Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0616500 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D007554 0.0e+00 1637.5 874 100.0
Zm00001eb051460 Zea mays HOM05D000726 ORTHO05D007554 0.0e+00 1172.1 891 71.4
Nn4g25316 Nelumbo nucifera HOM05D000726 ORTHO05D007554 3.4e-188 662.9 802 46.3
Actinidia36435 Actinidia chinensis HOM05D000726 ORTHO05D007554 4.2e-183 646.0 805 44.6
Prupe.6G221900 Prunus persica HOM05D000726 ORTHO05D007554 1.6e-182 644.0 793 46.0
TAR376G0399 Trochodendron aralioides HOM05D000726 ORTHO05D007554 2.1e-182 643.7 812 45.2
MD02G1184600 Malus domestica HOM05D000726 ORTHO05D007554 1.0e-181 641.3 808 45.5
QL06p039670 Quercus lobata HOM05D000726 ORTHO05D007554 1.8e-181 640.6 805 45.0
Manes.13G112300 Manihot esculenta HOM05D000726 ORTHO05D007554 3.0e-181 639.8 912 42.1
CSS0022432 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 3.4e-180 636.3 802 44.5
CSS0015479 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 7.5e-180 635.2 802 44.5
Potri.007G055400 Populus trichocarpa HOM05D000726 ORTHO05D007554 2.8e-179 633.3 859 43.7
Haze_15292 Corylus avellana HOM05D000726 ORTHO05D007554 2.4e-178 630.2 800 45.5
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 2.4e-178 630.2 782 45.0
Cfa004123 Carpinus fangiana HOM05D000726 ORTHO05D007554 7.0e-178 628.6 797 45.4
Thecc.01G071800 Theobroma cacao HOM05D000726 ORTHO05D007554 1.2e-177 627.9 899 42.2
RcHm_v2.0_Chr2g0138631 Rosa chinensis HOM05D000726 ORTHO05D007554 2.5e-175 620.2 799 45.3
Atru.BG.105.p Acer truncatum HOM05D000726 ORTHO05D007554 3.6e-174 616.3 757 46.8
Sabra07G0047700 Salix brachista HOM05D000726 ORTHO05D007554 1.0e-173 614.8 784 44.4
TWI09G1290 Tripterygium wilfordii HOM05D000726 ORTHO05D007554 2.3e-173 613.6 798 44.4
Cc07_g07020 Coffea canephora HOM05D000726 ORTHO05D007554 4.0e-173 612.8 793 44.1
Atru.chr3.177 Acer truncatum HOM05D000726 ORTHO05D007554 6.8e-173 612.1 772 44.9
Aqoxy6G02647 Aquilegia oxysepala HOM05D000726 ORTHO05D007554 8.9e-173 611.7 782 44.9
PSO675G6338 Papaver somniferum HOM05D000726 ORTHO05D007554 1.2e-172 611.3 802 44.9
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 3.4e-172 609.8 796 45.6
Gorai.007G222900 Gossypium raimondii HOM05D000726 ORTHO05D007554 7.5e-172 608.6 896 40.8
Duzib147G0272 Durio zibethinus HOM05D000726 ORTHO05D007554 9.8e-172 608.2 800 43.1
FvH4_6g31560 Fragaria vesca HOM05D000726 ORTHO05D007554 1.3e-171 607.8 796 44.8
PSO541G0636 Papaver somniferum HOM05D000726 ORTHO05D007554 1.3e-171 607.8 802 44.8
Ciclev10024730m.g Citrus clementina HOM05D000726 ORTHO05D007554 1.7e-171 607.4 798 44.7
FAN14G0573 Fragaria x ananassa HOM05D000726 ORTHO05D007554 2.9e-171 606.7 797 44.7
Gohir.D11G207900 Gossypium hirsutum HOM05D000726 ORTHO05D007554 1.1e-170 604.7 896 40.6
FAN05G3645 Fragaria x ananassa HOM05D000726 ORTHO05D007554 7.0e-170 602.1 863 42.6
Sc03g0002340 Simmondsia chinensis HOM05D000726 ORTHO05D007554 9.2e-170 601.7 773 43.3
Gohir.A11G215400 Gossypium hirsutum HOM05D000726 ORTHO05D007554 3.5e-169 599.7 896 40.4
arahy.Tifrunner.gnm1.ann1.1ZHU8Z Arachis hypogaea HOM05D000726 ORTHO05D007554 6.0e-169 599.0 805 42.4
vmacro05404 Vaccinium macrocarpon HOM05D000726 ORTHO05D007554 6.0e-169 599.0 813 42.8
VMungo1215G2083 Vigna mungo HOM05D000726 ORTHO05D007554 1.3e-168 597.8 843 41.3
Glyma.01G193500 Glycine max HOM05D000726 ORTHO05D007554 1.7e-168 597.4 767 43.7
Migut.H00354 Erythranthe guttata HOM05D000726 ORTHO05D007554 3.0e-168 596.7 764 44.0
