Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0331900 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 1.6e-60 236.1 136 100.0
Os09g0326850 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 6.9e-32 141.0 82 87.8
PSO384G2084 Papaver somniferum HOM05D004100 ORTHO05D004781 6.3e-25 117.9 79 75.9
PSO585G0025 Papaver somniferum HOM05D004100 ORTHO05D004781 6.3e-25 117.9 79 75.9
CANSAT35G1936 Cannabis sativa HOM05D004100 ORTHO05D004781 5.3e-24 114.8 79 70.9
CiPaw.02G189000 Carya illinoinensis HOM05D004100 ORTHO05D004781 5.3e-24 114.8 79 74.7
Manes.10G019000 Manihot esculenta HOM05D004100 ORTHO05D004781 9.0e-24 114.0 79 74.7
Manes.08G084000 Manihot esculenta HOM05D004100 ORTHO05D004781 1.5e-23 113.2 79 70.9
CiPaw.01G294400 Carya illinoinensis HOM05D004100 ORTHO05D004781 2.0e-23 112.8 79 73.4
Ciclev10010082m.g Citrus clementina HOM05D004100 ORTHO05D004781 2.0e-23 112.8 79 74.7
Eucgr.E00256 Eucalyptus grandis HOM05D004100 ORTHO05D004781 2.0e-23 112.8 80 70.0
Nn2g11332 Nelumbo nucifera HOM05D004100 ORTHO05D004781 2.0e-23 112.8 79 72.2
Nn6g33749 Nelumbo nucifera HOM05D004100 ORTHO05D004781 2.0e-23 112.8 76 73.7
GSVIVG01016389001 Vitis vinifera HOM05D004100 ORTHO05D004781 2.0e-23 112.8 81 69.1
FvH4_7g23790 Fragaria vesca HOM05D004100 ORTHO05D004781 2.6e-23 112.5 79 73.4
RcHm_v2.0_Chr1g0369131 Rosa chinensis HOM05D004100 ORTHO05D004781 3.4e-23 112.1 79 73.4
GSVIVG01013495001 Vitis vinifera HOM05D004100 ORTHO05D004781 4.5e-23 111.7 79 70.9
COL.COLO4_25607 Corchorus olitorius HOM05D004100 ORTHO05D004781 5.9e-23 111.3 79 70.9
Sed0020785 Sechium edule HOM05D004100 ORTHO05D004781 5.9e-23 111.3 79 72.2
Thecc.10G028200 Theobroma cacao HOM05D004100 ORTHO05D004781 5.9e-23 111.3 79 72.2
Ca_05921_v3 Cicer arietinum L. HOM05D004100 ORTHO05D004781 7.6e-23 110.9 79 70.9
Duzib114G0906 Durio zibethinus HOM05D004100 ORTHO05D004781 7.6e-23 110.9 79 72.2
Eucgr.G03237 Eucalyptus grandis HOM05D004100 ORTHO05D004781 7.6e-23 110.9 81 71.6
Lalb_Chr18g0052831 Lupinus albus HOM05D004100 ORTHO05D004781 7.6e-23 110.9 79 70.9
Migut.F01567 Erythranthe guttata HOM05D004100 ORTHO05D004781 1.0e-22 110.5 79 70.9
Gohir.D04G065900 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.0e-22 110.5 79 72.2
Gorai.012G074300 Gossypium raimondii HOM05D004100 ORTHO05D004781 1.0e-22 110.5 79 72.2
TWI63G1110 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 1.0e-22 110.5 79 70.9
Lalb_Chr15g0084391 Lupinus albus HOM05D004100 ORTHO05D004781 1.3e-22 110.2 79 69.6
Medtr5g081650 Medicago truncatula HOM05D004100 ORTHO05D004781 1.3e-22 110.2 79 69.6
Psat2g035960 Pisum sativum HOM05D004100 ORTHO05D004781 1.7e-22 109.8 79 69.6
TPR.G8047 Trifolium pratense HOM05D004100 ORTHO05D004781 1.7e-22 109.8 79 69.6
Gohir.A05G346300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 2.2e-22 109.4 79 70.9
MSTRG.234 Avicennia marina HOM05D004100 ORTHO05D004781 2.9e-22 109.0 83 68.7
SalBow1G1269 Salvia bowleyana HOM05D004100 ORTHO05D004781 2.9e-22 109.0 80 71.2
Aqoxy2G00841 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 3.8e-22 108.6 78 70.5
Aqoxy6G01946 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 3.8e-22 108.6 79 70.9
Potri.010G194400 Populus trichocarpa HOM05D004100 ORTHO05D004781 3.8e-22 108.6 79 72.2
