Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0334100 Oryza sativa ssp. japonica HOM05D006410 ORTHO05D007914 3.4e-63 245.7 230 100.0
Zm00001eb395200 Zea mays HOM05D006410 ORTHO05D007914 2.2e-38 163.3 100 84.0
CAN.G1018.3 Capsicum annuum HOM05D006410 ORTHO05D007914 5.1e-35 152.1 101 76.2
Solyc10g085690.2 Solanum lycopersicum HOM05D006410 ORTHO05D007914 6.6e-35 151.8 101 76.2
Sopen10g035110 Solanum pennellii HOM05D006410 ORTHO05D007914 6.6e-35 151.8 101 76.2
Nitab4.5_0009611g0010 Nicotiana tabacum HOM05D006410 ORTHO05D007914 8.6e-35 151.4 101 75.2
Glyma.09G273700 Glycine max HOM05D006410 ORTHO05D007914 4.3e-34 149.1 99 73.7
TAR633G1493 Trochodendron aralioides HOM05D006410 ORTHO05D007914 5.6e-34 148.7 99 74.7
Dinv16966 Davidia involucrata HOM05D006410 ORTHO05D007914 7.3e-34 148.3 101 71.3
Phvul.008G081500 Phaseolus vulgaris HOM05D006410 ORTHO05D007914 9.5e-34 147.9 99 72.7
Atru.chr8.91 Acer truncatum HOM05D006410 ORTHO05D007914 1.6e-33 147.1 99 72.7
CiPaw.10G165500 Carya illinoinensis HOM05D006410 ORTHO05D007914 1.6e-33 147.1 101 70.3
Glyma.18G212900 Glycine max HOM05D006410 ORTHO05D007914 1.6e-33 147.1 99 73.7
Lj3A940G60 Lonicera japonica HOM05D006410 ORTHO05D007914 1.6e-33 147.1 101 72.3
Cpa.g.sc86.77 Carica papaya HOM05D006410 ORTHO05D007914 3.6e-33 146.0 106 67.9
VMungo1383G1039 Vigna mungo HOM05D006410 ORTHO05D007914 4.7e-33 145.6 99 71.7
Ciclev10012138m.g Citrus clementina HOM05D006410 ORTHO05D007914 6.2e-33 145.2 99 72.7
CARHR133250 Cardamine hirsuta HOM05D006410 ORTHO05D007914 8.1e-33 144.8 98 71.4
Duzib212G0115 Durio zibethinus HOM05D006410 ORTHO05D007914 1.1e-32 144.4 99 69.7
Peaxi162Scf00146g01120 Petunia axillaris HOM05D006410 ORTHO05D007914 1.1e-32 144.4 101 71.3
Cfa013491 Carpinus fangiana HOM05D006410 ORTHO05D007914 1.4e-32 144.1 101 70.3
QL07p031892 Quercus lobata HOM05D006410 ORTHO05D007914 1.4e-32 144.1 101 69.3
Haze_22079 Corylus avellana HOM05D006410 ORTHO05D007914 1.8e-32 143.7 101 69.3
Lalb_Chr03g0043841 Lupinus albus HOM05D006410 ORTHO05D007914 2.4e-32 143.3 99 69.7
RcHm_v2.0_Chr3g0460291 Rosa chinensis HOM05D006410 ORTHO05D007914 3.1e-32 142.9 101 69.3
CDE04G0338 Ceratophyllum demersum HOM05D006410 ORTHO05D007914 4.0e-32 142.5 101 72.3
GSVIVG01030169001 Vitis vinifera HOM05D006410 ORTHO05D007914 4.0e-32 142.5 99 68.7
arahy.Tifrunner.gnm1.ann1.LV5WBC Arachis hypogaea HOM05D006410 ORTHO05D007914 5.2e-32 142.1 99 70.7
arahy.Tifrunner.gnm1.ann1.K0FU58 Arachis hypogaea HOM05D006410 ORTHO05D007914 8.9e-32 141.4 99 71.7
