Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0334200 Oryza sativa ssp. japonica HOM05D021806 ORTHO05D004682 0.0e+00 1293.9 700 100.0
Zm00001eb015970 Zea mays HOM05D021806 ORTHO05D004682 5.1e-139 499.2 680 51.2
Zm00001eb395190 Zea mays HOM05D021806 ORTHO05D004682 1.1e-136 491.5 677 50.2
Os07g0680600 Oryza sativa ssp. japonica HOM05D021806 ORTHO05D004682 6.4e-73 279.6 682 33.4
Zm00001eb111590 Zea mays HOM05D021806 ORTHO05D004682 2.1e-63 248.1 677 33.1
Zm00001eb330730 Zea mays HOM05D021806 ORTHO05D004682 1.3e-57 228.8 754 31.4
ATR1127G123 Amborella trichopoda HOM05D002045 ORTHO05D002014 1.2e-15 89.4 264 29.2
Ca_23243_v3 Cicer arietinum L. HOM05D005345 ORTHO05D004682 3.9e-14 84.3 171 33.3
LjContig00408g0007312 Lotus japonicus HOM05D005345 ORTHO05D004682 4.4e-13 80.9 196 30.1
Zm00001eb195450 Zea mays HOM05D032425 ORTHO05D036987 5.7e-13 80.5 181 33.1
arahy.Tifrunner.gnm1.ann1.A39QJ2 Arachis hypogaea HOM05D005345 ORTHO05D004682 8.2e-12 76.6 222 28.8
Aqoxy4G03281 Aquilegia oxysepala HOM05D005345 ORTHO05D004682 1.1e-11 76.3 170 31.8
Os02g0464500 Oryza sativa ssp. japonica HOM05D032425 ORTHO05D036987 1.4e-11 75.9 172 33.1
TAR633G2169 Trochodendron aralioides HOM05D005345 ORTHO05D004682 1.4e-11 75.9 204 29.9
arahy.Tifrunner.gnm1.ann1.0QV8DZ Arachis hypogaea HOM05D005345 ORTHO05D004682 3.1e-11 74.7 222 28.8
Glyma.14G186800 Glycine max HOM05D005345 ORTHO05D004682 7.0e-11 73.6 130 36.2
TAR636G0005 Trochodendron aralioides HOM05D005345 ORTHO05D004682 7.0e-11 73.6 97 39.2
TPR.G33944 Trifolium pratense HOM05D005345 ORTHO05D004682 1.2e-10 72.8 216 28.2
HPP92_022866 Vanilla planifolia HOM05D005345 ORTHO05D004682 1.2e-10 72.8 144 31.2
Nn5g26827 Nelumbo nucifera HOM05D005345 ORTHO05D004682 1.6e-10 72.4 120 39.2
C09p71510 Brassica napus HOM05D010812 ORTHO05D004682 2.0e-10 72.0 628 22.9
Os11g0117700 Oryza sativa ssp. japonica HOM05D032425 ORTHO05D036987 2.0e-10 72.0 166 32.5
Phvul.008G186500 Phaseolus vulgaris HOM05D005345 ORTHO05D004682 5.9e-10 70.5 199 28.1
Psat2g061880 Pisum sativum HOM05D005345 ORTHO05D004682 7.7e-10 70.1 217 28.1
Glyma.02G219400 Glycine max HOM05D005345 ORTHO05D004682 1.0e-09 69.7 203 29.1
MBI03_g40812_MAGBIO Magnolia biondii HOM05D002045 ORTHO05D002014 1.0e-09 69.7 168 33.3
Lalb_Chr10g0102841 Lupinus albus HOM05D005345 ORTHO05D004682 1.3e-09 69.3 126 31.7
Cpa.g.sc19.39 Carica papaya HOM05D005345 ORTHO05D004682 2.2e-09 68.6 175 28.0
PSO017G7165 Papaver somniferum HOM05D005345 ORTHO05D004682 2.9e-09 68.2 163 28.8
Sed0015893 Sechium edule HOM05D005345 ORTHO05D004682 2.9e-09 68.2 169 29.0
ECA238G0953 Erigeron canadensis HOM05D005345 ORTHO05D004682 3.8e-09 67.8 55 50.9
FAN10G1366 Fragaria x ananassa HOM05D005345 ORTHO05D004682 3.8e-09 67.8 170 31.2
COL.COLO4_19477 Corchorus olitorius HOM05D005345 ORTHO05D004682 5.0e-09 67.4 181 31.5
BraA10t45145Z Brassica rapa HOM05D010812 ORTHO05D004682 6.5e-09 67.0 633 22.0
