Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0577100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 2.8e-261 904.8 483 100.0
Os08g0163100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 1.2e-235 819.7 470 93.2
Zm00001eb064460 Zea mays HOM05D004546 ORTHO05D005419 1.3e-88 331.3 408 50.2
HPP92_000323 Vanilla planifolia HOM05D004546 ORTHO05D005419 2.3e-85 320.5 446 43.0
Aqoxy6G00209 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 3.6e-67 260.0 447 37.6
PGSC0003DMG400010002 Solanum tuberosum HOM05D004546 ORTHO05D005419 4.7e-67 259.6 452 36.5
Phvul.002G249700 Phaseolus vulgaris HOM05D004546 ORTHO05D005419 8.9e-66 255.4 455 37.1
vmacro01757 Vaccinium macrocarpon HOM05D004546 ORTHO05D005419 1.2e-65 255.0 441 36.5
GSVIVG01035964001 Vitis vinifera HOM05D004546 ORTHO05D005419 2.6e-65 253.8 457 35.2
TAR628G0514 Trochodendron aralioides HOM05D004546 ORTHO05D005419 3.4e-65 253.4 406 39.2
Cfa005513 Carpinus fangiana HOM05D004546 ORTHO05D005419 4.4e-65 253.1 445 37.3
Duzib177G0829 Durio zibethinus HOM05D004546 ORTHO05D005419 5.8e-65 252.7 441 37.2
Sc11g0004500 Simmondsia chinensis HOM05D004546 ORTHO05D005419 5.8e-65 252.7 456 35.5
Hma1.2p1_1482F.1_g286200 Hydrangea macrophylla HOM05D004546 ORTHO05D005419 7.5e-65 252.3 441 35.1
CSS0049092 Camellia sinensis var. sinensis HOM05D004546 ORTHO05D005419 1.3e-64 251.5 448 35.9
Gorai.001G269700 Gossypium raimondii HOM05D004546 ORTHO05D005419 4.9e-64 249.6 453 36.4
Thecc.05G227600 Theobroma cacao HOM05D004546 ORTHO05D005419 6.4e-64 249.2 441 36.5
VMungo0251G0798 Vigna mungo HOM05D004546 ORTHO05D005419 8.3e-64 248.8 469 35.6
Lalb_Chr12g0204461 Lupinus albus HOM05D004546 ORTHO05D005419 2.4e-63 247.3 443 35.0
Rhsim09G0016100 Rhododendron simsii HOM05D004546 ORTHO05D005419 7.1e-63 245.7 426 36.9
TPR.G23101 Trifolium pratense HOM05D004546 ORTHO05D005419 9.2e-63 245.4 444 35.8
DCAR_006706 Daucus carota HOM05D004546 ORTHO05D005419 1.2e-62 245.0 378 39.2
CiPaw.05G045000 Carya illinoinensis HOM05D004546 ORTHO05D005419 2.1e-62 244.2 378 41.0
Rhsim11G0128800 Rhododendron simsii HOM05D004546 ORTHO05D005419 2.1e-62 244.2 436 36.2
PSO210G6794 Papaver somniferum HOM05D004546 ORTHO05D005419 7.8e-62 242.3 446 35.2
CARHR052070 Cardamine hirsuta HOM05D004546 ORTHO05D005419 3.9e-61 240.0 444 34.7
CsaV3_5G025650 Cucumis sativus L. HOM05D004546 ORTHO05D005419 3.3e-60 236.9 442 35.7
PSO210G7371 Papaver somniferum HOM05D004546 ORTHO05D005419 4.3e-60 236.5 446 34.3
Sed0013794 Sechium edule HOM05D004546 ORTHO05D005419 5.6e-60 236.1 417 37.9
THA.LOC104809617 Tarenaya hassleriana HOM05D004546 ORTHO05D005419 7.3e-60 235.7 441 33.8
Sp2g03510 Schrenkiella parvula HOM05D004546 ORTHO05D005419 9.6e-60 235.3 441 34.9
Carub.0002s0420 Capsella rubella HOM05D004546 ORTHO05D005419 3.6e-59 233.4 441 33.6
AT1G61000 Arabidopsis thaliana HOM05D004546 ORTHO05D005419 4.7e-59 233.0 441 34.2
Ciclev10015244m.g Citrus clementina HOM05D004546 ORTHO05D005419 6.2e-59 232.6 375 39.2
Potri.007G116200 Populus trichocarpa HOM05D004546 ORTHO05D005419 8.1e-59 232.3 442 33.9
