBIO Magnolia biondii HOM05D003879 ORTHO05D003858 3.7e-26 122.5 104 60.6
CAN.G964.6 Capsicum annuum HOM05D003879 ORTHO05D003858 8.2e-26 121.3 84 63.1
Nn5g27527 Nelumbo nucifera HOM05D003879 ORTHO05D003858 1.4e-25 120.6 90 63.3
CsaV3_5G033000 Cucumis sativus L. HOM05D003879 ORTHO05D003858 4.1e-25 119.0 75 69.3
Sp1g12410 Schrenkiella parvula HOM05D003879 ORTHO05D003858 5.3e-25 118.6 87 64.4
TAR622G1013 Trochodendron aralioides HOM05D003879 ORTHO05D003858 6.9e-25 118.2 130 51.5
HPP92_007611 Vanilla planifolia HOM05D003879 ORTHO05D003858 6.9e-25 118.2 69 73.9
MSTRG.7783 Avicennia marina HOM05D003879 ORTHO05D003858 9.1e-25 117.9 76 67.1
Solyc05g013170.2 Solanum lycopersicum HOM05D003879 ORTHO05D003858 9.1e-25 117.9 76 65.8
TWI73G0721 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 9.1e-25 117.9 77 67.5
AL1G25920 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 1.2e-24 117.5 82 62.2
Gohir.D11G305600 Gossypium hirsutum HOM05D003879 ORTHO05D003858 1.2e-24 117.5 75 68.0
AT1G14060 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 2.0e-24 116.7 94 57.4
Haze_11967 Corylus avellana HOM05D000508 ORTHO05D000371 2.0e-24 116.7 112 55.4
Sc04g0007930 Simmondsia chinensis HOM05D003879 ORTHO05D003858 2.0e-24 116.7 78 62.8
Thhalv10008923m.g Eutrema salsugineum HOM05D003879 ORTHO05D003858 2.6e-24 116.3 101 57.4
CiPaw.06G087900 Carya illinoinensis HOM05D003879 ORTHO05D003858 3.4e-24 115.9 105 55.2
Ciclev10033434m.g Citrus clementina HOM05D003879 ORTHO05D003858 4.5e-24 115.5 124 51.6
Nn3g17308 Nelumbo nucifera HOM05D003879 ORTHO05D003858 4.5e-24 115.5 75 70.7
COL.COLO4_27987 Corchorus olitorius HOM05D003879 ORTHO05D003858 7.7e-24 114.8 90 62.2
THA.LOC104805175 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 7.7e-24 114.8 119 52.1
Sopen05g007910 Solanum pennellii HOM05D003879 ORTHO05D003858 1.0e-23 114.4 73 65.8
Cpa.g.sc171.23 Carica papaya HOM05D003879 ORTHO05D003858 1.3e-23 114.0 88 59.1
vmacro16344 Vaccinium macrocarpon HOM05D003879 ORTHO05D003858 2.2e-23 113.2 89 58.4
Migut.L01257 Erythranthe guttata HOM05D003879 ORTHO05D003858 2.9e-23 112.8 76 67.1
PGR119G2196 Punica granatum HOM05D003879 ORTHO05D003858 2.9e-23 112.8 91 57.1
Prupe.1G004000 Prunus persica HOM05D003879 ORTHO05D003858 3.8e-23 112.5 77 64.9
CDE07G0815 Ceratophyllum demersum HOM05D003879 ORTHO05D003858 5.0e-23 112.1 70 67.1
MELO3C012121.2 Cucumis melo HOM05D003879 ORTHO05D003858 5.0e-23 112.1 65 70.8
Duzib268G0934 Durio zibethinus HOM05D003879 ORTHO05D003858 5.0e-23 112.1 68 67.6
Thecc.07G109400 Theobroma cacao HOM05D003879 ORTHO05D003858 5.0e-23 112.1 81 63.0
arahy.Tifrunner.gnm1.ann1.WFL4FE Arachis hypogaea HOM05D003879 ORTHO05D003858 6.5e-23 111.7 89 59.6
Actinidia31968 Actinidia chinensis HOM05D003879 ORTHO05D003858 8.5e-23 111.3 72 68.1
Eucgr.B03201 Eucalyptus grandis HOM05D003879 ORTHO05D003858 8.5e-23 111.3 90 58.9
CSS0010298 Camellia sinensis var. sinensis HOM05D003879 ORTHO05D003858 1.1e-22 110.9 75 65.3
Glyma.20G032800 Glycine max HOM05D003879 ORTHO05D003858 1.1e-22 110.9 94 57.4
