Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 1.7e-238 828.9 416 100.0
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 2.7e-212 741.9 414 91.1
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 1.5e-194 682.9 417 81.5
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 7.0e-168 594.3 402 74.4
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 3.8e-166 588.6 369 78.6
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 3.8e-166 588.6 369 79.1
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 8.5e-166 587.4 382 75.7
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 8.5e-166 587.4 369 79.1
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 1.5e-165 586.6 370 77.3
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 6.1e-164 581.3 396 72.5
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 1.4e-163 580.1 386 74.9
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 3.0e-163 578.9 389 74.6
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 4.0e-163 578.6 384 74.2
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 8.8e-163 577.4 380 75.5
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 3.4e-162 575.5 389 74.6
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 5.7e-162 574.7 369 77.5
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 1.7e-161 573.2 380 74.7
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 1.4e-160 570.1 383 74.4
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 3.1e-160 568.9 369 76.2
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 4.1e-160 568.5 367 76.6
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 7.0e-160 567.8 396 72.2
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 7.0e-160 567.8 377 74.3
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 9.1e-160 567.4 371 76.5
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 1.2e-159 567.0 366 77.0
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 7.7e-159 564.3 395 71.9
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 7.7e-159 564.3 388 72.7
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 1.0e-158 563.9 377 74.0
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 1.0e-158 563.9 354 77.4
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 1.7e-158 563.1 389 73.5
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 1.7e-158 563.1 381 73.8
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 5.0e-158 561.6 385 72.7
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 5.0e-158 561.6 366 75.4
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 6.5e-158 561.2 378 74.6
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 6.5e-158 561.2 386 71.8
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 1.5e-157 560.1 352 77.6
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 1.5e-157 560.1 388 72.2
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 4.2e-157 558.5 399 70.2
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 7.2e-157 557.8 377 73.7
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 9.5e-157 557.4 353 77.3
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 9.5e-157 557.4 377 73.2
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 9.5e-157 557.4 377 73.7
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 1.6e-156 556.6 377 73.2
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 2.1e-156 556.2 392 71.7
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 2.1e-156 556.2 377 72.9
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 3.6e-156 555.4 377 74.0
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 6.1e-156 554.7 377 74.0
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 8.0e-156 554.3 353 77.1
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 1.4e-155 553.5 369 74.0
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 4.0e-155 552.0 327 82.3
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 6.8e-155 551.2 384 72.1
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 6.8e-155 551.2 375 72.8
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 6.8e-155 551.2 375 72.8
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 6.8e-155 551.2 359 76.0
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 1.2e-154 550.4 359 75.5
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 2.0e-154 549.7 374 73.3
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 2.6e-154 549.3 349 77.1
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 3.4e-154 548.9 381 71.9
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 4.4e-154 548.5 381 71.7
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 4.4e-154 548.5 375 72.8
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 7.5e-154 547.7 389 71.7
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 7.5e-154 547.7 345 77.4
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 7.5e-154 547.7 368 72.8
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 1.3e-153 547.0 423 66.4
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 1.7e-153 546.6 378 73.0
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 2.2e-153 546.2 375 72.8
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 2.8e-153 545.8 337 79.5
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 3.7e-153 545.4 375 72.5
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 3.7e-153 545.4 403 69.0
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 4.9e-153 545.0 345 76.5
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 8.3e-153 544.3 375 72.0
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 1.1e-152 543.9 370 73.0
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 1.8e-152 543.1 368 72.3
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 4.1e-152 542.0 391 70.3
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 9.2e-152 540.8 348 75.0
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 1.2e-151 540.4 356 73.0
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 2.7e-151 539.3 357 73.9
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 3.5e-151 538.9 378 71.7
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 4.5e-151 538.5 376 71.3
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 4.5e-151 538.5 344 74.7
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 5.9e-151 538.1 370 74.1
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 5.9e-151 538.1 348 74.4
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 7.7e-151 537.7 353 74.8
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 1.0e-150 537.3 356 73.9
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 1.0e-150 537.3 375 71.7
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 1.7e-150 536.6 348 73.6
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 2.3e-150 536.2 356 72.8
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 2.9e-150 535.8 356 72.5
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 3.3e-149 532.3 376 70.5
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 5.6e-149 531.6 380 70.3
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 1.6e-148 530.0 396 71.5
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 2.8e-148 529.3 356 71.3
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 6.1e-148 528.1 339 75.8
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 8.0e-148 527.7 346 74.9
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 2.3e-147 526.2 380 68.4
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 5.2e-147 525.0 349 72.8
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 5.2e-147 525.0 383 69.2
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 5.2e-147 525.0 376 70.2
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 8.9e-147 524.2 352 72.2
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 8.9e-147 524.2 356 71.9
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 1.5e-146 523.5 352 72.4
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 5.7e-146 521.5 369 69.1
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 7.5e-146 521.2 377 70.0
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 1.8e-144 516.5 314 79.0
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 1.6e-143 513.5 361 71.2
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 3.3e-141 505.8 391 66.5
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 3.1e-139 499.2 347 69.2
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 9.8e-138 494.2 382 66.2
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 3.7e-137 492.3 435 62.3
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 5.4e-136 488.4 353 68.8
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 3.0e-134 482.6 314 75.5
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 1.1e-133 480.7 391 65.0
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 3.3e-133 479.2 376 63.3
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 3.3e-133 479.2 391 64.7
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 8.1e-132 474.6 573 48.3
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 1.8e-131 473.4 371 67.4
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 2.4e-128 463.0 292 78.4
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 1.2e-124 450.7 351 63.5
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 3.5e-111 406.0 289 69.6
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 1.1e-107 394.4 385 57.4
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 3.7e-76 289.7 194 75.8
PSO384G1669 Papaver somniferum HOM05D005562 ORTHO05D007785 2.8e-68 263.5 374 44.4
Cpa.g.sc62.58 Carica papaya HOM05D005562 ORTHO05D007785 4.1e-67 259.6 147 81.6
HanXRQChr10g0318401 Helianthus annuus HOM05D005562 ORTHO05D007785 3.5e-58 229.9 187 59.9
DCAR_021731 Daucus carota HOM05D005562 ORTHO05D007785 3.0e-54 216.9 298 46.3
Cpa.g.sc62.56 Carica papaya HOM05D005562 ORTHO05D007785 5.3e-51 206.1 187 58.3
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 3.2e-48 196.8 140 70.7
Oeu021926.1 Olea europaea HOM05D005562 ORTHO05D007785 3.7e-44 183.3 110 80.9
Actinidia17880 Actinidia chinensis HOM05D005562 ORTHO05D007785 2.0e-37 161.0 108 72.2
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 1.9e-32 144.4 81 82.7
Cfa027024 Carpinus fangiana HOM05D005562 ORTHO05D121372 1.6e-31 141.4 345 29.9
Actinidia17845 Actinidia chinensis HOM05D005562 ORTHO05D030745 6.4e-28 129.4 84 72.6
SEGI_28239 Sequoiadendron giganteum HOM05D005562 ORTHO05D007785 2.3e-25 120.9 83 67.5
A10p14750 Brassica napus HOM05D005562 ORTHO05D007785 5.8e-13 79.7 53 73.6
CSS0029422 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D111180 4.9e-12 76.6 93 46.2
Glyma.08G079000 Glycine max HOM05D005562 ORTHO05D007785 2.7e-10 70.9 41 78.0
Glyma.08G079050 Glycine max HOM05D005562 ORTHO05D213306 2.1e-07 61.2 52 57.7


User provided reference genes

Program Settings