Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0604600 Oryza sativa ssp. japonica HOM05D006481 ORTHO05D008160 0.0e+00 1127.1 599 100.0
Zm00001eb050130 Zea mays HOM05D006481 ORTHO05D008160 5.8e-192 674.9 610 65.9
TAR376G0872 Trochodendron aralioides HOM05D006481 ORTHO05D008160 3.0e-95 353.6 443 51.7
Aqoxy6G02732 Aquilegia oxysepala HOM05D006481 ORTHO05D008160 3.3e-94 350.1 632 40.7
Actinidia34372 Actinidia chinensis HOM05D006481 ORTHO05D008160 5.3e-92 342.8 446 50.4
Manes.10G058310 Manihot esculenta HOM05D006481 ORTHO05D008160 5.5e-89 332.8 466 48.9
CiPaw.05G015400 Carya illinoinensis HOM05D006481 ORTHO05D008160 2.1e-88 330.9 483 47.4
QL11p031947 Quercus lobata HOM05D006481 ORTHO05D008160 4.6e-88 329.7 454 49.3
Dinv42219 Davidia involucrata HOM05D006481 ORTHO05D008160 6.0e-88 329.3 476 47.5
PSO675G3182 Papaver somniferum HOM05D006481 ORTHO05D008160 7.9e-88 328.9 471 48.6
Dinv15788 Davidia involucrata HOM05D006481 ORTHO05D008160 1.0e-87 328.6 477 47.8
HPP92_017760 Vanilla planifolia HOM05D006481 ORTHO05D008160 1.0e-87 328.6 555 43.2
PSO541G1903 Papaver somniferum HOM05D006481 ORTHO05D008160 3.3e-86 323.6 471 47.6
Cfa004657 Carpinus fangiana HOM05D006481 ORTHO05D008160 4.3e-86 323.2 456 49.1
Haze_10252 Corylus avellana HOM05D006481 ORTHO05D008160 9.6e-86 322.0 459 48.6
Prupe.8G140600 Prunus persica HOM05D006481 ORTHO05D008160 9.6e-86 322.0 457 46.6
Potri.009G090900 Populus trichocarpa HOM05D006481 ORTHO05D008160 1.4e-84 318.2 456 48.5
FvH4_2g03900 Fragaria vesca HOM05D006481 ORTHO05D008160 4.0e-84 316.6 464 46.6
FAN15G2146 Fragaria x ananassa HOM05D006481 ORTHO05D008160 2.0e-83 314.3 464 46.3
Atru.BG.62.p Acer truncatum HOM05D006481 ORTHO05D008160 2.6e-83 313.9 432 48.4
TWI14G1262 Tripterygium wilfordii HOM05D006481 ORTHO05D008160 4.5e-83 313.2 495 43.8
CSS0020952 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 5.8e-83 312.8 652 39.3
CSS0029586 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 1.0e-82 312.0 652 39.3
Gohir.D12G020600 Gossypium hirsutum HOM05D006481 ORTHO05D008160 1.0e-82 312.0 479 46.8
FAN27G2785 Fragaria x ananassa HOM05D006481 ORTHO05D008160 1.3e-82 311.6 464 46.3
Sed0008985 Sechium edule HOM05D006481 ORTHO05D008160 1.3e-82 311.6 481 44.3
GSVIVG01037865001 Vitis vinifera HOM05D006481 ORTHO05D008160 1.3e-82 311.6 469 46.1
Lj5A217G88 Lonicera japonica HOM05D006481 ORTHO05D008160 8.4e-82 308.9 410 50.2
COL.COLO4_32543 Corchorus olitorius HOM05D006481 ORTHO05D008160 1.9e-81 307.8 607 41.5
Nitab4.5_0001105g0200 Nicotiana tabacum HOM05D006481 ORTHO05D008160 2.5e-81 307.4 462 46.1
Duzib132G1015 Durio zibethinus HOM05D006481 ORTHO05D008160 4.2e-81 306.6 593 40.5
SalBow6G0734 Salvia bowleyana HOM05D006481 ORTHO05D008160 5.5e-81 306.2 437 48.1
RcHm_v2.0_Chr6g0252931 Rosa chinensis HOM05D006481 ORTHO05D008160 7.1e-81 305.8 483 44.9
Nitab4.5_0004685g0050 Nicotiana tabacum HOM05D006481 ORTHO05D008160 1.2e-80 305.1 457 47.3
Potri.001G296700 Populus trichocarpa HOM05D006481 ORTHO05D008160 7.9e-80 302.4 459 46.0
Thecc.02G113600 Theobroma cacao HOM05D006481 ORTHO05D008160 5.1e-79 299.7 469 45.4
Cpa.g.sc106.79 Carica papaya HOM05D006481 ORTHO05D008160 1.1e-78 298.5 505 43.8
Solyc01g107260.4 Solanum lycopersicum HOM05D006481 ORTHO05D008160 1.5e-78 298.1 495 44.2