Lsat_1_v5_gn_4_10781 Lactuca sativa HOM05D003879 ORTHO05D003858 1.1e-22 110.9 90 58.9
MD06G1002200 Malus domestica HOM05D003879 ORTHO05D003858 1.1e-22 110.9 89 57.3
Manes.08G154000 Manihot esculenta HOM05D003879 ORTHO05D003858 1.1e-22 110.9 84 59.5
Sed0022737 Sechium edule HOM05D003879 ORTHO05D003858 1.4e-22 110.5 111 53.2
ATR0559G110 Amborella trichopoda HOM05D003879 ORTHO05D003858 1.9e-22 110.2 88 58.0
Nitab4.5_0000391g0360 Nicotiana tabacum HOM05D003879 ORTHO05D003858 1.9e-22 110.2 71 64.8
Nitab4.5_0013306g0020 Nicotiana tabacum HOM05D003879 ORTHO05D003858 1.9e-22 110.2 82 61.0
Rhsim12G0132500 Rhododendron simsii HOM05D003879 ORTHO05D003858 1.9e-22 110.2 88 56.8
PGSC0003DMG400028395 Solanum tuberosum HOM05D003879 ORTHO05D003858 1.9e-22 110.2 70 64.3
MSTRG.2335 Avicennia marina HOM05D003879 ORTHO05D003858 2.5e-22 109.8 103 54.4
Cfa008939 Carpinus fangiana HOM05D003879 ORTHO05D003858 2.5e-22 109.8 65 72.3
ECA234G2637 Erigeron canadensis HOM05D003879 ORTHO05D003858 2.5e-22 109.8 70 68.6
Gohir.A11G287541 Gossypium hirsutum HOM05D003879 ORTHO05D003858 2.5e-22 109.8 75 62.7
SalBow8G1689 Salvia bowleyana HOM05D003879 ORTHO05D003858 2.5e-22 109.8 91 58.2
ClCG05G024040 Citrullus lanatus HOM05D003879 ORTHO05D003858 3.2e-22 109.4 81 60.5
Gohir.D11G305800 Gossypium hirsutum HOM05D003879 ORTHO05D003858 3.2e-22 109.4 74 63.5
Zm00001eb300270 Zea mays HOM05D003879 ORTHO05D003858 3.2e-22 109.4 75 66.7
TAR374G1047 Trochodendron aralioides HOM05D003879 ORTHO05D003858 4.2e-22 109.0 117 51.3
Atru.chr11.1737 Acer truncatum HOM05D003879 ORTHO05D003858 5.5e-22 108.6 84 59.5
CDE04G3169 Ceratophyllum demersum HOM05D000406 ORTHO05D007930 5.5e-22 108.6 70 64.3
FAN01G2110 Fragaria x ananassa HOM05D003879 ORTHO05D003858 5.5e-22 108.6 115 48.7
Gorai.007G326500 Gossypium raimondii HOM05D003879 ORTHO05D003858 5.5e-22 108.6 75 62.7
Duzib251G0512 Durio zibethinus HOM05D003879 ORTHO05D003858 7.2e-22 108.2 94 57.4
unitig_21.g20857 Utricularia gibba HOM05D003879 ORTHO05D003858 7.2e-22 108.2 103 54.4
TWI60G0224 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 9.4e-22 107.8 87 56.3
Ca_08721_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 1.2e-21 107.5 92 55.4
FAN10G1503 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.2e-21 107.5 122 46.7
HanXRQChr12g0361951 Helianthus annuus HOM05D003879 ORTHO05D003858 1.2e-21 107.5 90 56.7
Actinidia17746 Actinidia chinensis HOM05D003879 ORTHO05D003858 1.6e-21 107.1 70 65.7
arahy.Tifrunner.gnm1.ann1.8KK2IT Arachis hypogaea HOM05D003879 ORTHO05D003858 1.6e-21 107.1 96 55.2
Carub.0001s1375 Capsella rubella HOM05D003879 ORTHO05D003858 1.6e-21 107.1 77 58.4
Lalb_Chr09g0329191 Lupinus albus HOM05D003879 ORTHO05D003858 1.6e-21 107.1 90 54.4
MD04G1004200 Malus domestica HOM05D003879 ORTHO05D003858 1.6e-21 107.1 75 61.3
EL10Ac6g13251 Beta vulgaris HOM05D003879 ORTHO05D003858 2.1e-21 106.7 86 55.8
PSO063G6167 Papaver somniferum HOM05D003879 ORTHO05D003858 2.1e-21 106.7 94 51.1
