Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0395900 Oryza sativa ssp. japonica HOM05D005490 ORTHO05D006606 2.3e-232 808.9 532 100.0
Nn5g30300 Nelumbo nucifera HOM05D005490 ORTHO05D006606 3.3e-154 549.3 449 71.3
Actinidia03792 Actinidia chinensis HOM05D005490 ORTHO05D006606 4.8e-153 545.4 449 70.8
CiPaw.01G018200 Carya illinoinensis HOM05D005490 ORTHO05D006606 1.1e-152 544.3 450 69.8
Prupe.7G133300 Prunus persica HOM05D005490 ORTHO05D006606 1.1e-152 544.3 450 69.1
Thecc.01G056300 Theobroma cacao HOM05D005490 ORTHO05D006606 2.4e-152 543.1 451 71.2
Gohir.D11G199100 Gossypium hirsutum HOM05D005490 ORTHO05D006606 5.3e-152 542.0 450 68.4
QL06p041379 Quercus lobata HOM05D005490 ORTHO05D006606 9.0e-152 541.2 484 67.1
Gorai.007G213300 Gossypium raimondii HOM05D005490 ORTHO05D006606 1.5e-151 540.4 449 68.4
RcHm_v2.0_Chr2g0105671 Rosa chinensis HOM05D005490 ORTHO05D006606 2.9e-150 536.2 450 69.8
Gohir.A11G192400 Gossypium hirsutum HOM05D005490 ORTHO05D006606 3.8e-150 535.8 449 67.7
Duzib187G0068 Durio zibethinus HOM05D005490 ORTHO05D006606 1.9e-149 533.5 462 68.6
TWI09G1398 Tripterygium wilfordii HOM05D005490 ORTHO05D006606 2.4e-149 533.1 450 69.6
Lj2g0003149 Lotus japonicus HOM05D005490 ORTHO05D006606 3.2e-149 532.7 451 68.7
Manes.12G106800 Manihot esculenta HOM05D005490 ORTHO05D006606 3.2e-149 532.7 451 69.8
CANSAT01G1717 Cannabis sativa HOM05D005490 ORTHO05D006606 1.2e-148 530.8 451 67.0
Sc03g0001580 Simmondsia chinensis HOM05D005490 ORTHO05D006606 1.6e-148 530.4 448 70.5
Solyc02g090850.3 Solanum lycopersicum HOM05D005490 ORTHO05D006606 2.7e-148 529.6 449 66.6
PGSC0003DMG400004042 Solanum tuberosum HOM05D005490 ORTHO05D006606 4.6e-148 528.9 449 66.6
Hund16323 Selenicereus undatus HOM05D005490 ORTHO05D006606 6.0e-148 528.5 447 69.6
Glyma.01G186000 Glycine max HOM05D005490 ORTHO05D006606 2.3e-147 526.6 452 68.4
Lalb_Chr05g0213291 Lupinus albus HOM05D005490 ORTHO05D006606 3.9e-147 525.8 453 68.4
GSVIVG01022130001 Vitis vinifera HOM05D005490 ORTHO05D006606 8.7e-147 524.6 450 70.2
Ciclev10025320m.g Citrus clementina HOM05D005490 ORTHO05D006606 1.1e-146 524.2 450 70.4
COL.COLO4_11415 Corchorus olitorius HOM05D005490 ORTHO05D006606 1.5e-146 523.9 447 68.5
Potri.007G044100 Populus trichocarpa HOM05D005490 ORTHO05D006606 1.5e-146 523.9 451 69.8
PSO170G3823 Papaver somniferum HOM05D005490 ORTHO05D006606 1.9e-146 523.5 450 68.2
Ca_24770_v3 Cicer arietinum L. HOM05D005490 ORTHO05D006606 4.3e-146 522.3 450 69.8
Dinv29986 Davidia involucrata HOM05D005490 ORTHO05D006606 5.6e-146 521.9 452 67.5
PSO210G6251 Papaver somniferum HOM05D005490 ORTHO05D006606 5.6e-146 521.9 450 68.2
Phvul.002G018900 Phaseolus vulgaris HOM05D005490 ORTHO05D006606 5.6e-146 521.9 451 69.2
VMungo1215G3252 Vigna mungo HOM05D005490 ORTHO05D006606 7.3e-146 521.5 452 68.8
Hma1.2p1_0461F.1_g157810 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 9.6e-146 521.2 449 65.9