TAR369G1064 Trochodendron aralioides HOM05D004100 ORTHO05D004781 3.8e-22 108.6 79 70.9
Duzib093G2045 Durio zibethinus HOM05D004100 ORTHO05D004781 5.0e-22 108.2 79 67.1
Potri.008G063000 Populus trichocarpa HOM05D004100 ORTHO05D004781 5.0e-22 108.2 79 70.9
Sabra16G0106200 Salix brachista HOM05D004100 ORTHO05D004781 5.0e-22 108.2 79 64.6
Actinidia07713 Actinidia chinensis HOM05D004100 ORTHO05D004781 6.5e-22 107.8 81 66.7
Glyma.11G226100 Glycine max HOM05D004100 ORTHO05D004781 6.5e-22 107.8 79 69.6
Gohir.A13G017100 Gossypium hirsutum HOM05D004100 ORTHO05D004781 6.5e-22 107.8 79 68.4
Gohir.D13G018200 Gossypium hirsutum HOM05D004100 ORTHO05D004781 6.5e-22 107.8 79 68.4
Sc11g0006410 Simmondsia chinensis HOM05D004100 ORTHO05D004781 6.5e-22 107.8 79 70.9
unitig_0.g234 Utricularia gibba HOM05D004100 ORTHO05D004781 6.5e-22 107.8 79 72.2
Aa31sc250G10 Aethionema arabicum HOM05D004100 ORTHO05D004781 8.5e-22 107.5 79 64.6
Ciclev10013247m.g Citrus clementina HOM05D004100 ORTHO05D004781 8.5e-22 107.5 79 67.1
Duzib128G1203 Durio zibethinus HOM05D004100 ORTHO05D004781 8.5e-22 107.5 73 75.3
Atru.chr8.2126 Acer truncatum HOM05D004100 ORTHO05D004781 1.1e-21 107.1 79 68.4
arahy.Tifrunner.gnm1.ann1.YUBK9J Arachis hypogaea HOM05D004100 ORTHO05D004781 1.1e-21 107.1 79 67.1
CSS0048931 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 1.1e-21 107.1 81 66.7
Phvul.008G227500 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 1.1e-21 107.1 79 68.4
PGR044G2436 Punica granatum HOM05D004100 ORTHO05D004781 1.1e-21 107.1 79 69.6
Sed0001470 Sechium edule HOM05D004100 ORTHO05D004781 1.1e-21 107.1 79 69.6
Actinidia13907 Actinidia chinensis HOM05D004100 ORTHO05D004781 1.4e-21 106.7 80 67.5
Glyma.18G031200 Glycine max HOM05D004100 ORTHO05D004781 1.4e-21 106.7 79 68.4
Manes.07G124300 Manihot esculenta HOM05D004100 ORTHO05D004781 1.4e-21 106.7 79 70.9
BcaB01g03736 Brassica carinata HOM05D000076 ORTHO05D001377 1.9e-21 106.3 79 63.3
BolC3t14861H Brassica oleracea HOM05D000076 ORTHO05D001377 1.9e-21 106.3 79 63.3
BraA03t11338Z Brassica rapa HOM05D000076 ORTHO05D001377 1.9e-21 106.3 79 63.3
Duzib128G0469 Durio zibethinus HOM05D004100 ORTHO05D004781 1.9e-21 106.3 79 65.8
Hma1.2p1_0026F.1_g016830 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 1.9e-21 106.3 79 69.6
Medtr4g019160 Medicago truncatula HOM05D004100 ORTHO05D004781 1.9e-21 106.3 79 67.1
Nn2g13575 Nelumbo nucifera HOM05D004100 ORTHO05D004781 1.9e-21 106.3 77 67.5
Oeu055822.1 Olea europaea HOM05D004100 ORTHO05D004781 1.9e-21 106.3 79 72.2
Sp4g20290 Schrenkiella parvula HOM05D004100 ORTHO05D004781 1.9e-21 106.3 79 63.3
Glyma.02G253300 Glycine max HOM05D004100 ORTHO05D004781 2.5e-21 105.9 79 67.1
THA.LOC104805700 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 2.5e-21 105.9 79 64.6
TAR623G1136 Trochodendron aralioides HOM05D004100 ORTHO05D004781 2.5e-21 105.9 79 68.4
Hma1.2p1_0026F.1_g016860 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 3.2e-21 105.5 79 69.6
Phvul.010G006600 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 3.2e-21 105.5 79 65.8
Prupe.2G244600 Prunus persica HOM05D004100 ORTHO05D004781 3.2e-21 105.5 73 72.6
TWI74G1404 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 3.2e-21 105.5 79 67.1