QL03p069280 Quercus lobata HOM05D003879 ORTHO05D003858 2.1e-21 106.7 88 53.4
FvH4_7g07760 Fragaria vesca HOM05D003879 ORTHO05D003858 2.7e-21 106.3 121 49.6
FAN06G4142 Fragaria x ananassa HOM05D003879 ORTHO05D003858 2.7e-21 106.3 121 49.6
BcaB03g13115 Brassica carinata HOM05D003879 ORTHO05D003858 3.6e-21 105.9 80 60.0
A08p32120 Brassica napus HOM05D003879 ORTHO05D003858 3.6e-21 105.9 124 50.0
BolC8t49272H Brassica oleracea HOM05D003879 ORTHO05D003858 3.6e-21 105.9 67 67.2
BraA08t35135Z Brassica rapa HOM05D003879 ORTHO05D003858 3.6e-21 105.9 124 50.0
Lj4g0023987 Lotus japonicus HOM05D003879 ORTHO05D003858 3.6e-21 105.9 80 60.0
Thecc.02G340900 Theobroma cacao HOM05D003879 ORTHO05D003858 3.6e-21 105.9 85 60.0
Aqoxy5G03435 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 4.7e-21 105.5 66 66.7
ECA233G3198 Erigeron canadensis HOM05D003879 ORTHO05D003858 4.7e-21 105.5 65 69.2
Os07g0158400 Oryza sativa ssp. japonica HOM05D003879 ORTHO05D003858 4.7e-21 105.5 83 63.9
Phvul.002G169800 Phaseolus vulgaris HOM05D003879 ORTHO05D003858 4.7e-21 105.5 79 60.8
Ah.03g134780 Amaranthus hybridus HOM05D003879 ORTHO05D003858 6.1e-21 105.1 72 59.7
SGA_v2.0_scaffold36G14411 Striga asiatica HOM05D003879 ORTHO05D003858 6.1e-21 105.1 105 51.4
BcaC07g38717 Brassica carinata HOM05D003879 ORTHO05D003858 7.9e-21 104.8 86 57.0
C08p16470 Brassica napus HOM05D003879 ORTHO05D003858 7.9e-21 104.8 86 57.0
Ah.02g129450 Amaranthus hybridus HOM05D003879 ORTHO05D003858 1.0e-20 104.4 72 59.7
Medtr4g082300 Medicago truncatula HOM05D003879 ORTHO05D003858 1.0e-20 104.4 84 58.3
RhsimUnG0183500 Rhododendron simsii HOM05D003879 ORTHO05D003858 1.0e-20 104.4 90 53.3
Cc11_g12680 Coffea canephora HOM05D003879 ORTHO05D003858 1.4e-20 104.0 85 56.5
Dinv34127 Davidia involucrata HOM05D003879 ORTHO05D003858 1.4e-20 104.0 117 49.6
Lsat_1_v5_gn_8_48881 Lactuca sativa HOM05D003879 ORTHO05D003858 1.4e-20 104.0 80 57.5
Rhsim05G0092100 Rhododendron simsii HOM05D003879 ORTHO05D003858 1.4e-20 104.0 74 60.8
Nitab4.5_0004690g0010 Nicotiana tabacum HOM05D003879 ORTHO05D003858 1.8e-20 103.6 71 60.6
Psat7g156280 Pisum sativum HOM05D003879 ORTHO05D003858 1.8e-20 103.6 73 60.3
arahy.Tifrunner.gnm1.ann1.1F58IB Arachis hypogaea HOM05D003879 ORTHO05D003858 2.3e-20 103.2 94 54.3
Dinv16679 Davidia involucrata HOM05D003879 ORTHO05D003858 3.0e-20 102.8 92 55.4
Aqoxy4G02841 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 3.9e-20 102.4 96 54.2
RcHm_v2.0_Chr1g0342011 Rosa chinensis HOM05D003879 ORTHO05D003858 6.7e-20 101.7 76 56.6
PGSC0003DMG400002853 Solanum tuberosum HOM05D003879 ORTHO05D003858 6.7e-20 101.7 72 59.7
SGA_v2.0_scaffold455G51901 Striga asiatica HOM05D003879 ORTHO05D003858 6.7e-20 101.7 121 49.6
Aa31LG1G980 Aethionema arabicum HOM05D003879 ORTHO05D003858 8.8e-20 101.3 78 52.6
Phvul.005G037600 Phaseolus vulgaris HOM05D003879 ORTHO05D003858 8.8e-20 101.3 103 49.5
Sopen04g001620 Solanum pennellii HOM05D003879 ORTHO05D003858 8.8e-20 101.3 72 61.1
COL.COLO4_17583 Corchorus olitorius HOM05D003879 ORTHO05D003858 1.1e-19 100.9 63 63.5
