Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0387300 Oryza sativa ssp. japonica HOM05D001711 ORTHO05D002211 2.2e-80 303.1 285 100.0
Zm00001eb392380 Zea mays HOM05D001711 ORTHO05D002211 6.3e-11 72.4 169 48.5
Sed0007140 Sechium edule HOM05D001711 ORTHO05D002211 2.7e-09 67.0 58 65.5
PSO210G7699 Papaver somniferum HOM05D001711 ORTHO05D002211 4.5e-09 66.2 70 52.9
MELO3C007765.2 Cucumis melo HOM05D001711 ORTHO05D002211 5.9e-09 65.9 57 63.2
CsaV3_6G045520 Cucumis sativus L. HOM05D001711 ORTHO05D002211 5.9e-09 65.9 57 63.2
PSO447G0020 Papaver somniferum HOM05D001711 ORTHO05D002211 5.9e-09 65.9 64 56.2
Eucgr.H04807 Eucalyptus grandis HOM05D001711 ORTHO05D002211 1.0e-08 65.1 71 53.5
FvH4_1g21110 Fragaria vesca HOM05D001711 ORTHO05D002211 1.0e-08 65.1 69 55.1
FAN19G2532 Fragaria x ananassa HOM05D001711 ORTHO05D002211 1.0e-08 65.1 69 55.1
FAN26G0006 Fragaria x ananassa HOM05D001711 ORTHO05D002211 1.0e-08 65.1 69 55.1
FAN28G1714 Fragaria x ananassa HOM05D001711 ORTHO05D002211 1.0e-08 65.1 69 55.1
ClCG01G018860 Citrullus lanatus HOM05D001711 ORTHO05D002211 1.3e-08 64.7 59 62.7
ATR0564G011 Amborella trichopoda HOM05D001711 ORTHO05D002211 2.2e-08 63.9 60 58.3
Lj6g0028020 Lotus japonicus HOM05D001711 ORTHO05D002211 2.2e-08 63.9 52 59.6
Sc03g0002120 Simmondsia chinensis HOM05D001711 ORTHO05D002211 6.5e-08 62.4 71 50.7
CANSAT01G1277 Cannabis sativa HOM05D001711 ORTHO05D002211 1.1e-07 61.6 76 47.4
Hma1.2p1_0047F.1_g027920 Hydrangea macrophylla HOM05D001711 ORTHO05D002211 1.1e-07 61.6 66 53.0
Sed0012743 Sechium edule HOM05D001711 ORTHO05D002211 1.1e-07 61.6 54 61.1
Aqoxy6G01489 Aquilegia oxysepala HOM05D001711 ORTHO05D002211 1.9e-07 60.8 70 52.9
TWI53G1699 Tripterygium wilfordii HOM05D001711 ORTHO05D002211 1.9e-07 60.8 64 51.6
TWI77G0088 Tripterygium wilfordii HOM05D001711 ORTHO05D002211 1.9e-07 60.8 54 61.1
CiPaw.03G140800 Carya illinoinensis HOM05D001711 ORTHO05D002211 2.5e-07 60.5 59 57.6
CiPaw.04G098500 Carya illinoinensis HOM05D001711 ORTHO05D002211 2.5e-07 60.5 59 57.6
Gohir.D12G096700 Gossypium hirsutum HOM05D001711 ORTHO05D002211 2.5e-07 60.5 62 53.2
Gorai.008G104800 Gossypium raimondii HOM05D001711 ORTHO05D002211 2.5e-07 60.5 62 53.2
TAR628G0933 Trochodendron aralioides HOM05D001711 ORTHO05D002211 2.5e-07 60.5 59 59.3
FAN23G0347 Fragaria x ananassa HOM05D001711 ORTHO05D002211 3.2e-07 60.1 68 54.4
Os08g0409500 Oryza sativa ssp. japonica HOM05D001711 ORTHO05D002211 3.2e-07 60.1 76 48.7
Rhsim08G0009900 Rhododendron simsii HOM05D001711 ORTHO05D002211 3.2e-07 60.1 72 51.4
Gohir.A12G093700 Gossypium hirsutum HOM05D001711 ORTHO05D002211 4.2e-07 59.7 62 53.2
Gohir.D10G103300 Gossypium hirsutum HOM05D001711 ORTHO05D002211 4.2e-07 59.7 64 51.6
Gorai.011G113000 Gossypium raimondii HOM05D001711 ORTHO05D002211 4.2e-07 59.7 64 51.6
TAR376G0352 Trochodendron aralioides HOM05D001711 ORTHO05D002211 4.2e-07 59.7 59 55.9
Oeu056601.2 Olea europaea HOM05D001711 ORTHO05D002211 5.5e-07 59.3 68 50.0
Potri.007G091600 Populus trichocarpa HOM05D001711 ORTHO05D002211 5.5e-07 59.3 62 54.8
Rhsim10G0160200 Rhododendron simsii HOM05D001711 ORTHO05D002211 5.5e-07 59.3 59 55.9
Sabra07G0075100 Salix brachista HOM05D001711 ORTHO05D002211 5.5e-07 59.3 62 54.8
SEGI_20878 Sequoiadendron giganteum HOM05D001711 ORTHO05D002211 5.5e-07 59.3 66 56.1
Cpa.g.sc568.1 Carica papaya HOM05D001711 ORTHO05D002211 7.2e-07 58.9 68 52.9
FvH4_5g37690 Fragaria vesca HOM05D001711 ORTHO05D002211 7.2e-07 58.9 61 59.0