Cc07_g05990 Coffea canephora HOM05D005490 ORTHO05D006606 4.8e-145 518.8 449 69.3
Cfa004023 Carpinus fangiana HOM05D005490 ORTHO05D006606 1.1e-144 517.7 450 68.9
A01p01850 Brassica napus HOM05D005490 ORTHO05D006606 2.4e-144 516.5 451 68.5
BraA01t00174Z Brassica rapa HOM05D005490 ORTHO05D006606 2.4e-144 516.5 451 68.5
Lj7A69T47 Lonicera japonica HOM05D005490 ORTHO05D006606 1.5e-143 513.8 485 63.3
DCAR_025733 Daucus carota HOM05D005490 ORTHO05D006606 2.0e-143 513.5 474 63.5
arahy.Tifrunner.gnm1.ann1.JF37M9 Arachis hypogaea HOM05D005490 ORTHO05D006606 3.4e-143 512.7 448 68.3
CAN.G660.7 Capsicum annuum HOM05D005490 ORTHO05D006606 3.4e-143 512.7 449 65.3
THA.LOC104804216 Tarenaya hassleriana HOM05D005490 ORTHO05D006606 3.4e-143 512.7 452 68.4
Medtr5g017430 Medicago truncatula HOM05D005490 ORTHO05D006606 4.5e-143 512.3 451 68.5
Oeu031525.2 Olea europaea HOM05D005490 ORTHO05D006606 1.7e-142 510.4 450 68.9
CsaV3_2G016660 Cucumis sativus L. HOM05D005490 ORTHO05D006606 2.2e-142 510.0 451 68.1
TPR.G30705 Trifolium pratense HOM05D005490 ORTHO05D006606 3.8e-142 509.2 449 67.9
FAN28G1226 Fragaria x ananassa HOM05D005490 ORTHO05D006606 8.4e-142 508.1 464 66.2
Sp7g34780 Schrenkiella parvula HOM05D005490 ORTHO05D006606 1.4e-141 507.3 451 68.3
FAN19G0012 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.9e-141 506.9 464 65.9
AT4G36980 Arabidopsis thaliana HOM05D005490 ORTHO05D006606 1.2e-140 504.2 450 68.4
C01p01990 Brassica napus HOM05D005490 ORTHO05D006606 2.1e-140 503.4 451 66.7
Glyma.11G056000 Glycine max HOM05D005490 ORTHO05D006606 2.7e-140 503.1 452 67.9
Nitab4.5_0002016g0110 Nicotiana tabacum HOM05D005490 ORTHO05D006606 3.5e-140 502.7 449 64.8
Aa31LG6G13990 Aethionema arabicum HOM05D005490 ORTHO05D006606 4.6e-140 502.3 465 64.5
AL7G13750 Arabidopsis lyrata HOM05D005490 ORTHO05D006606 6.0e-140 501.9 450 67.8
Thhalv10025018m.g Eutrema salsugineum HOM05D005490 ORTHO05D006606 6.0e-140 501.9 450 68.4
Psat2g166360 Pisum sativum HOM05D005490 ORTHO05D006606 1.0e-139 501.1 451 67.2
BcaNung02520 Brassica carinata HOM05D005490 ORTHO05D006606 1.3e-139 500.7 450 67.8
Lsat_1_v5_gn_2_84101 Lactuca sativa HOM05D005490 ORTHO05D006606 1.8e-139 500.4 475 63.6
Sabra07G0038800 Salix brachista HOM05D005490 ORTHO05D006606 1.8e-139 500.4 502 61.4
Gohir.A02G157300 Gossypium hirsutum HOM05D005490 ORTHO05D006606 2.3e-139 500.0 450 67.1
HanXRQChr14g0442791 Helianthus annuus HOM05D005490 ORTHO05D006606 1.1e-138 497.7 449 66.4
arahy.Tifrunner.gnm1.ann1.5GG3L5 Arachis hypogaea HOM05D005490 ORTHO05D006606 1.5e-138 497.3 478 63.6
EL10Ac6g15745 Beta vulgaris HOM05D005490 ORTHO05D006606 1.5e-138 497.3 464 64.2
Carub.0007s0317 Capsella rubella HOM05D005490 ORTHO05D006606 9.6e-138 494.6 453 66.7
ECA238G0711 Erigeron canadensis HOM05D005490 ORTHO05D006606 1.6e-137 493.8 449 66.4
Gorai.003G025100 Gossypium raimondii HOM05D005490 ORTHO05D006606 1.6e-137 493.8 449 66.6
HPP92_004114 Vanilla planifolia HOM05D005490 ORTHO05D006606 1.6e-137 493.8 446 63.0