ATR0030G005 Amborella trichopoda HOM05D006481 ORTHO05D008160 4.3e-78 296.6 447 45.9
Lalb_Chr02g0145111 Lupinus albus HOM05D006481 ORTHO05D008160 4.3e-78 296.6 568 41.5
MD05G1096200 Malus domestica HOM05D006481 ORTHO05D008160 4.3e-78 296.6 424 47.6
DCAR_021965 Daucus carota HOM05D006481 ORTHO05D008160 5.7e-78 296.2 467 45.6
AUR62027350 Chenopodium quinoa HOM05D006481 ORTHO05D008160 1.3e-77 295.0 419 47.3
MELO3C017986.2 Cucumis melo HOM05D006481 ORTHO05D008160 1.3e-77 295.0 500 43.0
Sopen01g049510 Solanum pennellii HOM05D006481 ORTHO05D008160 1.3e-77 295.0 495 44.4
Ah.14g085520 Amaranthus hybridus HOM05D006481 ORTHO05D008160 1.6e-77 294.7 430 48.6
AUR62031332 Chenopodium quinoa HOM05D006481 ORTHO05D008160 2.8e-77 293.9 419 46.8
Gorai.008G021000 Gossypium raimondii HOM05D006481 ORTHO05D008160 3.7e-77 293.5 479 45.1
Medtr1g106795 Medicago truncatula HOM05D006481 ORTHO05D008160 3.7e-77 293.5 456 46.3
TPR.G27130 Trifolium pratense HOM05D006481 ORTHO05D008160 3.7e-77 293.5 414 46.9
Sabra16G0185800 Salix brachista HOM05D006481 ORTHO05D008160 4.8e-77 293.1 414 47.8
vmacro01976 Vaccinium macrocarpon HOM05D006481 ORTHO05D008160 6.3e-77 292.7 432 45.4
Gohir.A12G020400 Gossypium hirsutum HOM05D006481 ORTHO05D008160 1.1e-76 292.0 396 49.5
Aa31LG10G4220 Aethionema arabicum HOM05D006481 ORTHO05D008160 1.8e-76 291.2 431 46.4
CsaV3_4G000490 Cucumis sativus L. HOM05D006481 ORTHO05D008160 3.1e-76 290.4 491 42.8
CAN.G606.42 Capsicum annuum HOM05D006481 ORTHO05D008160 2.6e-75 287.3 530 41.3
arahy.Tifrunner.gnm1.ann1.IH69Y8 Arachis hypogaea HOM05D006481 ORTHO05D008160 3.4e-75 287.0 407 47.9
Cc02_g30880 Coffea canephora HOM05D006481 ORTHO05D008160 3.4e-75 287.0 480 44.0
arahy.Tifrunner.gnm1.ann1.RQ9967 Arachis hypogaea HOM05D006481 ORTHO05D008160 1.0e-74 285.4 423 47.8
unitig_744.g24217 Utricularia gibba HOM05D006481 ORTHO05D008160 1.0e-74 285.4 485 43.3
Ca_11047_v3 Cicer arietinum L. HOM05D006481 ORTHO05D008160 1.3e-74 285.0 420 47.1
Glyma.20G132200 Glycine max HOM05D006481 ORTHO05D008160 2.9e-74 283.9 413 48.7
THA.LOC104825834 Tarenaya hassleriana HOM05D006481 ORTHO05D008160 3.8e-74 283.5 384 49.7
Lj5g0022753 Lotus japonicus HOM05D006481 ORTHO05D008160 1.1e-73 282.0 436 46.1
MSTRG.16692 Avicennia marina HOM05D006481 ORTHO05D008160 1.4e-73 281.6 471 44.8
Lsat_1_v5_gn_5_114361 Lactuca sativa HOM05D006481 ORTHO05D008160 4.2e-73 280.0 367 48.2
AL1G57410 Arabidopsis lyrata HOM05D006481 ORTHO05D008160 5.5e-73 279.6 429 45.5
Ciclev10027845m.g Citrus clementina HOM05D006481 ORTHO05D008160 5.5e-73 279.6 445 43.6
Sabra09G0070200 Salix brachista HOM05D006481 ORTHO05D008160 3.5e-72 276.9 390 48.5
VMungo0720G0067 Vigna mungo HOM05D006481 ORTHO05D008160 4.6e-72 276.6 393 48.3
EL10Ac8g19363 Beta vulgaris HOM05D006481 ORTHO05D008160 6.1e-72 276.2 493 44.0
Migut.B00421 Erythranthe guttata HOM05D006481 ORTHO05D008160 7.9e-72 275.8 486 41.6
TAR628G0609 Trochodendron aralioides HOM05D006481 ORTHO05D008160 1.0e-71 275.4 399 45.9
AT1G49870 Arabidopsis thaliana HOM05D006481 ORTHO05D008160 1.3e-71 275.0 422 45.7
Phvul.007G043300 Phaseolus vulgaris HOM05D006481 ORTHO05D008160 1.1e-70 271.9 412 47.6
Oeu021369.1 Olea europaea HOM05D006481 ORTHO05D008160 9.7e-70 268.9 493 42.2