Manes.12G136100 Manihot esculenta HOM05D001711 ORTHO05D002211 7.2e-07 58.9 64 51.6
Zm00001eb178900 Zea mays HOM05D001711 ORTHO05D002211 7.2e-07 58.9 70 52.9
PGR102G0271 Punica granatum HOM05D001711 ORTHO05D002211 9.4e-07 58.5 52 61.5
QL06p049857 Quercus lobata HOM05D001711 ORTHO05D002211 9.4e-07 58.5 57 56.1
Haze_24948 Corylus avellana HOM05D001711 ORTHO05D002211 1.2e-06 58.2 59 55.9
Duzib187G0378 Durio zibethinus HOM05D001711 ORTHO05D002211 1.2e-06 58.2 70 51.4
Lalb_Chr11g0075341 Lupinus albus HOM05D001711 ORTHO05D002211 1.2e-06 58.2 71 50.7
MD08G1181100 Malus domestica HOM05D001711 ORTHO05D002211 1.2e-06 58.2 64 56.2
Medtr3g087390 Medicago truncatula HOM05D001711 ORTHO05D002211 1.2e-06 58.2 64 53.1
MSTRG.2564 Avicennia marina HOM05D001711 ORTHO05D002211 1.6e-06 57.8 66 51.5
Lsat_1_v5_gn_5_43481 Lactuca sativa HOM05D001711 ORTHO05D002211 1.6e-06 57.8 77 46.8
Manes.13G093500 Manihot esculenta HOM05D001711 ORTHO05D002211 1.6e-06 57.8 59 54.2
Zm00001eb311250 Zea mays HOM05D001711 ORTHO05D002211 1.6e-06 57.8 62 56.5
Haze_22252 Corylus avellana HOM05D001711 ORTHO05D002211 2.1e-06 57.4 68 48.5
MD01G1027700 Malus domestica HOM05D001711 ORTHO05D002211 2.1e-06 57.4 82 45.1
Nn1g05328 Nelumbo nucifera HOM05D001711 ORTHO05D002211 2.1e-06 57.4 58 58.6
Nn5g29085 Nelumbo nucifera HOM05D001711 ORTHO05D002211 2.1e-06 57.4 57 57.9
Zm00001eb098700 Zea mays HOM05D001711 ORTHO05D002211 2.1e-06 57.4 71 49.3
Ca_16535_v3 Cicer arietinum L. HOM05D001711 ORTHO05D002211 2.7e-06 57.0 66 51.5
Cc00_g16190 Coffea canephora HOM05D001711 ORTHO05D002211 2.7e-06 57.0 68 52.9
Dinv16294 Davidia involucrata HOM05D001711 ORTHO05D002211 2.7e-06 57.0 56 57.1
Eucgr.F00302 Eucalyptus grandis HOM05D001711 ORTHO05D002211 2.7e-06 57.0 58 56.9
Phvul.008G172700 Phaseolus vulgaris HOM05D001711 ORTHO05D002211 2.7e-06 57.0 67 52.2
VMungo0647G0712 Vigna mungo HOM05D001711 ORTHO05D002211 2.7e-06 57.0 67 52.2
MSTRG.23339 Avicennia marina HOM05D001711 ORTHO05D002211 3.6e-06 56.6 70 50.0
Phvul.002G254700 Phaseolus vulgaris HOM05D001711 ORTHO05D002211 3.6e-06 56.6 81 43.2
Potri.002G094900 Populus trichocarpa HOM05D001711 ORTHO05D002211 3.6e-06 56.6 67 53.7
Thecc.01G103300 Theobroma cacao HOM05D001711 ORTHO05D002211 3.6e-06 56.6 70 50.0
CAN.G1423.3 Capsicum annuum HOM05D001711 ORTHO05D002211 4.7e-06 56.2 84 45.2
CAN.G71.17 Capsicum annuum HOM05D001711 ORTHO05D002211 4.7e-06 56.2 84 45.2
Dinv21917 Davidia involucrata HOM05D001711 ORTHO05D002211 4.7e-06 56.2 64 50.0
MBI02_g08736_MAGBIO Magnolia biondii HOM05D001711 ORTHO05D002211 4.7e-06 56.2 57 56.1
Oeu002177.1 Olea europaea HOM05D001711 ORTHO05D002211 4.7e-06 56.2 63 52.4
Os09g0370500 Oryza sativa ssp. japonica HOM05D001711 ORTHO05D002211 4.7e-06 56.2 81 45.7
AUR62003785 Chenopodium quinoa HOM05D001711 ORTHO05D002211 6.1e-06 55.8 60 56.7
FAN08G3322 Fragaria x ananassa HOM05D001711 ORTHO05D002211 6.1e-06 55.8 59 59.3
Sed0019024 Sechium edule HOM05D001711 ORTHO05D002211 6.1e-06 55.8 79 46.8
SGA_v2.0_scaffold47G17774 Striga asiatica HOM05D001711 ORTHO05D002211 6.1e-06 55.8 67 52.2
TAR625G1352 Trochodendron aralioides HOM05D001711 ORTHO05D002211 6.1e-06 55.8 64 50.0
Gohir.A11G200700 Gossypium hirsutum HOM05D001711 ORTHO05D002211 8.0e-06 55.5 57 54.4
Oeu054843.1 Olea europaea HOM05D001711 ORTHO05D002211 8.0e-06 55.5 68 48.5


User provided reference genes

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