Sabra17G0029200 Salix brachista HOM05D004546 ORTHO05D005419 2.4e-58 230.7 449 34.1
Potri.017G043000 Populus trichocarpa HOM05D004546 ORTHO05D005419 4.0e-58 229.9 445 33.9
BolC4t24246H Brassica oleracea HOM05D004546 ORTHO05D005419 8.9e-58 228.8 450 34.2
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 4.4e-57 226.5 426 34.5
ECA234G1828 Erigeron canadensis HOM05D004546 ORTHO05D005419 4.4e-57 226.5 453 32.5
SHI16664 Sapria himalayana HOM05D004546 ORTHO05D005419 4.4e-57 226.5 433 33.0
Peaxi162Scf00152g01427 Petunia axillaris HOM05D004546 ORTHO05D005419 5.8e-57 226.1 432 34.5
Glyma.05G169000 Glycine max HOM05D004546 ORTHO05D005419 9.9e-57 225.3 443 34.5
Migut.B00830 Erythranthe guttata HOM05D004546 ORTHO05D005419 3.8e-56 223.4 433 33.9
Rhsim09G0048700 Rhododendron simsii HOM05D004546 ORTHO05D005419 3.8e-56 223.4 318 41.8
Cc02_g22580 Coffea canephora HOM05D004546 ORTHO05D005419 1.4e-55 221.5 446 33.4
Gohir.D06G191600 Gossypium hirsutum HOM05D004546 ORTHO05D005419 2.4e-55 220.7 453 34.7
EL10Ac2g02703 Beta vulgaris HOM05D004546 ORTHO05D005419 4.2e-55 219.9 445 32.6
C03p25600 Brassica napus HOM05D004546 ORTHO05D005419 4.2e-55 219.9 450 33.6
MSTRG.16518 Avicennia marina HOM05D004546 ORTHO05D005419 9.3e-55 218.8 433 34.6
QL02p098920 Quercus lobata HOM05D004546 ORTHO05D005419 1.2e-54 218.4 325 40.0
ClCG03G000010 Citrullus lanatus HOM05D004546 ORTHO05D005419 1.6e-54 218.0 462 33.3
FAN02G2941 Fragaria x ananassa HOM05D004546 ORTHO05D005419 3.5e-54 216.9 442 33.0
Ah.14g086060 Amaranthus hybridus HOM05D004546 ORTHO05D005419 7.8e-54 215.7 433 33.3
BolC3t14948H Brassica oleracea HOM05D004546 ORTHO05D005419 1.0e-53 215.3 459 32.9
Lj4g0018170 Lotus japonicus HOM05D004546 ORTHO05D005419 2.3e-53 214.2 451 33.5
A03p21620 Brassica napus HOM05D004546 ORTHO05D005419 3.0e-53 213.8 459 32.5
BraA03t11397Z Brassica rapa HOM05D004546 ORTHO05D005419 3.0e-53 213.8 459 32.5
Nitab4.5_0003652g0050 Nicotiana tabacum HOM05D004546 ORTHO05D005419 3.0e-53 213.8 415 33.7
Sopen10g008970 Solanum pennellii HOM05D004546 ORTHO05D005419 3.9e-53 213.4 456 32.0
Thhalv10023463m.g Eutrema salsugineum HOM05D004546 ORTHO05D005419 6.6e-53 212.6 441 32.4
Atru.chr8.1488 Acer truncatum HOM05D004546 ORTHO05D005419 1.1e-52 211.8 378 34.7
Solyc10g019040.2 Solanum lycopersicum HOM05D004546 ORTHO05D005419 1.9e-52 211.1 350 37.1
Prupe.1G570900 Prunus persica HOM05D004546 ORTHO05D005419 5.6e-52 209.5 378 35.2
CDE08G0494 Ceratophyllum demersum HOM05D004546 ORTHO05D005419 9.6e-52 208.8 390 37.2
Nitab4.5_0000753g0130 Nicotiana tabacum HOM05D004546 ORTHO05D005419 2.8e-51 207.2 415 32.5
Eucgr.G00575 Eucalyptus grandis HOM05D004546 ORTHO05D005419 3.6e-51 206.8 358 36.3
Haze_01703 Corylus avellana HOM05D004546 ORTHO05D005419 6.2e-51 206.1 550 30.0
C04p25630 Brassica napus HOM05D004546 ORTHO05D005419 1.1e-50 205.3 499 30.9
Gohir.A06G184800 Gossypium hirsutum HOM05D004546 ORTHO05D005419 3.1e-50 203.8 417 35.0
Actinidia00204 Actinidia chinensis HOM05D004546 ORTHO05D005419 1.2e-49 201.8 445 32.4
Medtr8g088840 Medicago truncatula HOM05D004546 ORTHO05D005419 1.5e-49 201.4 443 32.5
