Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0340700 Oryza sativa ssp. japonica HOM05D005806 ORTHO05D007119 4.3e-249 864.4 493 100.0
Zm00001eb016320 Zea mays HOM05D005806 ORTHO05D007119 6.0e-150 535.0 504 65.7
Aqoxy5G00792 Aquilegia oxysepala HOM05D005806 ORTHO05D007119 7.7e-81 305.4 529 43.3
Lsat_1_v5_gn_6_78121 Lactuca sativa HOM05D005806 ORTHO05D007119 2.2e-80 303.9 546 45.1
Nitab4.5_0012392g0010 Nicotiana tabacum HOM05D005806 ORTHO05D007119 3.8e-80 303.1 484 46.7
MD16G1163000 Malus domestica HOM05D005806 ORTHO05D007119 8.5e-80 302.0 531 43.1
Nitab4.5_0002215g0010 Nicotiana tabacum HOM05D005806 ORTHO05D007119 6.1e-78 295.8 536 45.0
CSS0028282 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 2.3e-77 293.9 536 42.0
Glyma.07G244900 Glycine max HOM05D005806 ORTHO05D007119 2.6e-76 290.4 450 45.8
Atru.chr4.2914 Acer truncatum HOM05D005806 ORTHO05D007119 3.3e-76 290.0 505 43.0
arahy.Tifrunner.gnm1.ann1.TZ6N57 Arachis hypogaea HOM05D005806 ORTHO05D007119 4.4e-76 289.7 467 44.5
DCAR_002485 Daucus carota HOM05D005806 ORTHO05D007119 4.4e-76 289.7 521 42.8
FAN12G2548 Fragaria x ananassa HOM05D005806 ORTHO05D007119 5.7e-76 289.3 530 42.5
Ah.13g074780 Amaranthus hybridus HOM05D005806 ORTHO05D007119 1.7e-75 287.7 482 43.2
Carub.0003s1647 Capsella rubella HOM05D005806 ORTHO05D007119 2.8e-75 287.0 539 40.3
FvH4_4g18770 Fragaria vesca HOM05D005806 ORTHO05D007119 3.7e-75 286.6 530 42.8
FAN12G3921 Fragaria x ananassa HOM05D005806 ORTHO05D007119 3.7e-75 286.6 530 42.8
SGA_v2.0_scaffold91G28032 Striga asiatica HOM05D005806 ORTHO05D007119 3.7e-75 286.6 533 42.0
Thecc.04G290100 Theobroma cacao HOM05D005806 ORTHO05D007119 3.7e-75 286.6 521 43.0
PGSC0003DMG400016813 Solanum tuberosum HOM05D005806 ORTHO05D007119 4.8e-75 286.2 473 44.8
FAN07G1609 Fragaria x ananassa HOM05D005806 ORTHO05D007119 1.1e-74 285.0 478 43.1
AUR62018055 Chenopodium quinoa HOM05D005806 ORTHO05D007119 1.4e-74 284.6 529 40.3
HanXRQChr03g0084151 Helianthus annuus HOM05D005806 ORTHO05D007119 5.3e-74 282.7 565 39.8
Sopen01g027600 Solanum pennellii HOM05D005806 ORTHO05D007119 5.3e-74 282.7 551 40.1
CARHR092010 Cardamine hirsuta HOM05D005806 ORTHO05D007119 2.6e-73 280.4 528 40.5
HPP92_002231 Vanilla planifolia HOM05D005806 ORTHO05D007119 3.5e-73 280.0 439 45.3
Duzib212G0552 Durio zibethinus HOM05D005806 ORTHO05D007119 4.5e-73 279.6 521 41.3
Solyc01g066050.3 Solanum lycopersicum HOM05D005806 ORTHO05D007119 4.5e-73 279.6 549 41.0
Hund20516 Selenicereus undatus HOM05D005806 ORTHO05D007119 5.9e-73 279.3 476 44.3
AT3G16760 Arabidopsis thaliana HOM05D005806 ORTHO05D007119 7.7e-73 278.9 520 41.7
FAN17G0801 Fragaria x ananassa HOM05D005806 ORTHO05D007119 1.3e-72 278.1 461 45.1
Duzib151G0580 Durio zibethinus HOM05D005806 ORTHO05D007119 2.2e-72 277.3 515 41.6
VMungo1215G2854 Vigna mungo HOM05D005806 ORTHO05D007119 2.2e-72 277.3 443 43.8
ClCG05G006280 Citrullus lanatus HOM05D005806 ORTHO05D007119 3.8e-72 276.6 520 40.4
