Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0400901 Oryza sativa ssp. japonica HOM05D033343 ORTHO05D019275 9.6e-226 786.6 415 100.0
Zm00001eb342700 Zea mays HOM05D033343 ORTHO05D002107 6.7e-62 242.3 444 41.0
Os05g0548600 Oryza sativa ssp. japonica HOM05D033343 ORTHO05D002107 2.0e-61 240.7 429 42.2
Zm00001eb429390 Zea mays HOM05D000229 ORTHO05D000182 6.6e-17 92.8 72 73.6
CAN.G764.12 Capsicum annuum HOM05D002453 ORTHO05D002107 2.2e-12 77.8 347 24.8
HPP92_000749 Vanilla planifolia HOM05D002453 ORTHO05D003966 3.5e-10 70.5 187 35.3
Phvul.009G215700 Phaseolus vulgaris HOM05D007173 ORTHO05D009151 6.0e-10 69.7 275 25.1
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 1.7e-09 68.2 136 30.9
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 3.9e-09 67.0 275 24.0
HPP92_021332 Vanilla planifolia HOM05D007212 ORTHO05D000003 1.5e-08 65.1 157 29.9
Glyma.07G188700 Glycine max HOM05D007101 ORTHO05D008632 5.6e-08 63.2 199 28.6
Thhalv10011454m.g Eutrema salsugineum HOM05D002453 ORTHO05D008746 7.3e-08 62.8 239 25.1
BraA08t32216Z Brassica rapa HOM05D002453 ORTHO05D008746 9.5e-08 62.4 239 25.9
Solyc02g085650.4 Solanum lycopersicum HOM05D001985 ORTHO05D000761 1.2e-07 62.0 232 25.4
A08p01630 Brassica napus HOM05D002453 ORTHO05D008746 2.1e-07 61.2 239 25.5
MBI08_g25568_MAGBIO Magnolia biondii HOM05D048945 ORTHO05D019275 2.1e-07 61.2 73 42.5
GSVIVG01012774001 Vitis vinifera HOM05D007390 ORTHO05D009114 2.1e-07 61.2 124 31.5
GSVIVG01025536001 Vitis vinifera HOM05D000855 ORTHO05D008530 2.1e-07 61.2 177 26.0
Medtr8g103480 Medicago truncatula HOM05D003689 ORTHO05D003950 2.8e-07 60.8 119 29.4
Medtr8g463610 Medicago truncatula HOM05D006503 ORTHO05D008116 2.8e-07 60.8 113 29.2
unitig_26.g10218 Utricularia gibba HOM05D003039 ORTHO05D008410 3.6e-07 60.5 105 32.4
EL10Ac7g15952 Beta vulgaris HOM05D000970 ORTHO05D000788 4.7e-07 60.1 187 31.0
Lj3P1030T40 Lonicera japonica HOM05D005622 ORTHO05D002854 4.7e-07 60.1 174 24.7
Lalb_Chr02g0149121 Lupinus albus HOM05D007536 ORTHO05D009390 4.7e-07 60.1 118 30.5
Peaxi162Scf00406g00240 Petunia axillaris HOM05D002453 ORTHO05D002107 4.7e-07 60.1 192 28.6
AL5G43620 Arabidopsis lyrata HOM05D003039 ORTHO05D008410 6.2e-07 59.7 134 31.3
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 6.2e-07 59.7 122 30.3
Aa31LG3G2070 Aethionema arabicum HOM05D000855 ORTHO05D008530 8.1e-07 59.3 177 24.3
BcaC01g01383 Brassica carinata HOM05D002453 ORTHO05D008746 8.1e-07 59.3 239 25.5
C03p91440 Brassica napus HOM05D002453 ORTHO05D008746 8.1e-07 59.3 239 25.5
BolC3t21463H Brassica oleracea HOM05D002753 ORTHO05D003097 8.1e-07 59.3 239 25.5
Phvul.007G163500 Phaseolus vulgaris HOM05D000855 ORTHO05D008530 8.1e-07 59.3 122 30.3