Lj1g0017463 Lotus japonicus HOM05D006410 ORTHO05D007914 1.2e-31 141.0 101 69.3
MELO3C025226.2 Cucumis melo HOM05D006410 ORTHO05D007914 1.5e-31 140.6 101 67.3
Ca_07767_v3 Cicer arietinum L. HOM05D006410 ORTHO05D007914 2.6e-31 139.8 99 69.7
Manes.09G123200 Manihot esculenta HOM05D006410 ORTHO05D007914 3.4e-31 139.4 99 69.7
PGR004G0643 Punica granatum HOM05D006410 ORTHO05D007914 3.4e-31 139.4 99 70.7
TPR.G24331 Trifolium pratense HOM05D006410 ORTHO05D007914 3.4e-31 139.4 99 70.7
CsaV3_4G027230 Cucumis sativus L. HOM05D006410 ORTHO05D007914 4.4e-31 139.0 99 67.7
THA.LOC104806212 Tarenaya hassleriana HOM05D006410 ORTHO05D007914 4.4e-31 139.0 101 67.3
Rhsim05G0231700 Rhododendron simsii HOM05D006410 ORTHO05D007914 5.8e-31 138.7 101 65.3
Actinidia20795 Actinidia chinensis HOM05D006410 ORTHO05D007914 7.6e-31 138.3 98 69.4
Nn2g10260 Nelumbo nucifera HOM05D006410 ORTHO05D007914 7.6e-31 138.3 99 66.7
Potri.006G109500 Populus trichocarpa HOM05D006410 ORTHO05D007914 7.6e-31 138.3 99 67.7
AL4G35850 Arabidopsis lyrata HOM05D006410 ORTHO05D007914 9.9e-31 137.9 98 68.4
Eucgr.H04867 Eucalyptus grandis HOM05D006410 ORTHO05D007914 9.9e-31 137.9 99 68.7
Eucgr.J00376 Eucalyptus grandis HOM05D006410 ORTHO05D007914 9.9e-31 137.9 99 68.7
FAN09G0831 Fragaria x ananassa HOM05D006410 ORTHO05D007914 9.9e-31 137.9 101 67.3
Thhalv10017800m.g Eutrema salsugineum HOM05D006410 ORTHO05D007914 1.3e-30 137.5 98 68.4
Prupe.6G295400 Prunus persica HOM05D006410 ORTHO05D007914 1.3e-30 137.5 99 70.7
TWI77G0542 Tripterygium wilfordii HOM05D006410 ORTHO05D007914 1.3e-30 137.5 99 71.7
Aqoxy4G03284 Aquilegia oxysepala HOM05D006410 ORTHO05D007914 1.7e-30 137.1 101 66.3
FvH4_6g09660 Fragaria vesca HOM05D006410 ORTHO05D007914 1.7e-30 137.1 101 65.3
FAN05G4204 Fragaria x ananassa HOM05D006410 ORTHO05D007914 1.7e-30 137.1 101 66.3
FAN14G0316 Fragaria x ananassa HOM05D006410 ORTHO05D007914 1.7e-30 137.1 101 65.3
Medtr7g073510 Medicago truncatula HOM05D006410 ORTHO05D007914 1.7e-30 137.1 99 68.7
COL.COLO4_03931 Corchorus olitorius HOM05D006410 ORTHO05D007914 2.2e-30 136.7 101 64.4
FAN02G1808 Fragaria x ananassa HOM05D006410 ORTHO05D007914 2.2e-30 136.7 101 65.3
HanXRQChr15g0464751 Helianthus annuus HOM05D006410 ORTHO05D007914 2.2e-30 136.7 101 67.3
SalBow5G5142 Salvia bowleyana HOM05D006410 ORTHO05D007914 2.2e-30 136.7 101 64.4
Carub.0004s2056 Capsella rubella HOM05D006410 ORTHO05D007914 2.9e-30 136.3 98 67.3