Migut.N00070 Erythranthe guttata HOM05D005806 ORTHO05D007119 3.8e-72 276.6 430 45.6
TWI09G1342 Tripterygium wilfordii HOM05D005806 ORTHO05D007119 3.8e-72 276.6 524 42.2
TWI73G0620 Tripterygium wilfordii HOM05D005806 ORTHO05D007119 5.0e-72 276.2 460 44.3
EL10Ac3g06659 Beta vulgaris HOM05D005806 ORTHO05D007119 6.5e-72 275.8 494 41.3
Gorai.011G193400 Gossypium raimondii HOM05D005806 ORTHO05D007119 1.1e-71 275.0 548 42.3
BolC1t04724H Brassica oleracea HOM05D005806 ORTHO05D007119 2.5e-71 273.9 523 39.6
TAR365G0831 Trochodendron aralioides HOM05D005806 ORTHO05D007119 1.2e-70 271.6 532 40.2
ECA240G3979 Erigeron canadensis HOM05D005806 ORTHO05D007119 2.1e-70 270.8 427 48.5
Peaxi162Scf00065g01121 Petunia axillaris HOM05D005806 ORTHO05D007119 2.1e-70 270.8 530 43.6
C01p47550 Brassica napus HOM05D005806 ORTHO05D007119 2.7e-70 270.4 522 39.3
Medtr4g120360 Medicago truncatula HOM05D005806 ORTHO05D007119 8.0e-70 268.9 455 42.9
Nn4g25745 Nelumbo nucifera HOM05D005806 ORTHO05D007119 3.0e-69 266.9 528 40.9
Aa31LG8G3830 Aethionema arabicum HOM05D005806 ORTHO05D007119 2.0e-68 264.2 537 40.6
Dinv44345 Davidia involucrata HOM05D005806 ORTHO05D007119 2.6e-68 263.8 455 41.5
Ca_21476_v3 Cicer arietinum L. HOM05D005806 ORTHO05D007119 4.4e-68 263.1 528 39.8
Thhalv10020624m.g Eutrema salsugineum HOM05D005806 ORTHO05D007119 4.4e-68 263.1 514 41.4
TAR365G0056 Trochodendron aralioides HOM05D005806 ORTHO05D007119 4.4e-68 263.1 529 39.9
Sp3g15010 Schrenkiella parvula HOM05D005806 ORTHO05D007119 1.3e-67 261.5 540 39.4
TAR633G1904 Trochodendron aralioides HOM05D005806 ORTHO05D007119 8.2e-67 258.8 297 53.2
Cc03_g01460 Coffea canephora HOM05D005806 ORTHO05D007119 1.1e-66 258.5 530 39.6
Glyma.17G028900 Glycine max HOM05D005806 ORTHO05D007119 1.4e-66 258.1 449 46.3
Prupe.1G130400 Prunus persica HOM05D005806 ORTHO05D007119 1.4e-66 258.1 525 40.2
Lj3A825T23 Lonicera japonica HOM05D005806 ORTHO05D007119 2.0e-65 254.2 565 37.9
Lj4g0013254 Lotus japonicus HOM05D005806 ORTHO05D007119 2.0e-65 254.2 447 41.8
vmacro23238 Vaccinium macrocarpon HOM05D005806 ORTHO05D007119 1.0e-64 251.9 560 39.1
QL06p010760 Quercus lobata HOM05D005806 ORTHO05D007119 2.2e-64 250.8 474 40.5
Nn3g21558 Nelumbo nucifera HOM05D005806 ORTHO05D007119 8.5e-64 248.8 462 41.3
Sabra10G0005700 Salix brachista HOM05D005806 ORTHO05D007119 1.5e-63 248.1 507 38.3
CSS0038808 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 1.9e-63 247.7 494 39.1
CSS0004144 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 2.5e-63 247.3 494 39.1
BraA01t03813Z Brassica rapa HOM05D005806 ORTHO05D007119 3.2e-63 246.9 524 37.4
Ciclev10004804m.g Citrus clementina HOM05D005806 ORTHO05D007119 9.4e-63 245.4 540 37.8
Haze_01151 Corylus avellana HOM05D005806 ORTHO05D007119 9.4e-63 245.4 474 39.2
Eucgr.B01574 Eucalyptus grandis HOM05D005806 ORTHO05D007119 1.6e-62 244.6 467 41.8