SHI14928 Sapria himalayana HOM05D003879 ORTHO05D003858 1.1e-19 100.9 77 57.1
THA.LOC104824074 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 1.1e-19 100.9 63 66.7
VMungo0251G2410 Vigna mungo HOM05D003879 ORTHO05D003858 1.5e-19 100.5 102 52.0
Lj4g0017661 Lotus japonicus HOM05D003879 ORTHO05D003858 2.6e-19 99.8 63 63.5
CiPaw.07G072500 Carya illinoinensis HOM05D003879 ORTHO05D003858 3.3e-19 99.4 82 56.1
Solyc04g005580.1 Solanum lycopersicum HOM05D003879 ORTHO05D003858 3.3e-19 99.4 72 61.1
Prupe.5G003300 Prunus persica HOM05D003879 ORTHO05D003858 4.4e-19 99.0 101 51.5
Sabra19G0093000 Salix brachista HOM05D003879 ORTHO05D003858 4.4e-19 99.0 71 60.6
Potri.019G081400 Populus trichocarpa HOM05D003879 ORTHO05D003858 7.4e-19 98.2 71 60.6
BcaB08g34356 Brassica carinata HOM05D003879 ORTHO05D003858 1.3e-18 97.4 109 44.0
BcaB08g34355 Brassica carinata HOM05D003879 ORTHO05D003858 2.2e-18 96.7 109 44.0
BcaB08g34363 Brassica carinata HOM05D003879 ORTHO05D003858 2.2e-18 96.7 109 44.0
BcaB08g34365 Brassica carinata HOM05D003879 ORTHO05D003858 2.2e-18 96.7 118 41.5
BcaB08g34362 Brassica carinata HOM05D003879 ORTHO05D003858 2.8e-18 96.3 109 44.0
TPR.G34072 Trifolium pratense HOM05D003879 ORTHO05D003858 2.8e-18 96.3 92 51.1
BcaC07g41607 Brassica carinata HOM05D003879 ORTHO05D003858 8.2e-18 94.7 88 50.0
BolC8t52157H Brassica oleracea HOM05D003879 ORTHO05D003858 8.2e-18 94.7 88 50.0
C08p46070 Brassica napus HOM05D003879 ORTHO05D003858 1.1e-17 94.4 123 43.1
Manes.01G033400 Manihot esculenta HOM05D003879 ORTHO05D003858 1.1e-17 94.4 81 53.1
arahy.Tifrunner.gnm1.ann1.BSX7E4 Arachis hypogaea HOM05D003879 ORTHO05D003858 1.4e-17 94.0 79 55.7
Pp3c16_17450 Physcomitrium patens HOM05D003879 ORTHO05D003858 1.4e-17 94.0 90 53.3
Potri.013G099100 Populus trichocarpa HOM05D003879 ORTHO05D003858 1.4e-17 94.0 134 39.6
Potri.013G109100 Populus trichocarpa HOM05D003879 ORTHO05D003858 1.4e-17 94.0 70 58.6
Mapoly0084s0083 Marchantia polymorpha HOM05D003879 ORTHO05D003858 1.8e-17 93.6 128 45.3
Nitab4.5_0000014g0130 Nicotiana tabacum HOM05D003879 ORTHO05D003858 4.1e-17 92.4 83 50.6
BraA09t41615Z Brassica rapa HOM05D003879 ORTHO05D003858 9.1e-17 91.3 120 40.8
Sabra13G0083700 Salix brachista HOM05D003879 ORTHO05D003858 9.1e-17 91.3 136 41.9
Sabra13G0085000 Salix brachista HOM05D003879 ORTHO05D003858 9.1e-17 91.3 136 41.9
AUR62005832 Chenopodium quinoa HOM05D003879 ORTHO05D003858 2.0e-16 90.1 75 56.0
Lj3P1034T75 Lonicera japonica HOM05D003879 ORTHO05D003858 3.5e-16 89.4 67 58.2
A09p62510 Brassica napus HOM05D003879 ORTHO05D003858 7.7e-16 88.2 115 38.3
PSO478G4561 Papaver somniferum HOM05D003879 ORTHO05D003858 1.3e-15 87.4 75 52.0
AUR62032825 Chenopodium quinoa HOM05D000508 ORTHO05D000371 2.2e-15 86.7 73 54.8
PSO017G6566 Papaver somniferum HOM05D003879 ORTHO05D003858 2.9e-15 86.3 75 50.7
Lalb_Chr16g0385721 Lupinus albus HOM05D003879 ORTHO05D003858 1.1e-14 84.3 60 56.7
BcaC07g40413 Brassica carinata HOM05D000331 ORTHO05D003858 1.9e-14 83.6 132 34.8
