Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 3.4e-254 881.3 501 100.0
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 4.7e-179 631.7 503 77.1
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 4.7e-179 631.7 503 77.1
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 2.0e-177 626.3 501 75.0
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.1e-82 311.6 548 42.0
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 1.3e-80 304.7 534 40.8
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 3.9e-80 303.1 540 45.0
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 5.6e-79 299.3 549 39.5
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 9.5e-79 298.5 514 44.6
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 8.1e-78 295.4 538 43.5
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 8.1e-78 295.4 533 42.8
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 1.4e-77 294.7 538 43.7
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 1.8e-77 294.3 543 42.0
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 1.8e-77 294.3 538 40.5
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 5.2e-77 292.7 542 40.0
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 5.2e-77 292.7 526 42.2
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 8.9e-77 292.0 520 43.3
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 1.5e-76 291.2 511 40.1
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 2.6e-76 290.4 542 41.5
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 7.6e-76 288.9 536 43.8
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 2.9e-75 287.0 542 43.4
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 3.7e-75 286.6 534 39.1
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 3.7e-75 286.6 519 42.4
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 4.9e-75 286.2 551 39.9
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 6.4e-75 285.8 531 40.7
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 8.3e-75 285.4 509 45.0
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 8.3e-75 285.4 534 43.1
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.4e-74 284.6 509 45.2
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 1.4e-74 284.6 540 44.6
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 1.9e-74 284.3 538 42.0
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 3.2e-74 283.5 535 38.3
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 4.1e-74 283.1 518 44.8
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 5.4e-74 282.7 523 44.2
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 7.1e-74 282.3 538 41.8
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 7.1e-74 282.3 510 43.3
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 1.6e-73 281.2 547 37.5
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 1.6e-73 281.2 517 41.2
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 2.1e-73 280.8 537 39.1
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 2.7e-73 280.4 524 42.6
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 3.5e-73 280.0 535 37.9
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 6.0e-73 279.3 540 41.9
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 1.3e-72 278.1 525 37.9
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 1.3e-72 278.1 533 40.0
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 1.3e-72 278.1 535 37.9
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 1.3e-72 278.1 553 41.2
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 1.3e-72 278.1 538 42.0
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 2.3e-72 277.3 532 40.6
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 3.9e-72 276.6 535 42.6
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 5.1e-72 276.2 529 43.7
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 5.1e-72 276.2 535 41.9
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 6.6e-72 275.8 553 38.3
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 1.9e-71 274.2 479 40.9
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 1.9e-71 274.2 535 41.3
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 4.3e-71 273.1 506 44.1
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 9.6e-71 271.9 511 38.9
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 2.1e-70 270.8 512 44.7
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 2.1e-70 270.8 539 41.4
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 2.1e-70 270.8 500 41.8
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 3.6e-70 270.0 520 43.1
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 8.1e-70 268.9 509 43.8
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 1.8e-69 267.7 532 38.0
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 3.1e-69 266.9 528 42.4
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 4.0e-69 266.5 532 38.0
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 4.0e-69 266.5 531 41.6
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 6.8e-69 265.8 531 39.5
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 1.5e-68 264.6 574 36.1
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 2.0e-68 264.2 528 42.4
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 5.8e-68 262.7 508 41.9
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 7.6e-68 262.3 522 38.1
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 9.9e-68 261.9 499 42.3
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 1.7e-67 261.2 501 40.7
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 1.7e-67 261.2 546 37.4
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 2.2e-67 260.8 529 39.5
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 2.9e-67 260.4 500 43.4
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.9e-67 260.4 528 40.0
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 8.4e-67 258.8 501 43.1
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 1.1e-66 258.5 500 42.2
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 1.4e-66 258.1 532 42.9
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 1.9e-66 257.7 554 39.0
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 3.2e-66 256.9 529 39.3
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 4.2e-66 256.5 530 44.0
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 4.2e-66 256.5 533 40.2
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 7.1e-66 255.8 533 40.5
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 9.3e-66 255.4 506 42.3
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 2.1e-65 254.2 498 41.8
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 2.1e-65 254.2 546 37.4
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 2.1e-65 254.2 607 37.1
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 4.6e-65 253.1 506 41.7
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 1.0e-64 251.9 513 38.4
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 1.3e-64 251.5 517 43.5
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 1.7e-64 251.1 512 41.4
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 1.7e-64 251.1 512 41.4
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 3.9e-64 250.0 507 37.3
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 6.6e-64 249.2 501 38.3
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 1.9e-63 247.7 468 41.5
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 2.5e-63 247.3 588 36.1
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 5.6e-63 246.1 562 34.5
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 7.3e-63 245.7 637 33.8
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 4.8e-62 243.0 506 40.7
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 6.2e-62 242.7 550 40.5
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 8.1e-62 242.3 489 37.0
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 1.1e-61 241.9 461 41.0
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 3.1e-61 240.4 507 40.4
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 2.0e-60 237.7 519 38.0
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 6.4e-59 232.6 454 40.7
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 1.9e-58 231.1 417 40.3
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 1.9e-58 231.1 443 41.1
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 7.1e-58 229.2 527 41.9
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 1.6e-57 228.0 515 41.4
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 2.3e-56 224.2 492 38.2
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.0e-56 223.8 523 41.7
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 3.0e-56 223.8 525 38.3
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.9e-56 223.4 523 41.7
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 5.1e-56 223.0 523 36.1
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 1.1e-55 221.9 543 38.7
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 1.9e-47 194.5 357 42.6
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 6.9e-45 186.0 459 35.1
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 1.0e-43 182.2 434 35.0
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 2.2e-43 181.0 218 52.3
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 8.4e-43 179.1 579 32.3
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 5.7e-39 166.4 397 41.3
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.1e-37 162.2 391 43.0
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 5.8e-36 156.4 287 39.7
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 1.0e-35 155.6 306 37.9
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 1.0e-32 145.6 522 30.5
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 3.0e-32 144.1 565 29.0
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 8.7e-32 142.5 442 32.6
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 3.3e-31 140.6 289 38.4
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 4.1e-29 133.7 503 32.4
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 9.4e-26 122.5 255 45.5
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 3.3e-23 114.0 126 50.8
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 9.7e-23 112.5 185 42.2
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 6.9e-21 106.3 187 49.2
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 7.7e-20 102.8 185 46.5
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 2.2e-19 101.3 213 36.6
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.5e-18 97.8 287 32.8
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 2.0e-15 88.2 428 27.6
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 1.5e-12 78.6 107 44.9
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 3.5e-12 77.4 203 33.0
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 5.0e-11 73.6 358 28.8
AagrBONN_evm.TU.Sc2ySwM_344.1880 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.5e-10 72.0 207 31.4
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 6.7e-08 63.2 92 42.4
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.6e-07 61.2 123 36.6
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 2.6e-07 61.2 130 36.2
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 3.3e-07 60.8 118 40.7
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 4.4e-07 60.5 172 34.9
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.3e-06 58.9 111 36.9


User provided reference genes

Program Settings