Thhalv10010931m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 4.2e-21 105.1 83 59.0
Glyma.14G063100 Glycine max HOM05D004100 ORTHO05D004781 4.2e-21 105.1 79 65.8
Gorai.013G020200 Gossypium raimondii HOM05D004100 ORTHO05D004781 4.2e-21 105.1 79 67.1
Gorai.012G110700 Gossypium raimondii HOM05D004100 ORTHO05D004781 5.5e-21 104.8 79 67.1
TWI53G1956 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 5.5e-21 104.8 79 65.8
A04p29120 Brassica napus HOM05D004100 ORTHO05D004781 7.2e-21 104.4 79 62.0
BolC4t28139H Brassica oleracea HOM05D000076 ORTHO05D001377 7.2e-21 104.4 79 62.0
BraA04t18382Z Brassica rapa HOM05D000076 ORTHO05D001377 7.2e-21 104.4 79 62.0
Phvul.001G239400 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 7.2e-21 104.4 79 65.8
Solyc08g082695.1 Solanum lycopersicum HOM05D004100 ORTHO05D004781 7.2e-21 104.4 119 53.8
Sopen08g030920 Solanum pennellii HOM05D004100 ORTHO05D004781 7.2e-21 104.4 119 53.8
Carub.0004s1994 Capsella rubella HOM05D004100 ORTHO05D004781 9.4e-21 104.0 79 60.8
CARHR132530 Cardamine hirsuta HOM05D004100 ORTHO05D004781 9.4e-21 104.0 79 60.8
Thhalv10017760m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 9.4e-21 104.0 79 60.8
Thecc.05G024300 Theobroma cacao HOM05D004100 ORTHO05D004781 9.4e-21 104.0 79 65.8
vmacro16617 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 9.4e-21 104.0 80 62.5
BcaB02g09230 Brassica carinata HOM05D004100 ORTHO05D004781 1.2e-20 103.6 79 62.0
BraA05t19768Z Brassica rapa HOM05D004100 ORTHO05D004781 1.2e-20 103.6 79 62.0
CSS0011416 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 1.2e-20 103.6 79 64.6
CARHR150630 Cardamine hirsuta HOM05D004100 ORTHO05D004781 1.2e-20 103.6 79 60.8
Glyma.01G109600 Glycine max HOM05D004100 ORTHO05D004781 1.2e-20 103.6 83 63.9
Ah.10g030410 Amaranthus hybridus HOM05D004100 ORTHO05D004781 1.6e-20 103.2 79 65.8
arahy.Tifrunner.gnm1.ann1.0J6FIX Arachis hypogaea HOM05D004100 ORTHO05D004781 1.6e-20 103.2 81 64.2
arahy.Tifrunner.gnm1.ann1.7Y0XMR Arachis hypogaea HOM05D004100 ORTHO05D004781 1.6e-20 103.2 84 63.1
CSS0039007 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 1.6e-20 103.2 78 64.1
Carub.0005s2067 Capsella rubella HOM05D004100 ORTHO05D004781 1.6e-20 103.2 79 62.0
Glyma.03G074700 Glycine max HOM05D004100 ORTHO05D004781 1.6e-20 103.2 79 65.8
Lalb_Chr04g0250821 Lupinus albus HOM05D004100 ORTHO05D004781 1.6e-20 103.2 79 63.3
Rhsim09G0171200 Rhododendron simsii HOM05D004100 ORTHO05D004781 1.6e-20 103.2 81 60.5
TPR.G8216 Trifolium pratense HOM05D004100 ORTHO05D004781 1.6e-20 103.2 79 64.6
DCAR_027562 Daucus carota HOM05D004100 ORTHO05D004781 2.1e-20 102.8 79 70.9
Potri.016G109500 Populus trichocarpa HOM05D004100 ORTHO05D004781 2.1e-20 102.8 74 64.9
QL07p036366 Quercus lobata HOM05D004100 ORTHO05D004781 2.1e-20 102.8 78 62.8
AL5G35090 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 2.7e-20 102.4 79 60.8
ECA238G3287 Erigeron canadensis HOM05D004100 ORTHO05D004781 2.7e-20 102.4 79 70.9
Sed0017691 Sechium edule HOM05D004100 ORTHO05D004781 2.7e-20 102.4 79 69.6
AL4G34950 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 3.6e-20 102.1 79 59.5
AT2G37975 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 3.6e-20 102.1 79 59.5
