Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0342100 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.0e-72 276.9 173 100.0
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.7e-38 163.3 183 61.2
Zm00001eb016390 Zea mays HOM05D003565 ORTHO05D003943 3.1e-21 105.9 137 48.2
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 9.1e-21 104.4 143 49.7
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 4.5e-12 75.5 136 42.6
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 6.5e-11 71.6 114 45.6
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 1.9e-10 70.1 102 42.2
Os07g0674500 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 2.5e-10 69.7 131 39.7
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 3.2e-10 69.3 135 38.5
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 3.2e-10 69.3 99 42.4
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 9.4e-10 67.8 135 37.8
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 4.7e-09 65.5 165 34.5
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 4.7e-09 65.5 100 41.0
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 8.0e-09 64.7 100 40.0
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 8.0e-09 64.7 174 35.1
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.0e-08 64.3 100 40.0
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 1.0e-08 64.3 137 35.8
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 1.4e-08 63.9 142 33.1
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 1.8e-08 63.5 100 40.0
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 2.3e-08 63.2 137 35.0
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 5.2e-08 62.0 173 37.0
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 6.8e-08 61.6 135 35.6
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 6.8e-08 61.6 137 38.7
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 8.8e-08 61.2 140 37.1
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 1.2e-07 60.8 175 35.4
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 1.2e-07 60.8 174 34.5
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 1.5e-07 60.5 123 35.8
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 4.4e-07 58.9 99 43.4
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.4e-07 58.9 140 37.1
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 4.4e-07 58.9 177 35.0
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 5.7e-07 58.5 174 34.5
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 7.5e-07 58.2 99 37.4
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 7.5e-07 58.2 171 31.0
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 9.8e-07 57.8 100 42.0
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 1.3e-06 57.4 136 33.1
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 1.3e-06 57.4 133 39.1
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.7e-06 57.0 137 35.8
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 1.7e-06 57.0 174 34.5
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 1.7e-06 57.0 98 34.7
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 1.7e-06 57.0 98 34.7
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 2.2e-06 56.6 138 37.7
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 2.8e-06 56.2 102 39.2
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 2.8e-06 56.2 139 32.4
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 3.7e-06 55.8 100 41.0
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 3.7e-06 55.8 172 32.0
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 8.3e-06 54.7 180 34.4
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 8.3e-06 54.7 141 37.6
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 8.3e-06 54.7 127 34.6


User provided reference genes

Program Settings