Manes.15G010100 Manihot esculenta HOM05D005806 ORTHO05D007119 2.7e-62 243.8 517 37.3
PSO832G4515 Papaver somniferum HOM05D005806 ORTHO05D007119 4.7e-62 243.0 446 40.6
RcHm_v2.0_Chr4g0423561 Rosa chinensis HOM05D005806 ORTHO05D007119 6.1e-62 242.7 512 39.5
COL.COLO4_13808 Corchorus olitorius HOM05D005806 ORTHO05D007119 1.0e-61 241.9 538 37.9
GSVIVG01035100001 Vitis vinifera HOM05D005806 ORTHO05D007119 1.0e-61 241.9 510 40.0
CAN.G14.19 Capsicum annuum HOM05D005806 ORTHO05D007119 2.3e-61 240.7 513 40.0
PSO210G6439 Papaver somniferum HOM05D005806 ORTHO05D007119 5.2e-61 239.6 446 40.1
Potri.010G007000 Populus trichocarpa HOM05D005806 ORTHO05D007119 6.8e-61 239.2 507 38.3
Cpa.g.sc50.151 Carica papaya HOM05D005806 ORTHO05D007119 8.8e-61 238.8 526 37.1
arahy.Tifrunner.gnm1.ann1.T7VR84 Arachis hypogaea HOM05D005806 ORTHO05D007119 1.2e-60 238.4 304 49.0
Cfa015433 Carpinus fangiana HOM05D005806 ORTHO05D007119 1.2e-60 238.4 474 38.6
Manes.03G199200 Manihot esculenta HOM05D005806 ORTHO05D007119 1.2e-60 238.4 523 37.1
THA.LOC104802587 Tarenaya hassleriana HOM05D005806 ORTHO05D007119 3.4e-60 236.9 529 37.8
AUR62015254 Chenopodium quinoa HOM05D005806 ORTHO05D007119 5.7e-60 236.1 286 49.7
Psat4g025560 Pisum sativum HOM05D005806 ORTHO05D007119 7.5e-60 235.7 448 39.5
MBI18_g21793_MAGBIO Magnolia biondii HOM05D005806 ORTHO05D007119 1.3e-59 235.0 517 39.1
CANSAT78G0145 Cannabis sativa HOM05D005806 ORTHO05D007119 1.4e-58 231.5 470 40.9
Oeu054004.1 Olea europaea HOM05D005806 ORTHO05D007119 4.1e-58 229.9 508 36.4
MSTRG.10119 Avicennia marina HOM05D005806 ORTHO05D007119 5.3e-58 229.6 475 40.8
BcaC09g48634 Brassica carinata HOM05D005806 ORTHO05D007119 9.1e-58 228.8 522 36.0
Sed0007282 Sechium edule HOM05D005806 ORTHO05D007119 4.5e-57 226.5 506 37.2
Phvul.003G107800 Phaseolus vulgaris HOM05D005806 ORTHO05D007119 5.9e-57 226.1 445 37.8
A01p37530 Brassica napus HOM05D005806 ORTHO05D007119 7.7e-57 225.7 528 35.6
Gohir.D10G172900 Gossypium hirsutum HOM05D005806 ORTHO05D007119 1.0e-56 225.3 550 38.2
CiPaw.01G145000 Carya illinoinensis HOM05D005806 ORTHO05D007119 3.8e-56 223.4 473 38.9
SalBow5G0238 Salvia bowleyana HOM05D005806 ORTHO05D007119 3.8e-56 223.4 581 35.8
CDE12G0749 Ceratophyllum demersum HOM05D005806 ORTHO05D007119 4.2e-55 219.9 526 38.0
MD13G1163500 Malus domestica HOM05D005806 ORTHO05D007119 1.2e-54 218.4 294 48.0
PGR031G2493 Punica granatum HOM05D005806 ORTHO05D007119 3.0e-53 213.8 458 38.9
SEGI_25850 Sequoiadendron giganteum HOM05D005806 ORTHO05D007119 6.8e-53 212.6 593 34.7
Rhsim04G0227400 Rhododendron simsii HOM05D005806 ORTHO05D007119 1.2e-52 211.8 250 53.2
Sc13g0003160 Simmondsia chinensis HOM05D005806 ORTHO05D007119 1.5e-52 211.5 472 38.3
MELO3C006687.2 Cucumis melo HOM05D005806 ORTHO05D007119 2.6e-52 210.7 455 37.4
Oeu006424.1 Olea europaea HOM05D005806 ORTHO05D007119 9.8e-52 208.8 541 34.9
Gohir.A10G166900 Gossypium hirsutum HOM05D005806 ORTHO05D007119 2.8e-51 207.2 483 37.7