ClCG04G006320 Citrullus lanatus HOM05D006410 ORTHO05D007914 2.9e-30 136.3 99 66.7
Eucgr.G01626 Eucalyptus grandis HOM05D006410 ORTHO05D007914 2.9e-30 136.3 99 67.7
vmacro20378 Vaccinium macrocarpon HOM05D006410 ORTHO05D007914 2.9e-30 136.3 101 63.4
HPP92_000776 Vanilla planifolia HOM05D006410 ORTHO05D007914 2.9e-30 136.3 99 67.7
HPP92_026801 Vanilla planifolia HOM05D006410 ORTHO05D007914 2.9e-30 136.3 99 67.7
Psat3g118640 Pisum sativum HOM05D006410 ORTHO05D007914 3.8e-30 136.0 99 70.7
Thecc.04G150000 Theobroma cacao HOM05D006410 ORTHO05D007914 3.8e-30 136.0 99 64.6
AUR62029781 Chenopodium quinoa HOM05D006410 ORTHO05D007914 4.9e-30 135.6 101 67.3
Eucgr.A00566 Eucalyptus grandis HOM05D006410 ORTHO05D007914 4.9e-30 135.6 99 67.7
ECA247G0827 Erigeron canadensis HOM05D006410 ORTHO05D007914 6.4e-30 135.2 101 65.3
Gohir.D02G003000 Gossypium hirsutum HOM05D006410 ORTHO05D007914 6.4e-30 135.2 101 64.4
Gorai.005G003500 Gossypium raimondii HOM05D006410 ORTHO05D007914 6.4e-30 135.2 101 64.4
Nitab4.5_0000381g0170 Nicotiana tabacum HOM05D006410 ORTHO05D007914 6.4e-30 135.2 135 56.3
PSO339G1476 Papaver somniferum HOM05D006410 ORTHO05D007914 6.4e-30 135.2 101 62.4
AT2G38570 Arabidopsis thaliana HOM05D006410 ORTHO05D007914 8.4e-30 134.8 98 66.3
Eucgr.G00130 Eucalyptus grandis HOM05D006410 ORTHO05D007914 8.4e-30 134.8 99 67.7
Hma1.2p1_0537F.1_g174300 Hydrangea macrophylla HOM05D006410 ORTHO05D007914 8.4e-30 134.8 99 64.6
Lsat_1_v5_gn_9_39501 Lactuca sativa HOM05D006410 ORTHO05D007914 8.4e-30 134.8 101 64.4
Gohir.A02G002700 Gossypium hirsutum HOM05D006410 ORTHO05D007914 1.4e-29 134.0 101 63.4
Sabra06G0085200 Salix brachista HOM05D006410 ORTHO05D007914 1.4e-29 134.0 99 65.7
ATR1127G206 Amborella trichopoda HOM05D006410 ORTHO05D007914 1.9e-29 133.7 99 65.7
arahy.Tifrunner.gnm1.ann1.2Y9ZDG Arachis hypogaea HOM05D006410 ORTHO05D007914 1.9e-29 133.7 99 67.7
Eucgr.K01292 Eucalyptus grandis HOM05D006410 ORTHO05D007914 1.9e-29 133.7 99 67.7
BcaB01g03675 Brassica carinata HOM05D006410 ORTHO05D007914 3.2e-29 132.9 98 65.3
BcaC01g05529 Brassica carinata HOM05D006410 ORTHO05D007914 3.2e-29 132.9 98 65.3
BolC3t14920H Brassica oleracea HOM05D006410 ORTHO05D007914 3.2e-29 132.9 98 65.3
PSO384G4459 Papaver somniferum HOM05D006410 ORTHO05D007914 3.2e-29 132.9 101 61.4
Sp4g20910 Schrenkiella parvula HOM05D006410 ORTHO05D007914 9.2e-29 131.3 98 66.3
A03p21390 Brassica napus HOM05D006410 ORTHO05D007914 1.6e-28 130.6 98 64.3
