Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 1.5e-50 202.6 109 100.0
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 1.7e-41 172.6 103 87.4
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 9.4e-40 166.8 102 81.4
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 6.7e-38 160.6 103 77.7
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 2.7e-31 138.7 94 72.3
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 4.0e-30 134.8 94 72.3
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 6.8e-30 134.0 103 66.0
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 1.2e-29 133.3 103 67.0
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 1.2e-29 133.3 94 68.1
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 2.0e-29 132.5 94 68.1
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 2.6e-29 132.1 94 70.2
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 2.6e-29 132.1 103 66.0
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 2.6e-29 132.1 94 68.1
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 2.6e-29 132.1 94 70.2
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 3.4e-29 131.7 94 70.2
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 4.4e-29 131.3 94 67.0
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 5.7e-29 131.0 94 68.1
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 5.7e-29 131.0 94 70.2
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 5.7e-29 131.0 94 68.1
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 7.5e-29 130.6 94 71.3
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.3e-28 129.8 89 70.8
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 1.3e-28 129.8 92 71.7
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 1.3e-28 129.8 93 69.9
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 1.3e-28 129.8 93 69.9
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 1.3e-28 129.8 94 70.2
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 1.7e-28 129.4 94 66.0
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 1.7e-28 129.4 94 66.0
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 1.7e-28 129.4 94 66.0
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 1.7e-28 129.4 94 66.0
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 1.7e-28 129.4 92 71.7
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 1.7e-28 129.4 94 68.1
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 1.7e-28 129.4 92 71.7
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 2.2e-28 129.0 94 69.1
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 2.8e-28 128.6 94 67.0
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 3.7e-28 128.3 94 67.0
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 3.7e-28 128.3 92 70.7
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 4.8e-28 127.9 89 71.9
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 4.8e-28 127.9 94 66.0
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 6.3e-28 127.5 93 67.7
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 6.3e-28 127.5 94 68.1
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 8.3e-28 127.1 94 68.1
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 8.3e-28 127.1 93 67.7
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 1.1e-27 126.7 92 70.7
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 1.1e-27 126.7 94 68.1
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 1.1e-27 126.7 94 63.8
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 1.4e-27 126.3 93 68.8
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 1.4e-27 126.3 93 66.7
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 1.8e-27 125.9 93 67.7
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 1.8e-27 125.9 94 67.0
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 1.8e-27 125.9 94 67.0
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 1.8e-27 125.9 94 67.0
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 2.4e-27 125.6 93 66.7
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 2.4e-27 125.6 94 63.8
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 3.1e-27 125.2 94 66.0
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 4.1e-27 124.8 94 62.8
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 4.1e-27 124.8 94 62.8
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 4.1e-27 124.8 93 63.4
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 4.1e-27 124.8 94 67.0
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 4.1e-27 124.8 94 62.8
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 4.1e-27 124.8 93 67.7
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 5.4e-27 124.4 94 68.1
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 7.0e-27 124.0 93 67.7
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 7.0e-27 124.0 94 67.0
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 7.0e-27 124.0 94 64.9
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 9.1e-27 123.6 94 61.7
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 9.1e-27 123.6 103 65.0
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 9.1e-27 123.6 94 67.0
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 1.2e-26 123.2 94 66.0
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 1.2e-26 123.2 93 65.6
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 1.6e-26 122.9 93 64.5
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 1.6e-26 122.9 94 66.0
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 1.6e-26 122.9 94 66.0
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 2.0e-26 122.5 94 61.7
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 2.0e-26 122.5 94 61.7
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 2.0e-26 122.5 94 66.0
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 2.0e-26 122.5 103 65.0
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 2.7e-26 122.1 94 61.7
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 2.7e-26 122.1 93 64.5
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 2.7e-26 122.1 93 64.5
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 2.7e-26 122.1 93 64.5
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 2.7e-26 122.1 93 64.5
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 3.5e-26 121.7 94 60.6
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 3.5e-26 121.7 94 60.6
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 3.5e-26 121.7 94 60.6
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 3.5e-26 121.7 65 87.7
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 4.5e-26 121.3 94 61.7
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 4.5e-26 121.3 103 64.1
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 4.5e-26 121.3 103 64.1
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 5.9e-26 120.9 94 59.6
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 5.9e-26 120.9 94 59.6
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 5.9e-26 120.9 94 60.6
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 7.7e-26 120.6 94 61.7
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 7.7e-26 120.6 93 64.5
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 7.7e-26 120.6 94 64.9
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 7.7e-26 120.6 94 64.9
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 1.0e-25 120.2 103 62.1
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 1.0e-25 120.2 94 64.9
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 1.0e-25 120.2 103 63.1
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.7e-25 119.4 94 58.5
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 1.7e-25 119.4 94 63.8
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 2.3e-25 119.0 94 61.7
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 2.3e-25 119.0 94 62.8
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 2.3e-25 119.0 94 64.9
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 2.9e-25 118.6 94 64.9
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 6.5e-25 117.5 103 61.2
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 2.5e-24 115.5 93 61.3
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 4.2e-24 114.8 94 62.8
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 7.2e-24 114.0 93 60.2
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 2.1e-23 112.5 87 60.9
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 6.1e-23 110.9 119 49.6
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 1.8e-22 109.4 93 57.0
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 3.0e-22 108.6 93 58.1
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 3.0e-22 108.6 80 67.5
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 4.0e-22 108.2 94 59.6
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 6.8e-22 107.5 92 59.8
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 1.2e-21 106.7 93 57.0
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 4.4e-21 104.8 94 54.3
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 4.4e-21 104.8 94 54.3
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 6.3e-20 100.9 93 52.7
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 1.4e-19 99.8 71 69.0
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 2.0e-18 95.9 67 68.7
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 2.7e-18 95.5 65 69.2
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 3.5e-18 95.1 94 48.9
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 3.5e-18 95.1 64 70.3
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.0e-17 93.6 92 53.3
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 1.0e-17 93.6 59 74.6
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 2.3e-17 92.4 92 52.2
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 2.9e-17 92.0 92 53.3
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 2.5e-16 89.0 69 66.7
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 2.8e-15 85.5 57 71.9
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 4.7e-15 84.7 89 48.3
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 6.1e-15 84.3 89 52.8
Zm00001eb170420 Zea mays HOM05D004309 ORTHO05D026220 3.0e-14 82.0 60 66.7
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 5.2e-14 81.3 64 65.6
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 1.2e-13 80.1 62 62.9
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 5.8e-13 77.8 67 56.7
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 3.7e-12 75.1 58 63.8
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 4.9e-12 74.7 63 57.1
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 5.4e-11 71.2 46 71.7
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 1.1e-06 57.0 86 38.4


User provided reference genes

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