RcHm_v2.0_Chr5g0062521 Rosa chinensis HOM05D004271 ORTHO05D006011 8.1e-07 59.3 195 27.7
Ca_17333_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 1.1e-06 58.9 109 32.1
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 1.1e-06 58.9 122 31.1
PGR142G0989 Punica granatum HOM05D000855 ORTHO05D008530 1.1e-06 58.9 122 31.1
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 1.1e-06 58.9 176 26.1
Glyma.18G093100 Glycine max HOM05D006569 ORTHO05D007515 1.8e-06 58.2 110 29.1
Cfa019553 Carpinus fangiana HOM05D002453 ORTHO05D008746 2.3e-06 57.8 161 32.3
Duzib128G0705 Durio zibethinus HOM05D007173 ORTHO05D009151 2.3e-06 57.8 135 28.1
Psat6g067680 Pisum sativum HOM05D000855 ORTHO05D008530 2.3e-06 57.8 122 30.3
Aqoxy4G03187 Aquilegia oxysepala HOM05D000855 ORTHO05D008530 3.1e-06 57.4 177 26.0
Ca_11448_v3 Cicer arietinum L. HOM05D000855 ORTHO05D008530 3.1e-06 57.4 212 26.4
FAN02G3427 Fragaria x ananassa HOM05D000855 ORTHO05D008530 3.1e-06 57.4 122 29.5
Glyma.18G128532 Glycine max HOM05D007063 ORTHO05D008822 3.1e-06 57.4 109 30.3
CARHR084060 Cardamine hirsuta HOM05D000855 ORTHO05D008530 4.0e-06 57.0 122 30.3
FAN09G2418 Fragaria x ananassa HOM05D000855 ORTHO05D008530 4.0e-06 57.0 122 29.5
FAN14G2211 Fragaria x ananassa HOM05D000855 ORTHO05D008530 4.0e-06 57.0 122 29.5
Lj5g0021887 Lotus japonicus HOM05D000855 ORTHO05D008530 4.0e-06 57.0 122 31.1
Prupe.6G241600 Prunus persica HOM05D000855 ORTHO05D008530 4.0e-06 57.0 122 30.3
Eucgr.K03209 Eucalyptus grandis HOM05D000855 ORTHO05D008530 5.2e-06 56.6 122 30.3
FAN11G0418 Fragaria x ananassa HOM05D003757 ORTHO05D000090 5.2e-06 56.6 124 23.4
FAN16G1729 Fragaria x ananassa HOM05D006918 ORTHO05D008525 5.2e-06 56.6 113 32.7
SEGI_16454 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 5.2e-06 56.6 144 28.5
Haze_09312 Corylus avellana HOM05D002453 ORTHO05D008746 6.8e-06 56.2 161 32.3
FvH4_3g42580 Fragaria vesca HOM05D000002 ORTHO05D000001 6.8e-06 56.2 124 23.4
Nn2g12986 Nelumbo nucifera HOM05D000855 ORTHO05D008530 6.8e-06 56.2 122 28.7
Nitab4.5_0003968g0010 Nicotiana tabacum HOM05D006707 ORTHO05D008243 6.8e-06 56.2 134 27.6
PSO339G3775 Papaver somniferum HOM05D000855 ORTHO05D008530 6.8e-06 56.2 228 24.1
QL02p053824 Quercus lobata HOM05D006569 ORTHO05D007515 6.8e-06 56.2 127 28.3
Nitab4.5_0003782g0120 Nicotiana tabacum HOM05D002453 ORTHO05D002107 8.9e-06 55.8 182 28.6
SalBow7G4426 Salvia bowleyana HOM05D007639 ORTHO05D009509 8.9e-06 55.8 185 23.2
Sed0017496 Sechium edule HOM05D000855 ORTHO05D008530 8.9e-06 55.8 177 24.3
HPP92_024516 Vanilla planifolia HOM05D044601 ORTHO05D009117 8.9e-06 55.8 156 26.3


User provided reference genes

Program Settings