Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0333000 Oryza sativa ssp. japonica HOM05D006830 ORTHO05D008119 5.5e-144 515.0 425 100.0
Zm00001eb015900 Zea mays HOM05D006830 ORTHO05D008119 2.8e-55 220.3 452 63.1
Nn5g26811 Nelumbo nucifera HOM05D006830 ORTHO05D008119 5.0e-12 76.6 164 34.8
Sabra04G0154900 Salix brachista HOM05D006830 ORTHO05D008119 1.6e-10 71.6 202 32.2
Lj2A57T75 Lonicera japonica HOM05D006830 ORTHO05D008119 2.7e-10 70.9 207 36.2
arahy.Tifrunner.gnm1.ann1.QV5EPW Arachis hypogaea HOM05D006830 ORTHO05D008119 4.7e-10 70.1 195 33.8
Thecc.04G149300 Theobroma cacao HOM05D006830 ORTHO05D008119 6.1e-10 69.7 182 34.6
Nitab4.5_0000048g0180 Nicotiana tabacum HOM05D006830 ORTHO05D008119 8.0e-10 69.3 61 54.1
Gorai.006G236000 Gossypium raimondii HOM05D006830 ORTHO05D008119 1.0e-09 68.9 184 32.1
Peaxi162Scf00732g00253 Petunia axillaris HOM05D006830 ORTHO05D008119 1.4e-09 68.6 63 54.0
Duzib268G1795 Durio zibethinus HOM05D006830 ORTHO05D008119 1.8e-09 68.2 189 34.9
MBI15_g32284_MAGBIO Magnolia biondii HOM05D006830 ORTHO05D008119 1.8e-09 68.2 236 29.2
Lj1g0026994 Lotus japonicus HOM05D006830 ORTHO05D008119 2.3e-09 67.8 67 56.7
Potri.016G139000 Populus trichocarpa HOM05D006830 ORTHO05D008119 2.3e-09 67.8 211 29.9
Dinv16956 Davidia involucrata HOM05D006830 ORTHO05D008119 3.0e-09 67.4 61 55.7
Rhsim05G0232400 Rhododendron simsii HOM05D006830 ORTHO05D008119 3.0e-09 67.4 199 33.7
TPR.G24307 Trifolium pratense HOM05D006830 ORTHO05D008119 4.0e-09 67.0 64 48.4
TWI74G0093 Tripterygium wilfordii HOM05D006830 ORTHO05D008119 4.0e-09 67.0 67 52.2
HPP92_012572 Vanilla planifolia HOM05D006830 ORTHO05D008119 4.0e-09 67.0 112 39.3
Cc06_g00270 Coffea canephora HOM05D002857 ORTHO05D008347 5.2e-09 66.6 208 29.8
HPP92_012541 Vanilla planifolia HOM05D006830 ORTHO05D008119 5.2e-09 66.6 112 39.3
Atru.chr8.80 Acer truncatum HOM05D006830 ORTHO05D008119 6.8e-09 66.2 155 32.9
arahy.Tifrunner.gnm1.ann1.E2XN58 Arachis hypogaea HOM05D006830 ORTHO05D008119 6.8e-09 66.2 59 57.6
Manes.08G169600 Manihot esculenta HOM05D006830 ORTHO05D008119 6.8e-09 66.2 61 55.7
Hund03691 Selenicereus undatus HOM05D006830 ORTHO05D008119 6.8e-09 66.2 183 35.0
Hma1.2p1_0537F.1_g174220 Hydrangea macrophylla HOM05D006830 ORTHO05D008119 8.8e-09 65.9 80 47.5
PSO339G2021 Papaver somniferum HOM05D006830 ORTHO05D008119 1.2e-08 65.5 116 37.9
Oeu030099.2 Olea europaea HOM05D006830 ORTHO05D008119 1.5e-08 65.1 180 31.7
CSS0029082 Camellia sinensis var. sinensis HOM05D006830 ORTHO05D008119 2.0e-08 64.7 62 54.8
Eucgr.A00784 Eucalyptus grandis HOM05D006830 ORTHO05D008119 2.0e-08 64.7 200 33.0
Gohir.D09G215500 Gossypium hirsutum HOM05D006830 ORTHO05D008119 2.0e-08 64.7 184 31.5
Gohir.A09G213672 Gossypium hirsutum HOM05D006830 ORTHO05D008119 2.6e-08 64.3 178 33.7
Sopen09g010200 Solanum pennellii HOM05D006830 ORTHO05D008119 2.6e-08 64.3 124 37.9
TWI77G0580 Tripterygium wilfordii HOM05D006830 ORTHO05D008119 2.6e-08 64.3 196 31.1
MSTRG.18932 Avicennia marina HOM05D006830 ORTHO05D008119 3.4e-08 63.9 61 52.5
Ca_07782_v3 Cicer arietinum L. HOM05D006830 ORTHO05D008119 3.4e-08 63.9 64 50.0