Phvul.002G011500 Phaseolus vulgaris HOM05D000726 ORTHO05D007554 6.6e-168 595.5 875 40.6
Eucgr.H02305 Eucalyptus grandis HOM05D000726 ORTHO05D007554 1.9e-167 594.0 774 44.8
HanXRQChr12g0373111 Helianthus annuus HOM05D000726 ORTHO05D007554 2.5e-167 593.6 762 43.2
Nitab4.5_0001417g0030 Nicotiana tabacum HOM05D000726 ORTHO05D007554 3.3e-167 593.2 780 43.5
Hund16395 Selenicereus undatus HOM05D000726 ORTHO05D007554 5.6e-167 592.4 769 44.2
CANSAT01G3261 Cannabis sativa HOM05D000726 ORTHO05D007554 7.3e-167 592.0 807 43.1
ATR0208G028 Amborella trichopoda HOM05D000726 ORTHO05D007554 2.1e-166 590.5 797 43.7
Ca_24700_v3 Cicer arietinum L. HOM05D000726 ORTHO05D007554 2.8e-166 590.1 798 42.0
Sed0012994 Sechium edule HOM05D000726 ORTHO05D007554 1.8e-165 587.4 767 44.2
Lalb_Chr09g0323571 Lupinus albus HOM05D000726 ORTHO05D007554 6.8e-165 585.5 774 43.8
MELO3C007629.2 Cucumis melo HOM05D000726 ORTHO05D007554 8.9e-165 585.1 807 41.9
Nitab4.5_0006813g0010 Nicotiana tabacum HOM05D000726 ORTHO05D007554 1.5e-164 584.3 739 44.7
arahy.Tifrunner.gnm1.ann1.6361M0 Arachis hypogaea HOM05D000726 ORTHO05D007554 2.6e-164 583.6 789 42.6
PGSC0003DMG400009094 Solanum tuberosum HOM05D000726 ORTHO05D007554 1.7e-163 580.9 774 44.2
ClCG01G017520 Citrullus lanatus HOM05D000726 ORTHO05D007554 2.2e-163 580.5 779 43.4
CsaV3_6G044070 Cucumis sativus L. HOM05D000726 ORTHO05D007554 2.9e-163 580.1 802 42.4
Medtr5g015600 Medicago truncatula HOM05D000726 ORTHO05D007554 8.3e-163 578.6 889 38.9
Sopen03g007820 Solanum pennellii HOM05D000726 ORTHO05D007554 1.4e-162 577.8 774 43.9
PGR102G1358 Punica granatum HOM05D000726 ORTHO05D007554 1.9e-162 577.4 919 39.6
MSTRG.23676 Avicennia marina HOM05D000726 ORTHO05D007554 3.2e-162 576.6 759 44.4
Solyc03g044020.4 Solanum lycopersicum HOM05D000726 ORTHO05D007554 4.1e-162 576.2 774 43.9
Lj2g0006912 Lotus japonicus HOM05D000726 ORTHO05D007554 2.7e-161 573.5 808 41.5
ECA232G2303 Erigeron canadensis HOM05D000726 ORTHO05D007554 3.5e-161 573.2 773 41.9
Lsat_1_v5_gn_4_160781 Lactuca sativa HOM05D000726 ORTHO05D007554 4.6e-161 572.8 782 41.8
SHI31766 Sapria himalayana HOM05D000726 ORTHO05D007554 1.0e-160 571.6 795 42.8
COL.COLO4_11566 Corchorus olitorius HOM05D000726 ORTHO05D007554 2.5e-159 567.0 907 39.1
Dinv26921 Davidia involucrata HOM05D000726 ORTHO05D007554 3.3e-159 566.6 674 47.6
Cpa.g.sc6.26 Carica papaya HOM05D000726 ORTHO05D007554 1.6e-158 564.3 741 43.3
EL10Ac6g15628 Beta vulgaris HOM05D000726 ORTHO05D007554 2.1e-158 563.9 758 42.7
Peaxi162Scf00118g01929 Petunia axillaris HOM05D000726 ORTHO05D007554 1.4e-157 561.2 732 42.9
TPR.G34847 Trifolium pratense HOM05D000726 ORTHO05D007554 2.3e-157 560.5 881 38.5
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 3.4e-156 556.6 794 42.9
CAN.G278.12 Capsicum annuum HOM05D000726 ORTHO05D007554 4.4e-156 556.2 772 42.2
THA.LOC104819266 Tarenaya hassleriana HOM05D000726 ORTHO05D007554 4.4e-156 556.2 766 42.3
Ah.03g140460 Amaranthus hybridus HOM05D000726 ORTHO05D007554 2.2e-155 553.9 745 42.1
Thhalv10023223m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 1.3e-152 544.7 774 40.8
CARHR056360 Cardamine hirsuta HOM05D000726 ORTHO05D007554 2.3e-152 543.9 794 40.9
SGA_v2.0_scaffold15G07449 Striga asiatica HOM05D000726 ORTHO05D007554 2.3e-152 543.9 841 39.8
C06p38860 Brassica napus HOM05D000726 ORTHO05D007554 3.9e-152 543.1 785 41.0
Psat2g171280 Pisum sativum HOM05D000726 ORTHO05D007554 1.9e-151 540.8 832 38.8
BolC6t38979H Brassica oleracea HOM05D000726 ORTHO05D007554 4.7e-150 536.2 785 40.8