Psat7g062000 Pisum sativum HOM05D004546 ORTHO05D005419 4.4e-49 199.9 443 32.1
RcHm_v2.0_Chr7g0222021 Rosa chinensis HOM05D004546 ORTHO05D005419 5.8e-49 199.5 378 34.9
FvH4_6g25020 Fragaria vesca HOM05D004546 ORTHO05D005419 6.4e-48 196.1 442 31.2
arahy.Tifrunner.gnm1.ann1.QA5S84 Arachis hypogaea HOM05D004546 ORTHO05D005419 1.9e-47 194.5 449 31.6
arahy.Tifrunner.gnm1.ann1.SB4BQ5 Arachis hypogaea HOM05D004546 ORTHO05D005419 3.2e-47 193.7 449 31.4
SGA_v2.0_scaffold110G31325 Striga asiatica HOM05D004546 ORTHO05D005419 3.2e-47 193.7 438 32.9
HanXRQChr10g0290511 Helianthus annuus HOM05D004546 ORTHO05D005419 4.2e-47 193.4 452 31.9
Atru.chr13.2649 Acer truncatum HOM05D004546 ORTHO05D005419 1.2e-46 191.8 275 40.7
Ca_17808_v3 Cicer arietinum L. HOM05D004546 ORTHO05D005419 6.0e-46 189.5 381 34.1
Gorai.010G224800 Gossypium raimondii HOM05D004546 ORTHO05D005419 7.8e-46 189.1 441 32.2
FAN05G4088 Fragaria x ananassa HOM05D004546 ORTHO05D005419 2.3e-45 187.6 407 32.7
Medtr4g049650 Medicago truncatula HOM05D004546 ORTHO05D005419 2.3e-45 187.6 363 33.1
Cpa.g.sc8.264 Carica papaya HOM05D004546 ORTHO05D005419 6.6e-45 186.0 306 37.9
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 4.3e-44 183.3 445 31.9
CANSAT54G1257 Cannabis sativa HOM05D004546 ORTHO05D005419 7.3e-44 182.6 360 34.2
Lsat_1_v5_gn_5_105520 Lactuca sativa HOM05D004546 ORTHO05D005419 2.1e-43 181.0 447 28.0
BcaC02g10598 Brassica carinata HOM05D004546 ORTHO05D005419 6.2e-43 179.5 466 29.4
FAN14G0315 Fragaria x ananassa HOM05D004546 ORTHO05D005419 8.1e-43 179.1 469 29.6
Gohir.D07G234200 Gossypium hirsutum HOM05D004546 ORTHO05D005419 1.4e-42 178.3 453 30.7
TWI59G0103 Tripterygium wilfordii HOM05D004546 ORTHO05D005419 4.0e-42 176.8 316 37.3
Hund15499 Selenicereus undatus HOM05D004546 ORTHO05D005419 6.9e-42 176.0 329 34.3
RcHm_v2.0_Chr1g0336301 Rosa chinensis HOM05D004546 ORTHO05D005419 9.0e-42 175.6 357 32.5
Dinv24291 Davidia involucrata HOM05D004546 ORTHO05D005419 1.2e-41 175.3 445 29.0
Peaxi162Scf00152g01529 Petunia axillaris HOM05D004546 ORTHO05D005419 1.5e-41 174.9 389 32.9
Sabra07G0094500 Salix brachista HOM05D004546 ORTHO05D005419 5.8e-41 172.9 592 25.8
TPR.G28353 Trifolium pratense HOM05D004546 ORTHO05D005419 1.3e-40 171.8 291 35.7
Gohir.A07G227000 Gossypium hirsutum HOM05D004546 ORTHO05D005419 1.7e-40 171.4 417 31.7
Medtr8g088800 Medicago truncatula HOM05D004546 ORTHO05D005419 2.2e-40 171.0 311 35.7
AUR62014224 Chenopodium quinoa HOM05D004546 ORTHO05D005419 6.4e-40 169.5 413 31.2
MD08G1233000 Malus domestica HOM05D004546 ORTHO05D005419 3.2e-39 167.2 441 28.6
FvH4_7g06682 Fragaria vesca HOM05D004546 ORTHO05D005419 7.1e-39 166.0 433 28.9
PGR042G1236 Punica granatum HOM05D004546 ORTHO05D005419 1.2e-38 165.2 376 31.1
CAN.G1330.18 Capsicum annuum HOM05D004546 ORTHO05D005419 1.6e-38 164.9 380 31.8
FAN06G4932 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.6e-38 164.9 433 28.9
AUR62041118 Chenopodium quinoa HOM05D004546 ORTHO05D005419 6.0e-38 162.9 385 31.9
