Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0410700 Oryza sativa ssp. japonica HOM05D006979 ORTHO05D008857 2.9e-163 578.6 309 100.0
Zm00001eb019720 Zea mays HOM05D006979 ORTHO05D008857 3.2e-93 345.9 214 83.6
Ciclev10026147m.g Citrus clementina HOM05D006979 ORTHO05D008857 9.3e-93 344.4 265 66.0
TAR383G0452 Trochodendron aralioides HOM05D006979 ORTHO05D008857 1.6e-92 343.6 251 70.1
GSVIVG01016774001 Vitis vinifera HOM05D006979 ORTHO05D008857 1.6e-92 343.6 249 67.5
vmacro15023 Vaccinium macrocarpon HOM05D006979 ORTHO05D008857 3.5e-92 342.4 267 64.4
CSS0018635 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 4.6e-92 342.0 263 65.4
Rhsim08G0237900 Rhododendron simsii HOM05D006979 ORTHO05D008857 6.1e-92 341.7 251 65.7
CSS0026622 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 7.9e-92 341.3 265 65.7
Actinidia32181 Actinidia chinensis HOM05D006979 ORTHO05D008857 2.3e-91 339.7 263 65.8
Dinv04035 Davidia involucrata HOM05D006979 ORTHO05D008857 5.1e-91 338.6 257 65.4
SGA_v2.0_scaffold4G02061 Striga asiatica HOM05D006979 ORTHO05D008857 6.7e-91 338.2 253 67.2
Potri.003G063800 Populus trichocarpa HOM05D006979 ORTHO05D008857 7.4e-90 334.7 260 64.6
Atru.chr1.3953 Acer truncatum HOM05D006979 ORTHO05D008857 8.2e-89 331.3 254 66.1
Nitab4.5_0000189g0250 Nicotiana tabacum HOM05D006979 ORTHO05D008857 1.8e-88 330.1 251 66.1
FvH4_6g34590 Fragaria vesca HOM05D006979 ORTHO05D008857 3.1e-88 329.3 247 64.8
FAN09G4734 Fragaria x ananassa HOM05D006979 ORTHO05D008857 3.1e-88 329.3 247 64.8
RcHm_v2.0_Chr2g0145111 Rosa chinensis HOM05D006979 ORTHO05D008857 4.1e-88 328.9 248 65.3
MD09G1184500 Malus domestica HOM05D006979 ORTHO05D008857 5.3e-88 328.6 253 65.6
Manes.11G021300 Manihot esculenta HOM05D006979 ORTHO05D008857 9.0e-88 327.8 257 64.6
Cpa.g.sc25.110 Carica papaya HOM05D006979 ORTHO05D008857 1.2e-87 327.4 249 65.5
Migut.D00941 Erythranthe guttata HOM05D006979 ORTHO05D008857 1.5e-87 327.0 253 64.8
CAN.G1368.7 Capsicum annuum HOM05D006979 ORTHO05D008857 3.4e-87 325.9 251 65.7
PGSC0003DMG400011606 Solanum tuberosum HOM05D006979 ORTHO05D008857 4.5e-87 325.5 251 64.9
Duzib235G1224 Durio zibethinus HOM05D006979 ORTHO05D008857 1.3e-86 323.9 260 62.7
AUR62001490 Chenopodium quinoa HOM05D006979 ORTHO05D008857 1.7e-86 323.6 246 65.0
Gohir.D05G142800 Gossypium hirsutum HOM05D006979 ORTHO05D008857 1.7e-86 323.6 261 63.2
Gorai.009G146700 Gossypium raimondii HOM05D006979 ORTHO05D008857 1.7e-86 323.6 261 63.2
Nitab4.5_0001199g0130 Nicotiana tabacum HOM05D006979 ORTHO05D008857 2.2e-86 323.2 251 64.1
CiPaw.01G219600 Carya illinoinensis HOM05D006979 ORTHO05D008857 3.8e-86 322.4 239 66.5
AUR62009880 Chenopodium quinoa HOM05D006979 ORTHO05D008857 3.8e-86 322.4 248 66.5