COL.COLO4_21252 Corchorus olitorius HOM05D006830 ORTHO05D008119 3.4e-08 63.9 182 31.9
Hund19745 Selenicereus undatus HOM05D006830 ORTHO05D008119 3.4e-08 63.9 165 33.3
Glyma.18G216100 Glycine max HOM05D006830 ORTHO05D008119 4.4e-08 63.5 94 40.4
Sc20g0007150 Simmondsia chinensis HOM05D006830 ORTHO05D008119 4.4e-08 63.5 209 29.7
Medtr7g073700 Medicago truncatula HOM05D006830 ORTHO05D008119 7.5e-08 62.8 64 50.0
PSO384G2539 Papaver somniferum HOM05D006830 ORTHO05D008119 7.5e-08 62.8 192 33.3
Actinidia29020 Actinidia chinensis HOM05D006830 ORTHO05D008119 9.7e-08 62.4 68 48.5
VMungo1383G1745 Vigna mungo HOM05D006830 ORTHO05D008119 1.3e-07 62.0 60 55.0
Solyc09g016940.4 Solanum lycopersicum HOM05D006830 ORTHO05D008119 1.7e-07 61.6 124 37.9
Phvul.008G080600 Phaseolus vulgaris HOM05D006830 ORTHO05D008119 2.2e-07 61.2 62 51.6
Potri.006G110400 Populus trichocarpa HOM05D006830 ORTHO05D008119 2.2e-07 61.2 61 50.8
A03p21400 Brassica napus HOM05D006830 ORTHO05D008119 2.8e-07 60.8 203 35.0
BraA03t11375Z Brassica rapa HOM05D006830 ORTHO05D008119 2.8e-07 60.8 202 34.2
QL07p031724 Quercus lobata HOM05D006830 ORTHO05D008119 2.8e-07 60.8 59 54.2
AUR62006437 Chenopodium quinoa HOM05D006830 ORTHO05D008119 3.7e-07 60.5 183 31.1
PGR031G0539 Punica granatum HOM05D006830 ORTHO05D008119 3.7e-07 60.5 172 33.1
Glyma.09G273000 Glycine max HOM05D006830 ORTHO05D008119 4.8e-07 60.1 59 52.5
Lalb_Chr01g0023901 Lupinus albus HOM05D006830 ORTHO05D008119 4.8e-07 60.1 159 31.4
AUR62029792 Chenopodium quinoa HOM05D006830 ORTHO05D008119 6.3e-07 59.7 184 28.8
CANSAT21G1452 Cannabis sativa HOM05D006830 ORTHO05D008119 8.3e-07 59.3 61 54.1
CANSAT60G0001 Cannabis sativa HOM05D006830 ORTHO05D008119 8.3e-07 59.3 61 54.1
RcHm_v2.0_Chr3g0460131 Rosa chinensis HOM05D006830 ORTHO05D008119 1.1e-06 58.9 64 48.4
Carub.0004s2057 Capsella rubella HOM05D006830 ORTHO05D008119 1.4e-06 58.5 204 31.4
Duzib151G0823 Durio zibethinus HOM05D006830 ORTHO05D008119 1.4e-06 58.5 177 33.3
TAR636G3618 Trochodendron aralioides HOM05D006830 ORTHO05D008119 1.4e-06 58.5 155 32.3
Ciclev10011645m.g Citrus clementina HOM05D006830 ORTHO05D008119 1.8e-06 58.2 216 28.7
DCAR_023967 Daucus carota HOM05D006830 ORTHO05D008119 1.8e-06 58.2 148 33.8
EL10Ac7g17129 Beta vulgaris HOM05D006830 ORTHO05D008119 2.4e-06 57.8 61 49.2
C03p25270 Brassica napus HOM05D006830 ORTHO05D008119 2.4e-06 57.8 203 34.5
BolC3t14921H Brassica oleracea HOM05D006830 ORTHO05D008119 2.4e-06 57.8 203 34.5
CDE04G1359 Ceratophyllum demersum HOM05D006830 ORTHO05D008119 2.4e-06 57.8 225 26.2
GSVIVG01025871001 Vitis vinifera HOM05D006830 ORTHO05D008119 2.4e-06 57.8 160 31.9
HanXRQChr01g0000521 Helianthus annuus HOM05D006830 ORTHO05D008119 3.1e-06 57.4 176 31.2
Oeu026939.4 Olea europaea HOM05D006830 ORTHO05D008119 3.1e-06 57.4 187 28.3
Cfa017009 Carpinus fangiana HOM05D006830 ORTHO05D008119 5.3e-06 56.6 211 27.5
Migut.J00020 Erythranthe guttata HOM05D006830 ORTHO05D008119 7.0e-06 56.2 167 31.1
Sp4g20920 Schrenkiella parvula HOM05D006830 ORTHO05D008119 7.0e-06 56.2 183 35.0
SGA_v2.0_scaffold85G26596 Striga asiatica HOM05D006830 ORTHO05D008119 7.0e-06 56.2 62 51.6


User provided reference genes

Program Settings