BolC1t00193H Brassica oleracea HOM05D005490 ORTHO05D006606 3.7e-137 492.7 462 64.9
Sed0007368 Sechium edule HOM05D005490 ORTHO05D006606 1.5e-135 487.3 452 65.5
SGA_v2.0_scaffold15G07303 Striga asiatica HOM05D005490 ORTHO05D006606 2.6e-135 486.5 450 64.4
Oeu062437.1 Olea europaea HOM05D005490 ORTHO05D006606 3.4e-135 486.1 450 64.0
Gohir.D03G023600 Gossypium hirsutum HOM05D005490 ORTHO05D006606 1.3e-134 484.2 449 65.7
CDE08G0045 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 8.4e-134 481.5 460 64.8
Aqoxy5G01229 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 2.5e-133 479.9 376 71.3
CARHR245520 Cardamine hirsuta HOM05D005490 ORTHO05D006606 6.0e-132 475.3 447 64.0
Migut.H00433 Erythranthe guttata HOM05D005490 ORTHO05D006606 1.9e-130 470.3 452 63.9
CDE06G1923 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 7.4e-130 468.4 450 65.1
MD02G1172000 Malus domestica HOM05D005490 ORTHO05D006606 4.8e-129 465.7 366 71.0
TAR381G1106 Trochodendron aralioides HOM05D005490 ORTHO05D006606 1.1e-128 464.5 376 71.0
ClCG02G012530 Citrullus lanatus HOM05D005490 ORTHO05D006606 1.4e-128 464.2 449 63.9
CSS0049924 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 3.1e-128 463.0 452 62.4
ATR1102G026 Amborella trichopoda HOM05D005490 ORTHO05D006606 5.3e-128 462.2 452 62.4
AUR62001928 Chenopodium quinoa HOM05D005490 ORTHO05D006606 3.8e-126 456.1 477 56.8
Potri.005G138200 Populus trichocarpa HOM05D005490 ORTHO05D006606 2.5e-122 443.4 367 70.3
FAN26G0668 Fragaria x ananassa HOM05D005490 ORTHO05D006606 9.7e-122 441.4 390 66.4
FAN23G2111 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.0e-115 421.4 393 64.4
Ah.03g145080 Amaranthus hybridus HOM05D005490 ORTHO05D006606 6.5e-110 402.1 382 64.7
AUR62003882 Chenopodium quinoa HOM05D005490 ORTHO05D006606 3.6e-108 396.4 475 52.0
Peaxi162Scf00450g00420 Petunia axillaris HOM05D005490 ORTHO05D006606 3.7e-105 386.3 449 52.6
Mapoly0012s0107 Marchantia polymorpha HOM05D005490 ORTHO05D006606 2.0e-103 380.6 467 52.9
Rhsim08G0100400 Rhododendron simsii HOM05D005490 ORTHO05D006606 2.2e-97 360.5 449 55.2
Sabra05G0112300 Salix brachista HOM05D005490 ORTHO05D006606 1.9e-93 347.4 471 52.2
unitig_899.g14662 Utricularia gibba HOM05D005490 ORTHO05D006606 1.0e-91 341.7 379 59.9
Pp3c7_5520 Physcomitrium patens HOM05D005490 ORTHO05D006606 4.0e-91 339.7 475 49.9
MD15G1284300 Malus domestica HOM05D005490 ORTHO05D006606 5.0e-86 322.8 320 62.2
Nitab4.5_0002440g0010 Nicotiana tabacum HOM05D005490 ORTHO05D006606 1.4e-83 314.7 451 45.2
Zm00001eb019290 Zea mays HOM05D005490 ORTHO05D006606 6.8e-83 312.4 235 78.3
Eucgr.I00926 Eucalyptus grandis HOM05D005490 ORTHO05D006606 2.2e-81 307.4 309 61.5
Atru.chr3.327 Acer truncatum HOM05D005490 ORTHO05D006606 2.8e-81 307.0 308 62.3
Pp3c11_20900 Physcomitrium patens HOM05D005490 ORTHO05D006606 3.7e-81 306.6 463 47.1
HPP92_004074 Vanilla planifolia HOM05D005490 ORTHO05D006606 4.1e-80 303.1 321 57.9