AL2G19510 Arabidopsis lyrata HOM05D000726 ORTHO05D007554 2.4e-149 533.9 770 40.5
Sp5g19220 Schrenkiella parvula HOM05D000726 ORTHO05D007554 4.0e-149 533.1 785 40.6
Aa31LG2G2150 Aethionema arabicum HOM05D000726 ORTHO05D007554 1.3e-147 528.1 771 39.7
Lj7A95G20 Lonicera japonica HOM05D000726 ORTHO05D007554 2.2e-147 527.3 763 41.5
AUR62003999 Chenopodium quinoa HOM05D000726 ORTHO05D007554 4.9e-147 526.2 774 39.7
CDE04G3158 Ceratophyllum demersum HOM05D000726 ORTHO05D007554 1.9e-146 524.2 648 45.8
DCAR_010826 Daucus carota HOM05D000726 ORTHO05D007554 9.2e-146 521.9 884 37.9
BraA07t30892Z Brassica rapa HOM05D000726 ORTHO05D007554 1.0e-144 518.5 783 40.0
A07p32680 Brassica napus HOM05D000726 ORTHO05D007554 3.0e-144 516.9 751 40.9
AT1G64960 Arabidopsis thaliana HOM05D000726 ORTHO05D007554 5.1e-144 516.2 774 39.7
BcaB03g15339 Brassica carinata HOM05D000726 ORTHO05D007554 3.6e-142 510.0 782 39.9
Thhalv10000018m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 4.7e-142 509.6 787 38.6
Carub.0002s1010 Capsella rubella HOM05D000726 ORTHO05D007554 2.0e-140 504.2 688 42.2
SEGI_06920 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 1.7e-139 501.1 730 41.5
AUR62040247 Chenopodium quinoa HOM05D000726 ORTHO05D007554 8.4e-131 472.2 634 42.1
Thhalv10001287m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 3.9e-128 463.4 731 38.3
HPP92_028352 Vanilla planifolia HOM05D000726 ORTHO05D007554 1.3e-123 448.4 640 41.7
Thhalv10006613m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 5.6e-119 433.0 783 35.8
SMO364G0657 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 1.6e-118 431.4 744 37.0
GSVIVG01000124001 Vitis vinifera HOM05D000726 ORTHO05D007554 2.8e-118 430.6 406 55.4
HPP92_014039 Vanilla planifolia HOM05D000726 ORTHO05D007554 6.2e-118 429.5 450 51.1
Mapoly0045s0033 Marchantia polymorpha HOM05D000726 ORTHO05D007554 1.1e-117 428.7 750 37.7
unitig_0.g505 Utricularia gibba HOM05D000726 ORTHO05D007554 1.7e-115 421.4 608 40.1
AagrBONN_evm.TU.Sc2ySwM_117.495 Anthoceros agrestis HOM05D000726 ORTHO05D007554 4.6e-113 413.3 733 36.3
SEGI_38739 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 3.0e-112 410.6 553 42.7
SalBow3G2688 Salvia bowleyana HOM05D000726 ORTHO05D007554 5.1e-104 383.3 550 41.5
CiPaw.01G005400 Carya illinoinensis HOM05D000726 ORTHO05D007554 1.8e-69 268.5 310 46.5
PRCOL_00006071 Prasinoderma coloniale HOM05D000726 ORTHO05D007554 3.1e-61 241.1 467 32.1
Glyma.11G048432 Glycine max HOM05D000726 ORTHO05D007554 6.6e-59 233.4 238 51.7
CBR_g29418 Chara braunii HOM05D000019 ORTHO05D000002 5.8e-55 220.3 339 36.0
Cre06.g262800 Chlamydomonas reinhardtii HOM05D000726 ORTHO05D007554 1.1e-48 199.5 483 31.5
Oeu003558.1 Olea europaea HOM05D000726 ORTHO05D007554 1.4e-40 172.6 249 41.0
Sabra16G0084600 Salix brachista HOM05D000726 ORTHO05D007554 4.9e-38 164.1 320 34.4
Sabra11G0026400 Salix brachista HOM05D000726 ORTHO05D007554 5.4e-37 160.6 309 34.6
Sabra11G0056500 Salix brachista HOM05D000726 ORTHO05D007554 1.3e-35 156.0 311 34.4
HPP92_014040 Vanilla planifolia HOM05D000726 ORTHO05D007554 2.0e-31 142.1 313 31.6
RcHm_v2.0_Chr2g0138441 Rosa chinensis HOM05D000726 ORTHO05D007554 1.5e-23 115.9 357 29.4
SEGI_24863 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 4.2e-21 107.8 160 41.9
Glyma.08G243550 Glycine max HOM05D000726 ORTHO05D025659 1.3e-14 86.3 168 34.5
Nn1g04578 Nelumbo nucifera HOM05D000726 ORTHO05D007554 1.6e-09 69.3 113 37.2


User provided reference genes

Program Settings