Prupe.3G042700 Prunus persica HOM05D006979 ORTHO05D008857 6.5e-86 321.6 266 60.9
COL.COLO4_30769 Corchorus olitorius HOM05D006979 ORTHO05D008857 1.4e-85 320.5 260 63.5
Sabra03G0037400 Salix brachista HOM05D006979 ORTHO05D008857 2.5e-85 319.7 266 62.0
Sopen12g023760 Solanum pennellii HOM05D006979 ORTHO05D008857 2.5e-85 319.7 251 64.1
Oeu015481.1 Olea europaea HOM05D006979 ORTHO05D008857 5.5e-85 318.5 250 62.4
Solyc12g049280.3 Solanum lycopersicum HOM05D006979 ORTHO05D008857 5.5e-85 318.5 243 65.4
SalBow7G2243 Salvia bowleyana HOM05D006979 ORTHO05D008857 7.2e-85 318.2 254 63.4
Cfa003539 Carpinus fangiana HOM05D006979 ORTHO05D008857 2.1e-84 316.6 252 62.7
TWI31G0112 Tripterygium wilfordii HOM05D006979 ORTHO05D008857 2.1e-84 316.6 279 59.9
Thecc.06G118900 Theobroma cacao HOM05D006979 ORTHO05D008857 2.7e-84 316.2 258 62.0
CANSAT56G2284 Cannabis sativa HOM05D006979 ORTHO05D008857 3.6e-84 315.8 255 64.7
CDE05G0714 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 6.1e-84 315.1 267 59.6
Lj3g0022239 Lotus japonicus HOM05D006979 ORTHO05D008857 1.4e-83 313.9 258 63.2
Lj9A522T69 Lonicera japonica HOM05D006979 ORTHO05D008857 2.3e-83 313.2 240 65.8
Glyma.07G036000 Glycine max HOM05D006979 ORTHO05D008857 3.0e-83 312.8 269 62.1
Glyma.16G005300 Glycine max HOM05D006979 ORTHO05D008857 3.0e-83 312.8 257 62.6
QL05p008051 Quercus lobata HOM05D006979 ORTHO05D008857 3.0e-83 312.8 312 54.2
Phvul.010G133500 Phaseolus vulgaris HOM05D006979 ORTHO05D008857 3.9e-83 312.4 257 61.5
MBI19_g11849_MAGBIO Magnolia biondii HOM05D006979 ORTHO05D008857 6.7e-83 311.6 278 58.6
Hund05741 Selenicereus undatus HOM05D006979 ORTHO05D008857 4.3e-82 308.9 307 53.4
FAN05G0457 Fragaria x ananassa HOM05D006979 ORTHO05D008857 7.4e-82 308.1 235 64.7
ECA234G1570 Erigeron canadensis HOM05D006979 ORTHO05D008857 3.7e-81 305.8 258 60.9
Peaxi162Scf00177g00513 Petunia axillaris HOM05D006979 ORTHO05D008857 3.7e-81 305.8 235 65.5
ATR0598G212 Amborella trichopoda HOM05D006979 ORTHO05D008857 2.4e-80 303.1 251 61.4
Aqoxy5G02291 Aquilegia oxysepala HOM05D006979 ORTHO05D008857 2.4e-80 303.1 291 53.6
Sed0019772 Sechium edule HOM05D006979 ORTHO05D008857 3.1e-80 302.8 261 59.8
VMungo0331G0985 Vigna mungo HOM05D006979 ORTHO05D008857 4.1e-80 302.4 260 60.8
Eucgr.F03173 Eucalyptus grandis HOM05D006979 ORTHO05D008857 6.9e-80 301.6 275 56.0
Sp5g27700 Schrenkiella parvula HOM05D006979 ORTHO05D008857 9.1e-80 301.2 257 59.5
PSO210G4684 Papaver somniferum HOM05D006979 ORTHO05D008857 1.2e-79 300.8 255 61.6
TPR.G16442 Trifolium pratense HOM05D006979 ORTHO05D008857 1.2e-79 300.8 250 61.2
Lsat_1_v5_gn_5_135940 Lactuca sativa HOM05D006979 ORTHO05D008857 2.0e-79 300.1 262 59.2
