Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 9.8e-264 912.9 460 100.0
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 3.0e-172 609.0 460 69.1
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 1.2e-136 490.7 449 55.9
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 1.4e-132 477.2 450 54.2
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 5.2e-132 475.3 447 54.1
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 4.9e-130 468.8 447 54.1
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 4.1e-129 465.7 504 50.6
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 4.1e-129 465.7 447 54.4
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 4.6e-128 462.2 447 53.2
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 6.0e-128 461.8 447 54.4
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.7e-127 460.3 447 52.8
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 1.7e-127 460.3 447 53.2
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 3.9e-127 459.1 447 53.7
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 5.1e-127 458.8 447 52.1
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 2.5e-126 456.4 445 53.5
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 3.3e-126 456.1 447 52.8
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 5.6e-126 455.3 468 50.9
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 7.3e-126 454.9 447 52.8
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 9.5e-126 454.5 447 52.6
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 2.1e-125 453.4 447 52.1
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 2.8e-125 453.0 447 53.0
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 6.2e-125 451.8 440 53.4
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 8.1e-125 451.4 447 52.8
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 8.1e-125 451.4 447 52.1
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 6.8e-124 448.4 447 52.1
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 1.5e-123 447.2 454 51.5
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 2.6e-123 446.4 447 52.6
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 4.4e-123 445.7 453 52.8
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 5.8e-123 445.3 447 51.2
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 9.9e-123 444.5 441 52.4
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 1.7e-122 443.7 447 51.2
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 1.1e-121 441.0 440 52.5
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 4.1e-121 439.1 448 51.8
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 5.4e-121 438.7 446 52.0
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 2.1e-120 436.8 444 50.7
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 2.7e-120 436.4 438 50.7
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 6.0e-120 435.3 447 49.9
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 7.8e-120 434.9 446 50.7
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 1.0e-119 434.5 447 50.3
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 1.3e-119 434.1 452 51.1
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 1.7e-119 433.7 447 52.3
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 1.7e-119 433.7 452 50.9
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 2.3e-119 433.3 447 49.4
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 3.0e-119 433.0 447 48.8
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 3.9e-119 432.6 444 49.5
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 5.1e-119 432.2 447 50.6
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 6.6e-119 431.8 437 51.5
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 5.6e-118 428.7 449 50.3
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 7.3e-118 428.3 452 50.2
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 7.3e-118 428.3 446 50.9
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 2.1e-117 426.8 443 50.3
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 2.8e-117 426.4 445 50.1
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 4.7e-117 425.6 447 48.1
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 4.7e-117 425.6 452 48.0
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 6.2e-117 425.2 446 50.0
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 1.8e-116 423.7 447 48.5
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 1.8e-116 423.7 447 48.5
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 1.8e-116 423.7 448 50.0
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 4.0e-116 422.5 460 48.0
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 4.0e-116 422.5 447 49.9
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 5.2e-116 422.2 447 48.3
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 6.9e-116 421.8 447 48.3
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 6.9e-116 421.8 449 50.1
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 8.9e-116 421.4 447 49.4
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 8.9e-116 421.4 445 50.3
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 1.2e-115 421.0 449 49.9
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 1.2e-115 421.0 443 49.7
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 1.2e-115 421.0 445 50.3
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 2.0e-115 420.2 473 47.8
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 2.0e-115 420.2 445 50.1
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 7.6e-115 418.3 444 48.0
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 1.3e-114 417.5 441 49.0
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 1.3e-114 417.5 445 49.2
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 2.9e-114 416.4 478 47.9
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 2.9e-114 416.4 445 49.9
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 3.8e-114 416.0 449 47.0
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 3.8e-114 416.0 436 50.2
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 3.8e-114 416.0 453 49.9
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.1e-113 414.5 445 49.7
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 7.1e-113 411.8 445 50.3
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 7.1e-113 411.8 445 48.8
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 1.6e-112 410.6 449 47.2
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.6e-112 410.6 445 49.4
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 2.1e-112 410.2 447 46.5
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 1.0e-111 407.9 436 49.8
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 1.7e-111 407.1 447 47.2
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 3.0e-111 406.4 351 57.8
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 5.1e-111 405.6 418 50.0
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 6.2e-109 398.7 446 48.2
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 2.9e-106 389.8 407 50.4
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 7.9e-104 381.7 644 36.8
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 7.4e-102 375.2 408 50.5
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 1.3e-101 374.4 464 46.6
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 2.8e-101 373.2 448 44.9
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 8.4e-98 361.7 377 48.8
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 5.1e-95 352.4 299 61.2
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 2.1e-93 347.1 465 42.8
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 2.4e-92 343.6 444 42.8
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 7.1e-89 332.0 379 47.2
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.6e-85 320.9 207 73.4
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 2.0e-83 313.9 449 41.2
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 1.1e-78 298.1 455 38.7
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 5.7e-78 295.8 453 38.0
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 7.7e-75 285.4 450 37.8
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 7.0e-60 235.7 211 58.3
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 3.5e-59 233.4 331 39.6
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 1.1e-57 228.4 237 48.1
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 9.1e-52 208.8 211 54.0
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 1.2e-48 198.4 177 58.2
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 1.0e-47 195.3 280 39.6
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 5.7e-38 162.9 294 31.6
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 8.3e-37 159.1 130 57.7
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 2.4e-28 131.0 103 57.3
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 2.4e-28 131.0 123 52.0
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 8.6e-26 122.5 125 53.6
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 2.5e-25 120.9 138 42.0
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 8.3e-21 105.9 134 42.5
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 7.0e-20 102.8 85 61.2
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 9.2e-20 102.4 369 27.4
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.5e-17 95.1 211 34.6
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 1.2e-16 92.0 138 39.9
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 6.2e-16 89.7 69 60.9
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 3.1e-15 87.4 332 25.3
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 1.3e-13 82.0 99 39.4
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 2.1e-11 74.7 100 44.0
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.1e-09 68.9 75 45.3
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 9.5e-09 65.9 58 46.6
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 3.6e-08 63.9 108 37.0
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 4.7e-08 63.5 48 56.2
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 1.4e-07 62.0 98 36.7
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 1.5e-06 58.5 249 24.9


User provided reference genes

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