CBR_g26201 Chara braunii HOM05D003879 ORTHO05D003858 7.2e-14 81.6 76 50.0
Ca_08720_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 1.6e-13 80.5 77 48.1
SalBow1G6087 Salvia bowleyana HOM05D003879 ORTHO05D003858 1.6e-13 80.5 66 56.1
SalBow6G3484 Salvia bowleyana HOM05D003879 ORTHO05D003858 1.6e-13 80.5 66 56.1
SalBow6G4156 Salvia bowleyana HOM05D003879 ORTHO05D003858 1.6e-13 80.5 66 56.1
SalBow8G1644 Salvia bowleyana HOM05D003879 ORTHO05D003858 1.6e-13 80.5 66 56.1
FvH4_5g26420 Fragaria vesca HOM05D003879 ORTHO05D003858 3.6e-13 79.3 84 50.0
FAN13G1900 Fragaria x ananassa HOM05D003879 ORTHO05D003858 3.6e-13 79.3 84 50.0
FAN18G4377 Fragaria x ananassa HOM05D003879 ORTHO05D003858 3.6e-13 79.3 84 50.0
SMO353G0120 Selaginella moellendorffii HOM05D003879 ORTHO05D003858 6.1e-13 78.6 72 52.8
Carub.0001s1374 Capsella rubella HOM05D003879 ORTHO05D003858 5.2e-12 75.5 86 41.9
Lj6C784G16 Lonicera japonica HOM05D000508 ORTHO05D006805 1.1e-11 74.3 69 43.5
AT5G57570 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 2.6e-11 73.2 93 45.2
BraA09t40680Z Brassica rapa HOM05D003879 ORTHO05D003858 2.6e-11 73.2 102 39.2
AL1G24290 Arabidopsis lyrata HOM05D005566 ORTHO05D007534 4.4e-11 72.4 90 44.4
MCO14G435 Micromonas commoda HOM05D003879 ORTHO05D003858 1.4e-09 67.4 58 53.4
Cre14.g619950 Chlamydomonas reinhardtii HOM05D003879 ORTHO05D003858 3.1e-09 66.2 114 43.0
AL1G25890 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 7.0e-09 65.1 69 43.5
Sp1g12000 Schrenkiella parvula HOM05D011464 ORTHO05D003858 1.6e-08 63.9 73 45.2
AT5G57640 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 3.5e-08 62.8 85 42.4
Mapoly0074s0048 Marchantia polymorpha HOM05D003879 ORTHO05D003858 3.5e-08 62.8 90 36.7
CARHR014440 Cardamine hirsuta HOM05D003879 ORTHO05D003858 1.0e-07 61.2 62 38.7
AL1G25910 Arabidopsis lyrata HOM05D011464 ORTHO05D003858 1.3e-07 60.8 59 44.1
BcaB08g36120 Brassica carinata HOM05D015339 ORTHO05D003858 1.3e-07 60.8 93 33.3
Carub.0004s2200 Capsella rubella HOM05D003879 ORTHO05D003858 1.7e-07 60.5 108 35.2
BcaC04g19944 Brassica carinata HOM05D015339 ORTHO05D003858 2.9e-07 59.7 115 32.2
BolC9t57805H Brassica oleracea HOM05D015339 ORTHO05D003858 2.9e-07 59.7 115 32.2
Carub.0008s1815 Capsella rubella HOM05D003879 ORTHO05D003858 3.8e-07 59.3 111 37.8
C09p49520 Brassica napus HOM05D015339 ORTHO05D003858 6.5e-07 58.5 115 32.2
Carub.0006s0105 Capsella rubella HOM05D003879 ORTHO05D003858 6.5e-07 58.5 59 49.2
AL6G11440 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 8.5e-07 58.2 92 39.1
A10p15050 Brassica napus HOM05D015339 ORTHO05D003858 4.2e-06 55.8 102 33.3
BraA10t43587Z Brassica rapa HOM05D015339 ORTHO05D003858 4.2e-06 55.8 102 33.3
SpUn0238_0010 Schrenkiella parvula HOM05D011464 ORTHO05D014025 5.5e-06 55.5 83 38.6
CARHR014430 Cardamine hirsuta HOM05D003879 ORTHO05D003858 7.2e-06 55.1 71 39.4
Glyma.07G228500 Glycine max HOM05D003879 ORTHO05D003858 9.4e-06 54.7 32 75.0


User provided reference genes

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