Manes.10G066500 Manihot esculenta HOM05D004546 ORTHO05D005419 6.0e-38 162.9 378 32.5
AL2G15450 Arabidopsis lyrata HOM05D004546 ORTHO05D005419 1.3e-37 161.8 306 35.0
Carub.0002s0419 Capsella rubella HOM05D004546 ORTHO05D005419 1.3e-37 161.8 439 28.9
ATR0177G064 Amborella trichopoda HOM05D004546 ORTHO05D005419 3.0e-37 160.6 343 32.7
Lj5A252T47 Lonicera japonica HOM05D004546 ORTHO05D005419 1.5e-36 158.3 450 28.2
MD15G1425300 Malus domestica HOM05D004546 ORTHO05D005419 2.1e-35 154.5 441 27.0
Nn1g08777 Nelumbo nucifera HOM05D004546 ORTHO05D005419 6.9e-34 149.4 341 32.6
COL.COLO4_10577 Corchorus olitorius HOM05D004546 ORTHO05D005419 2.6e-33 147.5 302 35.4
MELO3C002916.2 Cucumis melo HOM05D004546 ORTHO05D005419 1.3e-32 145.2 221 42.1
GSVIVG01022895001 Vitis vinifera HOM05D004546 ORTHO05D005419 2.2e-32 144.4 457 25.6
Oeu033122.2 Olea europaea HOM05D004546 ORTHO05D005419 2.9e-32 144.1 252 32.5
SEGI_32079 Sequoiadendron giganteum HOM05D004546 ORTHO05D005419 2.9e-32 144.1 419 28.9
unitig_8.g2954 Utricularia gibba HOM05D004546 ORTHO05D005419 7.1e-31 139.4 332 31.6
VMungo0251G0767 Vigna mungo HOM05D004546 ORTHO05D005419 1.3e-29 135.2 470 28.7
Lsat_1_v5_gn_8_80961 Lactuca sativa HOM05D004546 ORTHO05D005419 3.0e-29 134.0 224 34.8
TPR.G38758 Trifolium pratense HOM05D004546 ORTHO05D005419 8.2e-27 125.9 309 30.1
TPR.G31804 Trifolium pratense HOM05D004546 ORTHO05D005419 2.5e-23 114.4 203 37.9
Oeu027800.1 Olea europaea HOM05D004546 ORTHO05D005419 7.4e-20 102.8 166 37.3
Eucgr.L03482 Eucalyptus grandis HOM05D004546 ORTHO05D005419 6.3e-19 99.8 199 30.7
AagrBONN_evm.TU.Sc2ySwM_117.2656 Anthoceros agrestis HOM05D004546 ORTHO05D005419 1.5e-17 95.1 261 28.4
TPR.G37878 Trifolium pratense HOM05D004546 ORTHO05D005419 4.2e-15 87.0 154 31.8
COL.COLO4_13071 Corchorus olitorius HOM05D004546 ORTHO05D005419 9.4e-15 85.9 204 30.9
FAN03G2280 Fragaria x ananassa HOM05D004546 ORTHO05D005419 6.1e-14 83.2 252 25.8
Rhsim09G0048900 Rhododendron simsii HOM05D004546 ORTHO05D005419 2.3e-13 81.3 324 24.7
C05p50930 Brassica napus HOM05D004546 ORTHO05D005419 4.3e-12 77.0 210 28.6
C05p50920 Brassica napus HOM05D004546 ORTHO05D005419 1.3e-11 75.5 154 30.5
Mapoly0004s0096 Marchantia polymorpha HOM05D004546 ORTHO05D005419 5.3e-10 70.1 212 26.9
TPR.G18400 Trifolium pratense HOM05D004546 ORTHO05D005419 1.2e-09 68.9 67 53.7
PSO210G1504 Papaver somniferum HOM05D004546 ORTHO05D005419 2.5e-07 61.2 152 29.6
Atru.chr4.610 Acer truncatum HOM05D004546 ORTHO05D005419 5.5e-07 60.1 207 25.1
CAN.G1882.3 Capsicum annuum HOM05D004546 ORTHO05D005419 7.2e-07 59.7 82 41.5
Rhsim09G0049000 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.2e-06 58.9 72 38.9
RhsimUnG0234900 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.2e-06 58.9 84 35.7
PRCOL_00002550 Prasinoderma coloniale HOM05D004546 ORTHO05D005419 2.1e-06 58.2 117 30.8
TPR.G7268 Trifolium pratense HOM05D004546 ORTHO05D005419 2.7e-06 57.8 74 43.2
MCO07G624 Micromonas commoda HOM05D004546 ORTHO05D005419 7.9e-06 56.2 138 27.5


User provided reference genes

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