Hma1.2p1_0461F.1_g157800 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 1.6e-76 291.2 315 60.0
FvH4_1g16060 Fragaria vesca HOM05D005490 ORTHO05D006606 3.6e-76 290.0 309 61.8
vmacro17955 Vaccinium macrocarpon HOM05D005490 ORTHO05D006606 3.4e-74 283.5 339 57.2
MELO3C020875.2 Cucumis melo HOM05D005490 ORTHO05D006606 1.7e-70 271.2 310 60.0
Dinv39848 Davidia involucrata HOM05D005490 ORTHO05D006606 2.0e-66 257.7 237 66.2
Sopen02g035470 Solanum pennellii HOM05D005490 ORTHO05D006606 2.7e-63 247.3 232 62.5
SEGI_00791 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 2.1e-60 237.7 154 74.0
SMO356G0652 Selaginella moellendorffii HOM05D005490 ORTHO05D006606 7.5e-58 229.2 247 53.8
SEGI_41077 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 1.3e-57 228.4 300 51.7
Cpa.g.sc55.148 Carica papaya HOM05D005490 ORTHO05D006606 2.7e-55 220.7 128 85.2
Atru.chr3.328 Acer truncatum HOM05D005490 ORTHO05D006606 1.0e-54 218.8 128 82.8
MD15G1284200 Malus domestica HOM05D005490 ORTHO05D006606 2.2e-49 201.1 128 80.5
Actinidia16483 Actinidia chinensis HOM05D005490 ORTHO05D006606 2.4e-48 197.6 292 51.7
Haze_15401 Corylus avellana HOM05D005490 ORTHO05D006606 9.6e-45 185.7 198 62.6
Haze_15403 Corylus avellana HOM05D005490 ORTHO05D006606 4.7e-44 183.3 198 62.6
Actinidia36493 Actinidia chinensis HOM05D005490 ORTHO05D006606 2.0e-42 177.9 352 40.3
CBR_g38045 Chara braunii HOM05D005490 ORTHO05D000004 2.9e-41 174.1 435 40.0
AagrBONN_evm.TU.Sc2ySwM_344.4468 Anthoceros agrestis HOM05D005490 ORTHO05D006606 7.1e-40 169.5 470 34.5
Actinidia16484 Actinidia chinensis HOM05D005490 ORTHO05D006606 3.4e-34 150.6 84 82.1
VMungo1309G0325 Vigna mungo HOM05D005490 ORTHO05D006606 6.0e-31 139.8 162 54.9
VMungo0720G1861 Vigna mungo HOM05D005490 ORTHO05D006606 2.9e-25 120.9 145 51.7
SHI08459 Sapria himalayana HOM05D005490 ORTHO05D006606 8.1e-20 102.8 66 74.2
FAN22G1581 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.8e-19 101.7 72 68.1
FAN17G2271 Fragaria x ananassa HOM05D005490 ORTHO05D006606 5.8e-18 96.7 66 71.2
VMungo0251G2361 Vigna mungo HOM05D007793 ORTHO05D010104 3.5e-15 87.4 90 54.4
FAN17G1267 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.8e-14 85.1 64 68.8
VMungo1309G1585 Vigna mungo HOM05D005490 ORTHO05D006606 3.0e-14 84.3 83 57.8
CSS0031445 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 4.3e-13 80.5 75 66.7
MD02G1172100 Malus domestica HOM05D005490 ORTHO05D006606 1.6e-12 78.6 76 65.8
Aqoxy5G01228 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 5.3e-11 73.6 77 63.6
CDE08G1038 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 5.9e-10 70.1 376 30.6
Actinidia36494 Actinidia chinensis HOM05D005490 ORTHO05D006606 1.0e-09 69.3 75 60.0
Cre12.g498350 Chlamydomonas reinhardtii HOM05D005490 ORTHO05D006606 3.8e-09 67.4 387 27.6
Atru.chr10.1611 Acer truncatum HOM05D005490 ORTHO05D006606 8.5e-09 66.2 50 64.0


User provided reference genes

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