Migut.F00566 Erythranthe guttata HOM05D005345 ORTHO05D004682 6.5e-09 67.0 633 21.8
Manes.10G003400 Manihot esculenta HOM05D005345 ORTHO05D004682 6.5e-09 67.0 203 30.5
Psat5g069400 Pisum sativum HOM05D005345 ORTHO05D004682 6.5e-09 67.0 127 33.9
Ciclev10030619m.g Citrus clementina HOM05D005345 ORTHO05D004682 8.5e-09 66.6 53 50.9
Haze_17372 Corylus avellana HOM05D005345 ORTHO05D004682 1.1e-08 66.2 213 27.7
Atru.chr12.192 Acer truncatum HOM05D005345 ORTHO05D004682 1.5e-08 65.9 198 28.8
Atru.chr2.761 Acer truncatum HOM05D002045 ORTHO05D002014 1.5e-08 65.9 54 53.7
Atru.chr9.2039 Acer truncatum HOM05D002045 ORTHO05D002014 1.5e-08 65.9 54 53.7
Eucgr.J00102 Eucalyptus grandis HOM05D005345 ORTHO05D004682 1.5e-08 65.9 200 27.5
MD01G1169800 Malus domestica HOM05D005345 ORTHO05D004682 1.5e-08 65.9 209 26.8
TAR369G0882 Trochodendron aralioides HOM05D005345 ORTHO05D004682 1.5e-08 65.9 173 26.0
Thhalv10013098m.g Eutrema salsugineum HOM05D010812 ORTHO05D004682 1.9e-08 65.5 611 21.8
TWI53G1830 Tripterygium wilfordii HOM05D005345 ORTHO05D004682 2.5e-08 65.1 212 28.8
CSS0033913 Camellia sinensis var. sinensis HOM05D005345 ORTHO05D004682 3.2e-08 64.7 153 28.8
CANSAT56G0136 Cannabis sativa HOM05D002045 ORTHO05D002014 3.2e-08 64.7 46 56.5
FAN06G3940 Fragaria x ananassa HOM05D005345 ORTHO05D004682 3.2e-08 64.7 176 30.7
Lj8C52G7 Lonicera japonica HOM05D005345 ORTHO05D004682 3.2e-08 64.7 186 28.0
Actinidia13637 Actinidia chinensis HOM05D005345 ORTHO05D004682 4.2e-08 64.3 195 29.7
Gohir.A10G177500 Gossypium hirsutum HOM05D005345 ORTHO05D004682 4.2e-08 64.3 184 30.4
Potri.019G061400 Populus trichocarpa HOM05D005345 ORTHO05D004682 4.2e-08 64.3 83 43.4
Zm00001eb149630 Zea mays HOM05D021634 ORTHO05D023031 4.2e-08 64.3 147 31.3
FvH4_7g26160 Fragaria vesca HOM05D005345 ORTHO05D004682 5.5e-08 63.9 176 30.7
TAR636G2104 Trochodendron aralioides HOM05D005345 ORTHO05D004682 5.5e-08 63.9 254 28.0
VMungo1309G1748 Vigna mungo HOM05D005345 ORTHO05D004682 7.2e-08 63.5 189 27.5
A10p31000 Brassica napus HOM05D010812 ORTHO05D004682 1.2e-07 62.8 628 21.5
Lalb_Chr11g0067691 Lupinus albus HOM05D005345 ORTHO05D004682 1.2e-07 62.8 173 28.9
Rhsim09G0186300 Rhododendron simsii HOM05D005345 ORTHO05D004682 1.2e-07 62.8 54 46.3
Hund14235 Selenicereus undatus HOM05D002045 ORTHO05D002014 1.2e-07 62.8 50 50.0
Medtr3g093780 Medicago truncatula HOM05D005345 ORTHO05D004682 1.6e-07 62.4 54 48.1
BcaB01g05942 Brassica carinata HOM05D010812 ORTHO05D004682 2.1e-07 62.0 147 29.9
C03p02570 Brassica napus HOM05D010812 ORTHO05D004682 2.1e-07 62.0 147 29.9
BolC3t12809H Brassica oleracea HOM05D010812 ORTHO05D004682 2.1e-07 62.0 147 29.9
CANSAT56G0683 Cannabis sativa HOM05D005345 ORTHO05D004682 2.1e-07 62.0 140 30.7
Carub.0006s0412 Capsella rubella HOM05D010812 ORTHO05D004682 2.1e-07 62.0 147 27.9
FAN01G1672 Fragaria x ananassa HOM05D005345 ORTHO05D004682 2.7e-07 61.6 176 30.1
CSS0024314 Camellia sinensis var. sinensis HOM05D005345 ORTHO05D004682 3.6e-07 61.2 155 30.3