BraA03t11374Z Brassica rapa HOM05D006410 ORTHO05D007914 2.1e-28 130.2 98 64.3
MD12G1190300 Malus domestica HOM05D006410 ORTHO05D007914 2.1e-28 130.2 100 68.0
Sc07g0005960 Simmondsia chinensis HOM05D006410 ORTHO05D007914 2.7e-28 129.8 99 64.6
C03p25260 Brassica napus HOM05D006410 ORTHO05D007914 3.5e-28 129.4 98 63.3
MSTRG.5489 Avicennia marina HOM05D006410 ORTHO05D007914 6.0e-28 128.6 101 61.4
arahy.Tifrunner.gnm1.ann1.A09QMR Arachis hypogaea HOM05D006410 ORTHO05D007914 7.8e-28 128.3 99 64.6
arahy.Tifrunner.gnm1.ann1.PEH6CG Arachis hypogaea HOM05D006410 ORTHO05D007914 7.8e-28 128.3 99 64.6
Cc06_g00300 Coffea canephora HOM05D006410 ORTHO05D007914 1.0e-27 127.9 99 64.6
EL10Ac7g17116 Beta vulgaris HOM05D006410 ORTHO05D007914 2.3e-27 126.7 101 61.4
CANSAT21G1321 Cannabis sativa HOM05D006410 ORTHO05D007914 2.3e-27 126.7 88 75.0
Ca_07774_v3 Cicer arietinum L. HOM05D006410 ORTHO05D007914 3.0e-27 126.3 123 56.1
MD04G1175900 Malus domestica HOM05D006410 ORTHO05D007914 3.0e-27 126.3 99 65.7
SEGI_21416 Sequoiadendron giganteum HOM05D006410 ORTHO05D007914 3.9e-27 125.9 99 57.6
CSS0025367 Camellia sinensis var. sinensis HOM05D006410 ORTHO05D007914 1.6e-25 120.6 86 68.6
Hund19754 Selenicereus undatus HOM05D006410 ORTHO05D007914 3.6e-25 119.4 101 60.4
RhsimUnG0084100 Rhododendron simsii HOM05D006410 ORTHO05D007914 4.8e-25 119.0 86 66.3
Sed0027859 Sechium edule HOM05D006410 ORTHO05D007914 4.8e-25 119.0 83 72.3
RhsimUnG0080900 Rhododendron simsii HOM05D006410 ORTHO05D007914 1.1e-24 117.9 85 65.9
SGA_v2.0_scaffold85G26601 Striga asiatica HOM05D006410 ORTHO05D007914 7.1e-21 105.1 136 44.9
BcaB01g00971 Brassica carinata HOM05D006410 ORTHO05D007914 1.6e-20 104.0 120 49.2
arahy.Tifrunner.gnm1.ann1.CPU7B3 Arachis hypogaea HOM05D006410 ORTHO05D007914 3.5e-20 102.8 72 69.4
AagrBONN_evm.TU.Sc2ySwM_344.4011 Anthoceros agrestis HOM05D006410 ORTHO05D007914 1.1e-16 91.3 98 46.9
SalBow5G0627 Salvia bowleyana HOM05D006410 ORTHO05D007914 9.0e-16 88.2 64 64.1
SEGI_07330 Sequoiadendron giganteum HOM05D006410 ORTHO05D007914 3.5e-12 76.3 74 50.0
MCO09G517 Micromonas commoda HOM05D006410 ORTHO05D007914 9.6e-10 68.2 106 37.7
CBR_g644 Chara braunii HOM05D006410 ORTHO05D007914 1.2e-07 61.2 68 42.6
Duzib151G0462 Durio zibethinus HOM05D006410 ORTHO05D007914 2.6e-07 60.1 49 61.2
CSS0050432 Camellia sinensis var. sinensis HOM05D006410 ORTHO05D007914 1.7e-06 57.4 38 68.4


User provided reference genes

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