BcaNung07150 Brassica carinata HOM05D006979 ORTHO05D008857 3.4e-79 299.3 257 58.4
PSO210G5065 Papaver somniferum HOM05D006979 ORTHO05D008857 3.4e-79 299.3 255 60.8
Lalb_Chr04g0263421 Lupinus albus HOM05D006979 ORTHO05D008857 4.5e-79 298.9 265 59.2
Medtr8g019510 Medicago truncatula HOM05D006979 ORTHO05D008857 4.5e-79 298.9 272 58.5
Atru.chr1.3954 Acer truncatum HOM05D006979 ORTHO05D008857 5.9e-79 298.5 234 64.5
THA.LOC104813956 Tarenaya hassleriana HOM05D006979 ORTHO05D008857 5.9e-79 298.5 267 57.7
CsaV3_7G034520 Cucumis sativus L. HOM05D006979 ORTHO05D008857 1.3e-78 297.4 263 59.7
Carub.0002s1948 Capsella rubella HOM05D006979 ORTHO05D008857 1.7e-78 297.0 257 58.8
AL2G32310 Arabidopsis lyrata HOM05D006979 ORTHO05D008857 4.2e-77 292.4 257 57.6
BcaC08g46707 Brassica carinata HOM05D006979 ORTHO05D008857 1.6e-76 290.4 257 57.2
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 2.1e-76 290.0 252 59.9
C06p46960 Brassica napus HOM05D006979 ORTHO05D008857 2.7e-76 289.7 257 56.8
BolC6t39737H Brassica oleracea HOM05D006979 ORTHO05D008857 2.7e-76 289.7 257 56.8
Sc08g0005680 Simmondsia chinensis HOM05D006979 ORTHO05D008857 1.8e-75 287.0 252 57.5
Cc04_g01400 Coffea canephora HOM05D006979 ORTHO05D008857 3.9e-75 285.8 236 63.1
A07p38800 Brassica napus HOM05D006979 ORTHO05D008857 5.1e-75 285.4 279 53.8
BraA07t31434Z Brassica rapa HOM05D006979 ORTHO05D008857 5.1e-75 285.4 279 53.8
Thhalv10018914m.g Eutrema salsugineum HOM05D006979 ORTHO05D008857 2.0e-74 283.5 273 54.6
PGR119G0938 Punica granatum HOM05D006979 ORTHO05D008857 1.3e-73 280.8 259 56.0
Aa31LG4G3010 Aethionema arabicum HOM05D006979 ORTHO05D008857 1.7e-73 280.4 260 56.2
Gohir.A05G140600 Gossypium hirsutum HOM05D006979 ORTHO05D008857 1.3e-70 270.8 261 56.3
ClCG09G000940 Citrullus lanatus HOM05D006979 ORTHO05D008857 6.5e-70 268.5 293 51.5
Haze_16022 Corylus avellana HOM05D006979 ORTHO05D008857 5.5e-69 265.4 251 55.4
Pp3c11_2100 Physcomitrium patens HOM05D006979 ORTHO05D008857 1.2e-68 264.2 263 52.1
Nn6g35601 Nelumbo nucifera HOM05D006979 ORTHO05D008857 2.9e-62 243.0 251 53.4
EL10Ac7g16405 Beta vulgaris HOM05D006979 ORTHO05D008857 6.1e-60 235.3 301 47.8
arahy.Tifrunner.gnm1.ann1.4E7AR5 Arachis hypogaea HOM05D006979 ORTHO05D008857 1.0e-59 234.6 246 52.8
AT1G72640 Arabidopsis thaliana HOM05D006979 ORTHO05D008857 1.8e-59 233.8 212 55.2
arahy.Tifrunner.gnm1.ann1.IV001U Arachis hypogaea HOM05D006979 ORTHO05D008857 8.8e-59 231.5 246 52.4
Psat4g183680 Pisum sativum HOM05D006979 ORTHO05D008857 1.8e-56 223.8 200 57.5
Ca_05018_v3 Cicer arietinum L. HOM05D006979 ORTHO05D008857 3.1e-56 223.0 189 58.7