HanXRQChr13g0413981 Helianthus annuus HOM05D005806 ORTHO05D007119 3.1e-50 203.8 147 71.4
Lalb_Chr07g0182271 Lupinus albus HOM05D005806 ORTHO05D007119 7.0e-50 202.6 501 35.7
TAR362G1179 Trochodendron aralioides HOM05D005806 ORTHO05D007119 2.0e-49 201.1 307 45.6
Actinidia40301 Actinidia chinensis HOM05D005806 ORTHO05D007119 1.0e-48 198.7 475 39.6
CsaV3_3G014910 Cucumis sativus L. HOM05D005806 ORTHO05D007119 4.0e-45 186.8 419 36.8
Lalb_Chr13g0298181 Lupinus albus HOM05D005806 ORTHO05D007119 4.0e-45 186.8 191 54.5
Dinv29717 Davidia involucrata HOM05D005806 ORTHO05D007119 3.2e-42 177.2 289 41.9
CDE01G0725 Ceratophyllum demersum HOM05D005806 ORTHO05D007119 1.9e-39 167.9 501 31.7
SMO334G0099 Selaginella moellendorffii HOM05D005806 ORTHO05D007119 2.4e-34 151.0 351 37.0
Pp3c12_16600 Physcomitrium patens HOM05D005806 ORTHO05D007119 8.6e-32 142.5 416 32.7
HPP92_002153 Vanilla planifolia HOM05D005806 ORTHO05D007119 2.8e-30 137.5 96 74.0
AagrBONN_evm.TU.Sc2ySwM_228.3483 Anthoceros agrestis HOM05D005806 ORTHO05D007119 3.9e-24 117.1 238 37.4
Mapoly0005s0119 Marchantia polymorpha HOM05D005806 ORTHO05D007119 1.6e-22 111.7 410 29.3
CBR_g4056 Chara braunii HOM05D005806 ORTHO05D007119 1.1e-21 109.0 317 32.8
unitig_699.g19987 Utricularia gibba HOM05D005806 ORTHO05D007119 5.2e-21 106.7 506 28.5
CSS0010946 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 8.9e-21 105.9 72 69.4
Pp3c4_12130 Physcomitrium patens HOM05D005806 ORTHO05D007119 1.3e-19 102.1 355 31.3
SGA_v2.0_scaffold119G32699 Striga asiatica HOM05D005806 ORTHO05D007119 4.9e-19 100.1 145 43.4
CSS0023833 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 1.1e-18 99.0 72 66.7
AL3G29680 Arabidopsis lyrata HOM05D005806 ORTHO05D007119 1.0e-16 92.4 310 34.2
FAN15G2853 Fragaria x ananassa HOM05D005806 ORTHO05D007119 9.6e-15 85.9 59 72.9
Dinv29718 Davidia involucrata HOM05D000037 ORTHO05D000150 1.5e-12 78.6 129 44.2
Lj5A239G80 Lonicera japonica HOM05D001310 ORTHO05D001283 2.1e-09 68.2 137 33.6
TAR633G1627 Trochodendron aralioides HOM05D005806 ORTHO05D007119 3.5e-09 67.4 195 34.4
CBR_g31779 Chara braunii HOM05D000019 ORTHO05D000002 7.8e-09 66.2 93 35.5
EL10Ac5g11565 Beta vulgaris HOM05D001310 ORTHO05D001283 3.9e-08 63.9 122 32.0
SEGI_22675 Sequoiadendron giganteum HOM05D001310 ORTHO05D001283 3.9e-08 63.9 135 31.9
CANSAT80G2848 Cannabis sativa HOM05D001310 ORTHO05D001283 5.1e-08 63.5 122 33.6
TAR362G0821 Trochodendron aralioides HOM05D005806 ORTHO05D007119 1.1e-07 62.4 165 34.5
Migut.B00605 Erythranthe guttata HOM05D001310 ORTHO05D001283 1.5e-07 62.0 121 33.1
PRCOL_00000793 Prasinoderma coloniale HOM05D002462 ORTHO05D007680 1.9e-07 61.6 124 28.2
MD14G1236500 Malus domestica HOM05D001310 ORTHO05D001283 2.5e-07 61.2 122 32.8
Sc18g0006830 Simmondsia chinensis HOM05D001310 ORTHO05D001283 2.5e-07 61.2 117 31.6
Lsat_1_v5_gn_8_301 Lactuca sativa HOM05D001310 ORTHO05D001283 3.3e-07 60.8 122 31.1