ClCG10G010570 Citrullus lanatus HOM05D006481 ORTHO05D008160 1.6e-69 268.1 578 37.9
Psat6g216240 Pisum sativum HOM05D006481 ORTHO05D008160 2.2e-69 267.7 445 43.4
Carub.0001s3908 Capsella rubella HOM05D006481 ORTHO05D008160 1.2e-67 261.9 615 36.1
CARHR039920 Cardamine hirsuta HOM05D006481 ORTHO05D008160 2.0e-67 261.2 379 45.1
BolC8t47171H Brassica oleracea HOM05D006481 ORTHO05D008160 7.7e-67 259.2 420 45.5
HanXRQChr16g0514441 Helianthus annuus HOM05D006481 ORTHO05D008160 1.3e-66 258.5 368 46.7
Sp1g36750 Schrenkiella parvula HOM05D006481 ORTHO05D008160 1.3e-66 258.5 406 44.1
ECA234G0568 Erigeron canadensis HOM05D006481 ORTHO05D008160 1.7e-66 258.1 381 44.1
Thhalv10011233m.g Eutrema salsugineum HOM05D006481 ORTHO05D008160 3.8e-66 256.9 430 44.0
A08p03520 Brassica napus HOM05D006481 ORTHO05D008160 6.5e-66 256.1 427 45.2
BcaB04g17289 Brassica carinata HOM05D006481 ORTHO05D008160 1.1e-65 255.4 394 44.2
Peaxi162Scf00016g02732 Petunia axillaris HOM05D006481 ORTHO05D008160 1.1e-65 255.4 442 42.1
RhsimUnG0125900 Rhododendron simsii HOM05D006481 ORTHO05D008160 1.4e-65 255.0 455 42.2
C08p03680 Brassica napus HOM05D006481 ORTHO05D008160 1.9e-65 254.6 370 47.0
Rhsim11G0154700 Rhododendron simsii HOM05D006481 ORTHO05D008160 1.9e-65 254.6 451 42.4
SGA_v2.0_scaffold225G43011 Striga asiatica HOM05D006481 ORTHO05D008160 5.5e-65 253.1 402 45.0
BraA08t32385Z Brassica rapa HOM05D006481 ORTHO05D008160 4.6e-64 250.0 426 44.4
PGSC0003DMG400025848 Solanum tuberosum HOM05D006481 ORTHO05D008160 1.3e-58 231.9 501 39.3
Eucgr.I01079 Eucalyptus grandis HOM05D006481 ORTHO05D008160 5.1e-55 219.9 510 38.0
SEGI_11188 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 6.1e-48 196.4 308 41.9
SEGI_37018 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 6.1e-48 196.4 308 41.9
CDE04G1272 Ceratophyllum demersum HOM05D006481 ORTHO05D008160 1.9e-41 174.9 317 41.0
SEGI_25924 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 1.8e-36 158.3 372 37.6
SMO196G0099 Selaginella moellendorffii HOM05D006481 ORTHO05D008160 5.2e-31 140.2 408 34.1
Sc14g0002570 Simmondsia chinensis HOM05D006481 ORTHO05D008160 1.2e-30 139.0 239 44.4
Pp3c18_18840 Physcomitrium patens HOM05D006481 ORTHO05D008160 2.8e-29 134.4 363 34.2
MD10G1102400 Malus domestica HOM05D006481 ORTHO05D008160 2.9e-26 124.4 150 52.7
SHI05066 Sapria himalayana HOM05D006481 ORTHO05D008160 1.7e-21 108.6 129 48.1
FAN20G1292 Fragaria x ananassa HOM05D006481 ORTHO05D008160 1.9e-17 95.1 174 39.7
CBR_g49330 Chara braunii HOM05D006481 ORTHO05D008160 5.6e-17 93.6 259 33.2
EL10Ac6g13964 Beta vulgaris HOM05D006481 ORTHO05D008160 9.5e-17 92.8 199 41.7
Hma1.2p1_1361F.1_g278150 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 3.1e-15 87.8 175 38.9
MD10G1102500 Malus domestica HOM05D006481 ORTHO05D008160 2.0e-11 75.1 144 38.9
Hma1.2p1_0000F.1_g001000 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 1.5e-09 68.9 215 30.7
SHI05065 Sapria himalayana HOM05D006481 ORTHO05D008160 1.4e-07 62.4 110 40.0
TAR628G0206 Trochodendron aralioides HOM05D006481 ORTHO05D008160 2.6e-06 58.2 152 35.5
BcaC05g27423 Brassica carinata HOM05D006481 ORTHO05D008160 3.4e-06 57.8 43 65.1


User provided reference genes

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