Hma1.2p1_0496F.1_g166210 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 7.0e-56 221.9 171 65.5
CARHR065560 Cardamine hirsuta HOM05D006979 ORTHO05D008857 5.0e-54 215.7 182 59.9
SMO117G0249 Selaginella moellendorffii HOM05D006979 ORTHO05D008857 1.6e-52 210.7 266 43.6
AagrBONN_evm.TU.Sc2ySwM_362.1497 Anthoceros agrestis HOM05D006979 ORTHO05D008857 4.7e-52 209.1 201 54.7
Hma1.2p1_0496F.1_g166200 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 1.2e-47 194.5 209 52.6
FAN14G3231 Fragaria x ananassa HOM05D006979 ORTHO05D008857 1.6e-44 184.1 149 57.7
MELO3C024358.2 Cucumis melo HOM05D006979 ORTHO05D008857 1.5e-42 177.6 162 59.3
Ah.08g216750 Amaranthus hybridus HOM05D006979 ORTHO05D008857 2.6e-34 150.2 140 59.3
SEGI_25115 Sequoiadendron giganteum HOM05D006979 ORTHO05D008857 9.8e-34 148.3 131 55.0
Mapoly0030s0153 Marchantia polymorpha HOM05D006979 ORTHO05D008857 1.1e-32 144.8 147 51.7
Cre02.g095133 Chlamydomonas reinhardtii HOM05D006979 ORTHO05D008857 9.9e-18 95.1 266 29.7
CDE05G2075 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 2.9e-17 93.6 181 34.8
MCO12G160 Micromonas commoda HOM05D006979 ORTHO05D008857 3.8e-17 93.2 269 30.1
PRCOL_00001479 Prasinoderma coloniale HOM05D006979 ORTHO05D008857 2.6e-10 70.5 125 34.4
Medtr8g019490 Medicago truncatula HOM05D006979 ORTHO05D008857 4.4e-10 69.7 94 41.5
RcHm_v2.0_Chr6g0307231 Rosa chinensis HOM05D006979 ORTHO05D008857 4.4e-10 69.7 53 60.4
RcHm_v2.0_Chr3g0497381 Rosa chinensis HOM05D006979 ORTHO05D008857 4.9e-09 66.2 53 56.6
Lsat_1_v5_gn_1_77640 Lactuca sativa HOM05D006655 ORTHO05D007986 3.2e-08 63.5 315 24.8
SEGI_01007 Sequoiadendron giganteum HOM05D006655 ORTHO05D007986 1.6e-07 61.2 265 25.7
AUR62000173 Chenopodium quinoa HOM05D006655 ORTHO05D007986 1.7e-06 57.8 249 26.1
CiPaw.09G194500 Carya illinoinensis HOM05D003730 ORTHO05D004458 2.3e-06 57.4 252 25.0
ECA248G0748 Erigeron canadensis HOM05D006655 ORTHO05D007986 2.3e-06 57.4 239 25.1
TAR636G1862 Trochodendron aralioides HOM05D003730 ORTHO05D004458 3.0e-06 57.0 247 24.7
BolC7t46320H Brassica oleracea HOM05D006655 ORTHO05D007986 5.1e-06 56.2 282 23.4
EL10Ac4g10174 Beta vulgaris HOM05D006655 ORTHO05D007986 6.6e-06 55.8 264 23.1
Mapoly0030s0154 Marchantia polymorpha HOM05D006979 ORTHO05D008857 6.6e-06 55.8 46 50.0
arahy.Tifrunner.gnm1.ann1.760I9C Arachis hypogaea HOM05D006655 ORTHO05D007986 8.7e-06 55.5 239 24.3
Ciclev10015876m.g Citrus clementina HOM05D006655 ORTHO05D007986 8.7e-06 55.5 239 24.7
MD03G1169200 Malus domestica HOM05D006655 ORTHO05D007986 8.7e-06 55.5 264 23.9
THA.LOC104816930 Tarenaya hassleriana HOM05D006655 ORTHO05D007986 8.7e-06 55.5 264 24.6


User provided reference genes

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