AUR62015253 Chenopodium quinoa HOM05D005806 ORTHO05D007119 4.3e-07 60.5 171 31.6
Nitab4.5_0004556g0020 Nicotiana tabacum HOM05D001310 ORTHO05D001283 4.3e-07 60.5 122 32.0
Zm00001eb255310 Zea mays HOM05D001310 ORTHO05D001283 4.3e-07 60.5 117 30.8
HanXRQChr05g0142631 Helianthus annuus HOM05D001310 ORTHO05D023385 5.6e-07 60.1 121 32.2
Os02g0754500 Oryza sativa ssp. japonica HOM05D001310 ORTHO05D001283 5.6e-07 60.1 120 30.8
Psat3g143400 Pisum sativum HOM05D003946 ORTHO05D004485 5.6e-07 60.1 123 29.3
SalBow5G0105 Salvia bowleyana HOM05D001310 ORTHO05D001283 7.3e-07 59.7 131 32.1
Solyc10g047300.2 Solanum lycopersicum HOM05D001310 ORTHO05D001283 7.3e-07 59.7 131 31.3
arahy.Tifrunner.gnm1.ann1.69CB9U Arachis hypogaea HOM05D003946 ORTHO05D004485 9.6e-07 59.3 123 27.6
Gohir.D04G087100 Gossypium hirsutum HOM05D003946 ORTHO05D004485 9.6e-07 59.3 123 30.1
Gorai.012G097100 Gossypium raimondii HOM05D003946 ORTHO05D004485 9.6e-07 59.3 123 30.1
Nn2g14258 Nelumbo nucifera HOM05D003946 ORTHO05D004485 9.6e-07 59.3 123 29.3
Peaxi162Scf00683g00463 Petunia axillaris HOM05D001310 ORTHO05D001283 9.6e-07 59.3 121 31.4
Sopen10g017560 Solanum pennellii HOM05D001310 ORTHO05D001283 9.6e-07 59.3 131 30.5
Nitab4.5_0003401g0010 Nicotiana tabacum HOM05D001310 ORTHO05D001283 1.3e-06 58.9 122 32.0
MD06G1227100 Malus domestica HOM05D001310 ORTHO05D001283 1.6e-06 58.5 122 32.8
SGA_v2.0_scaffold36G14382 Striga asiatica HOM05D001310 ORTHO05D001283 1.6e-06 58.5 122 29.5
CBR_g39021 Chara braunii HOM05D000003 ORTHO05D000004 2.1e-06 58.2 83 33.7
DCAR_014505 Daucus carota HOM05D001310 ORTHO05D001283 2.1e-06 58.2 122 32.0
TPR.G23301 Trifolium pratense HOM05D003946 ORTHO05D004485 2.1e-06 58.2 123 30.1
HanXRQChr05g0142641 Helianthus annuus HOM05D001310 ORTHO05D001283 2.8e-06 57.8 120 30.8
Lalb_Chr07g0193951 Lupinus albus HOM05D003946 ORTHO05D004485 2.8e-06 57.8 123 29.3
FAN21G2611 Fragaria x ananassa HOM05D003946 ORTHO05D004485 3.6e-06 57.4 124 26.6
Lj4g0012280 Lotus japonicus HOM05D003946 ORTHO05D004485 3.6e-06 57.4 123 30.1
PSO782G1270 Papaver somniferum HOM05D003946 ORTHO05D004485 3.6e-06 57.4 123 26.8
FvH4_5g32480 Fragaria vesca HOM05D005806 ORTHO05D007119 4.8e-06 57.0 113 41.6
Gohir.A05G345884 Gossypium hirsutum HOM05D003946 ORTHO05D004485 4.8e-06 57.0 123 29.3
PSO210G1136 Papaver somniferum HOM05D003946 ORTHO05D004485 4.8e-06 57.0 123 28.5
PSO832G3676 Papaver somniferum HOM05D003946 ORTHO05D004485 4.8e-06 57.0 123 28.5
ATR0564G362 Amborella trichopoda HOM05D001310 ORTHO05D001283 6.2e-06 56.6 125 31.2
arahy.Tifrunner.gnm1.ann1.5R3BA8 Arachis hypogaea HOM05D003946 ORTHO05D004485 6.2e-06 56.6 123 26.8
arahy.Tifrunner.gnm1.ann1.8RX8VY Arachis hypogaea HOM05D003946 ORTHO05D004485 6.2e-06 56.6 123 26.8
COL.COLO4_04375 Corchorus olitorius HOM05D001310 ORTHO05D001283 8.1e-06 56.2 122 29.5


User provided reference genes

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