Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 7.9e-208 726.9 364 100.0
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 3.1e-127 459.1 354 68.1
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.7e-85 320.5 207 73.4
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 6.1e-83 312.0 314 50.6
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 2.3e-82 310.1 316 49.7
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 8.7e-82 308.1 313 49.2
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 1.7e-77 293.9 312 47.1
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.1e-76 291.2 292 46.6
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 1.1e-76 291.2 312 46.8
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 2.7e-75 286.6 311 46.9
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 3.6e-75 286.2 305 44.6
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 5.1e-74 282.3 311 46.3
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 3.3e-73 279.6 291 47.4
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 4.3e-73 279.3 292 47.6
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 5.7e-73 278.9 296 46.3
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 7.4e-73 278.5 316 43.7
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 1.7e-72 277.3 305 44.3
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 4.8e-72 275.8 292 48.3
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 4.8e-72 275.8 274 48.2
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 6.3e-72 275.4 301 46.2
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 2.4e-71 273.5 296 44.6
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 3.1e-71 273.1 293 45.7
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 5.3e-71 272.3 307 44.0
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 1.5e-70 270.8 317 43.8
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 2.0e-70 270.4 306 44.8
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 3.4e-70 269.6 320 43.4
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 4.5e-70 269.2 307 45.9
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 4.5e-70 269.2 312 43.3
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 5.9e-70 268.9 292 45.5
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 5.9e-70 268.9 300 45.0
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 7.7e-70 268.5 309 44.3
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 7.7e-70 268.5 306 43.5
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 1.3e-69 267.7 307 45.9
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 2.2e-69 266.9 317 43.2
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 3.8e-69 266.2 320 42.5
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 5.0e-69 265.8 309 42.7
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 5.0e-69 265.8 291 45.4
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 5.0e-69 265.8 291 45.7
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 6.5e-69 265.4 319 42.9
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 6.5e-69 265.4 354 41.2
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 6.5e-69 265.4 300 43.3
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 8.5e-69 265.0 289 46.4
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 1.1e-68 264.6 290 45.5
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 2.5e-68 263.5 297 42.8
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 3.2e-68 263.1 343 42.9
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 4.2e-68 262.7 315 43.5
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 4.2e-68 262.7 291 44.7
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 5.5e-68 262.3 343 42.6
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 5.5e-68 262.3 291 44.3
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 7.2e-68 261.9 306 43.5
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 9.4e-68 261.5 266 46.6
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 2.1e-67 260.4 351 41.9
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 2.1e-67 260.4 296 43.9
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 2.1e-67 260.4 291 43.3
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 2.1e-67 260.4 291 45.0
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 2.7e-67 260.0 291 44.7
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 3.6e-67 259.6 290 45.9
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 3.6e-67 259.6 296 42.6
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 4.7e-67 259.2 312 43.3
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 7.9e-67 258.5 329 41.6
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 1.0e-66 258.1 303 44.6
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 1.8e-66 257.3 302 44.7
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 3.0e-66 256.5 292 43.2
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 3.9e-66 256.1 291 44.0
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 5.1e-66 255.8 302 44.0
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 8.8e-66 255.0 291 44.3
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 8.8e-66 255.0 293 44.7
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 1.1e-65 254.6 328 40.2
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 3.3e-65 253.1 272 44.9
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 4.4e-65 252.7 326 40.2
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 4.4e-65 252.7 294 42.9
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 4.4e-65 252.7 345 40.3
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 7.4e-65 251.9 303 43.9
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 1.3e-64 251.1 342 41.5
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 1.3e-64 251.1 347 42.1
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 1.3e-64 251.1 269 46.5
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 1.3e-64 251.1 272 42.6
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 1.7e-64 250.8 351 39.9
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 2.2e-64 250.4 293 42.7
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 3.7e-64 249.6 348 39.9
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 1.4e-63 247.7 341 40.8
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 1.4e-63 247.7 319 40.8
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 1.8e-63 247.3 312 40.7
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 3.1e-63 246.5 270 44.1
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 3.1e-63 246.5 302 42.7
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 9.1e-63 245.0 340 40.3
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 1.5e-62 244.2 264 45.1
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 1.5e-62 244.2 322 40.7
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 3.5e-62 243.0 272 44.1
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 7.7e-62 241.9 347 40.3
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 2.9e-61 240.0 272 43.8
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 6.5e-61 238.8 347 39.8
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 6.5e-61 238.8 272 43.8
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 4.7e-59 232.6 251 45.4
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 4.4e-57 226.1 271 42.4
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 9.7e-57 224.9 271 42.4
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 5.0e-53 212.6 350 35.7
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 8.5e-53 211.8 243 47.3
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 3.6e-51 206.5 269 39.0
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 1.3e-48 198.0 227 43.6
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.4e-47 194.5 220 45.0
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 2.0e-46 190.7 219 53.9
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 2.9e-45 186.8 311 35.4
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 2.2e-40 170.6 265 35.1
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.1e-36 158.3 175 45.1
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 1.4e-34 151.4 292 31.8
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 7.5e-33 145.6 107 54.2
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 1.1e-31 141.7 313 31.6
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 3.9e-29 133.3 258 29.8
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 1.5e-28 131.3 264 27.7
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 1.2e-27 128.3 302 28.5
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.1e-23 115.2 103 49.5
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 8.9e-18 95.5 57 71.9
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 3.0e-13 80.5 101 38.6
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 2.8e-11 73.9 60 53.3
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 8.1e-11 72.4 94 38.3
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 2.0e-09 67.8 105 37.1
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 7.6e-09 65.9 94 30.9
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 2.2e-08 64.3 112 38.4


User provided reference genes

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