PSO170G1015 Papaver somniferum HOM05D005345 ORTHO05D004682 3.6e-07 61.2 157 28.7
Cc08_g15800 Coffea canephora HOM05D002045 ORTHO05D002014 4.7e-07 60.8 34 67.6
CsaV3_6G002400 Cucumis sativus L. HOM05D005345 ORTHO05D004682 4.7e-07 60.8 119 33.6
Lj1g0012895 Lotus japonicus HOM05D005345 ORTHO05D004682 4.7e-07 60.8 134 32.1
Phvul.009G042600 Phaseolus vulgaris HOM05D005345 ORTHO05D004682 4.7e-07 60.8 128 30.5
Prupe.2G265800 Prunus persica HOM05D005345 ORTHO05D004682 4.7e-07 60.8 210 27.1
Sed0004419 Sechium edule HOM05D005345 ORTHO05D004682 4.7e-07 60.8 197 27.9
AUR62010811 Chenopodium quinoa HOM05D002045 ORTHO05D002014 6.1e-07 60.5 45 51.1
ClCG11G005600 Citrullus lanatus HOM05D005345 ORTHO05D004682 6.1e-07 60.5 51 43.1
Glyma.16G026700 Glycine max HOM05D002045 ORTHO05D002014 6.1e-07 60.5 40 62.5
PSO063G1517 Papaver somniferum HOM05D002045 ORTHO05D002014 6.1e-07 60.5 38 63.2
Atru.chr5.629 Acer truncatum HOM05D002045 ORTHO05D002014 8.0e-07 60.1 191 25.7
Aqoxy7G00147 Aquilegia oxysepala HOM05D002045 ORTHO05D002014 8.0e-07 60.1 61 45.9
Eucgr.G03149 Eucalyptus grandis HOM05D005345 ORTHO05D004682 8.0e-07 60.1 192 27.1
Medtr5g068060 Medicago truncatula HOM05D005345 ORTHO05D004682 8.0e-07 60.1 119 31.1
QL08p065100 Quercus lobata HOM05D005345 ORTHO05D004682 8.0e-07 60.1 126 30.2
Zm00001eb290690 Zea mays HOM05D021634 ORTHO05D023031 8.0e-07 60.1 145 28.3
Aa31LG11G6050 Aethionema arabicum HOM05D010812 ORTHO05D004682 1.0e-06 59.7 154 27.9
EL10Ac5g12890 Beta vulgaris HOM05D002045 ORTHO05D002014 1.0e-06 59.7 43 53.5
Glyma.06G141400 Glycine max HOM05D005345 ORTHO05D004682 1.0e-06 59.7 198 26.8
Lalb_Chr08g0239261 Lupinus albus HOM05D005345 ORTHO05D004682 1.0e-06 59.7 65 40.0
TWI60G0276 Tripterygium wilfordii HOM05D002045 ORTHO05D002014 1.0e-06 59.7 34 70.6
ATR1100G028 Amborella trichopoda HOM05D002045 ORTHO05D002014 1.4e-06 59.3 105 29.5
arahy.Tifrunner.gnm1.ann1.WMYS0M Arachis hypogaea HOM05D002045 ORTHO05D002014 1.4e-06 59.3 598 22.9
MBI07_g24336_MAGBIO Magnolia biondii HOM05D002045 ORTHO05D002014 1.4e-06 59.3 158 27.2
Manes.07G142000 Manihot esculenta HOM05D005345 ORTHO05D004682 1.4e-06 59.3 54 40.7
Os01g0621300 Oryza sativa ssp. japonica HOM05D002045 ORTHO05D002014 1.4e-06 59.3 48 56.2
RcHm_v2.0_Chr1g0372591 Rosa chinensis HOM05D005345 ORTHO05D004682 1.4e-06 59.3 185 29.7
Cfa003827 Carpinus fangiana HOM05D002045 ORTHO05D002014 1.8e-06 58.9 50 40.0
Os05g0586400 Oryza sativa ssp. japonica HOM05D002045 ORTHO05D002014 1.8e-06 58.9 134 32.1
PSO017G5511 Papaver somniferum HOM05D002045 ORTHO05D002014 1.8e-06 58.9 38 60.5
vmacro09953 Vaccinium macrocarpon HOM05D005345 ORTHO05D004682 1.8e-06 58.9 54 38.9
Actinidia22722 Actinidia chinensis HOM05D002045 ORTHO05D002014 2.3e-06 58.5 34 67.6
Ah.12g052330 Amaranthus hybridus HOM05D000337 ORTHO05D000297 2.3e-06 58.5 74 39.2
Haze_15628 Corylus avellana HOM05D002045 ORTHO05D002014 2.3e-06 58.5 50 40.0
MD07G1235500 Malus domestica HOM05D005345 ORTHO05D004682 2.3e-06 58.5 204 25.5
Oeu018746.1 Olea europaea HOM05D005345 ORTHO05D004682 2.3e-06 58.5 141 31.2
Oeu018747.2 Olea europaea HOM05D005345 ORTHO05D004682 2.3e-06 58.5 141 31.2
PGR142G1797 Punica granatum HOM05D005345 ORTHO05D004682 2.3e-06 58.5 166 28.9
Rhsim07G0083700 Rhododendron simsii HOM05D002045 ORTHO05D002014 2.3e-06 58.5 46 52.2
Sp4g28410 Schrenkiella parvula HOM05D002045 ORTHO05D002014 2.3e-06 58.5 105 29.5
GSVIVG01027058001 Vitis vinifera HOM05D002045 ORTHO05D002014 2.3e-06 58.5 87 29.9
arahy.Tifrunner.gnm1.ann1.DZPX8Q Arachis hypogaea HOM05D005345 ORTHO05D004682 3.0e-06 58.2 62 45.2
arahy.Tifrunner.gnm1.ann1.E2ZVAX Arachis hypogaea HOM05D005345 ORTHO05D004682 3.0e-06 58.2 62 45.2
CDE09G0206 Ceratophyllum demersum HOM05D002045 ORTHO05D002014 3.0e-06 58.2 53 43.4
Ca_16857_v3 Cicer arietinum L. HOM05D005345 ORTHO05D004682 3.0e-06 58.2 204 27.5
Ca_29505_v3 Cicer arietinum L. HOM05D005345 ORTHO05D004682 3.0e-06 58.2 204 27.5
FvH4_7g16060 Fragaria vesca HOM05D002045 ORTHO05D002014 3.0e-06 58.2 55 47.3
Nitab4.5_0005979g0010 Nicotiana tabacum HOM05D005345 ORTHO05D004682 3.0e-06 58.2 67 46.3
PSO384G3902 Papaver somniferum HOM05D002045 ORTHO05D002014 3.0e-06 58.2 79 40.5
Ah.11g042470 Amaranthus hybridus HOM05D005345 ORTHO05D004682 4.0e-06 57.8 174 29.3
CDE02G3823 Ceratophyllum demersum HOM05D002045 ORTHO05D002014 4.0e-06 57.8 53 43.4
ClCG07G014900 Citrullus lanatus HOM05D002045 ORTHO05D002014 4.0e-06 57.8 34 61.8
Duzib128G0800 Durio zibethinus HOM05D005345 ORTHO05D004682 4.0e-06 57.8 51 47.1
AT2G46380 Arabidopsis thaliana HOM05D002045 ORTHO05D002014 5.2e-06 57.4 70 38.6
C08p36520 Brassica napus HOM05D002045 ORTHO05D002014 5.2e-06 57.4 581 22.0
BolC8t51235H Brassica oleracea HOM05D002045 ORTHO05D002014 5.2e-06 57.4 581 22.0
AUR62019810 Chenopodium quinoa HOM05D002045 ORTHO05D002014 5.2e-06 57.4 45 48.9
Ca_26753_v3 Cicer arietinum L. HOM05D002045 ORTHO05D002014 5.2e-06 57.4 70 42.9
Oeu006068.1 Olea europaea HOM05D005345 ORTHO05D004682 5.2e-06 57.4 54 42.6
Sp5g01740 Schrenkiella parvula HOM05D002045 ORTHO05D002014 5.2e-06 57.4 142 34.5
Hund15794 Selenicereus undatus HOM05D005345 ORTHO05D004682 5.2e-06 57.4 164 29.9
TPR.G13957 Trifolium pratense HOM05D005345 ORTHO05D004682 6.7e-06 57.0 34 61.8
Dinv38855 Davidia involucrata HOM05D002045 ORTHO05D002014 8.8e-06 56.6 111 33.3
Lsat_1_v5_gn_1_90561 Lactuca sativa HOM05D000041 ORTHO05D000452 8.8e-06 56.6 56 46.4
Potri.003G137700 Populus trichocarpa HOM05D002045 ORTHO05D002014 8.8e-06 56.6 34 64.7
PGR044G0353 Punica granatum HOM05D005345 ORTHO05D004682 8.8e-06 56.6 143 30.1
Rhsim03G0153800 Rhododendron simsii HOM05D005345 ORTHO05D004682 8.8e-06 56.6 54 44.4
THA.LOC104817047 Tarenaya hassleriana HOM05D002045 ORTHO05D002014 8.8e-06 56.6 167 29.3


User provided reference genes

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