CSS0037675 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 3.6e-20 102.1 75 65.3
CiPaw.10G153500 Carya illinoinensis HOM05D004100 ORTHO05D004781 3.6e-20 102.1 79 65.8
Migut.I01038 Erythranthe guttata HOM05D004100 ORTHO05D004781 3.6e-20 102.1 79 68.4
HanXRQChr07g0202251 Helianthus annuus HOM05D004100 ORTHO05D004781 3.6e-20 102.1 79 69.6
Sabra10G0149500 Salix brachista HOM05D004100 ORTHO05D004781 3.6e-20 102.1 79 68.4
ClCG10G021700 Citrullus lanatus HOM05D004100 ORTHO05D004781 4.6e-20 101.7 79 63.3
vmacro10075 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 4.6e-20 101.7 79 62.0
Aa31sc516G30 Aethionema arabicum HOM05D004100 ORTHO05D004781 6.1e-20 101.3 79 60.8
arahy.Tifrunner.gnm1.ann1.97IM7W Arachis hypogaea HOM05D004100 ORTHO05D004781 6.1e-20 101.3 80 63.8
CARHR163970 Cardamine hirsuta HOM05D004100 ORTHO05D004781 6.1e-20 101.3 79 59.5
CiPaw.09G204500 Carya illinoinensis HOM05D004100 ORTHO05D004781 6.1e-20 101.3 79 63.3
Cc02_g07040 Coffea canephora HOM05D004100 ORTHO05D004781 7.9e-20 100.9 79 67.1
A09p47070 Brassica napus HOM05D004100 ORTHO05D004781 1.0e-19 100.5 79 55.7
Gohir.D04G127700 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.4e-19 100.1 79 67.1
AT3G54085 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 1.8e-19 99.8 79 59.5
SalBow6G6247 Salvia bowleyana HOM05D004100 ORTHO05D004781 1.8e-19 99.8 75 68.0
CDE05G3529 Ceratophyllum demersum HOM05D004100 ORTHO05D004781 2.3e-19 99.4 79 65.8
Lj6g0000528 Lotus japonicus HOM05D004100 ORTHO05D004781 2.3e-19 99.4 79 64.6
MELO3C009201.2 Cucumis melo HOM05D004100 ORTHO05D004781 3.0e-19 99.0 79 60.8
MD04G1144200 Malus domestica HOM05D004100 ORTHO05D004781 3.0e-19 99.0 79 62.0
HPP92_003287 Vanilla planifolia HOM05D004100 ORTHO05D004781 3.0e-19 99.0 64 73.4
CAN.G567.29 Capsicum annuum HOM05D004100 ORTHO05D004781 3.9e-19 98.6 79 67.1
ClCG11G006500 Citrullus lanatus HOM05D004100 ORTHO05D004781 3.9e-19 98.6 74 68.9
Mapoly0015s0116 Marchantia polymorpha HOM05D004100 ORTHO05D004781 5.1e-19 98.2 79 59.5
C08p29320 Brassica napus HOM05D004100 ORTHO05D004781 6.7e-19 97.8 79 54.4
MD12G1158300 Malus domestica HOM05D004100 ORTHO05D004781 6.7e-19 97.8 79 60.8
Lsat_1_v5_gn_1_35860 Lactuca sativa HOM05D004100 ORTHO05D004781 8.8e-19 97.4 76 68.4
Prupe.6G268700 Prunus persica HOM05D004100 ORTHO05D004781 1.5e-18 96.7 79 57.0
PGR031G0718 Punica granatum HOM05D004100 ORTHO05D004781 1.5e-18 96.7 79 62.0
Rhsim03G0139100 Rhododendron simsii HOM05D004100 ORTHO05D004781 1.9e-18 96.3 79 63.3
THA.LOC104816861 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 4.3e-18 95.1 79 58.2
Cfa017271 Carpinus fangiana HOM05D004100 ORTHO05D004781 5.7e-18 94.7 79 60.8
CAN.G689.7 Capsicum annuum HOM05D004100 ORTHO05D004781 7.4e-18 94.4 83 60.2
RcHm_v2.0_Chr3g0464081 Rosa chinensis HOM05D004100 ORTHO05D004781 2.8e-17 92.4 79 55.7
Sed0010532 Sechium edule HOM05D004100 ORTHO05D004781 2.8e-17 92.4 79 57.0
FvH4_6g12280 Fragaria vesca HOM05D004100 ORTHO05D004781 3.7e-17 92.0 79 55.7
Psat7g242160 Pisum sativum HOM05D004100 ORTHO05D004781 3.7e-17 92.0 76 56.6
FAN09G3480 Fragaria x ananassa HOM05D004100 ORTHO05D004781 6.3e-17 91.3 78 55.1
Gohir.A04G087300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.4e-16 90.1 77 59.7
Ah.02g116480 Amaranthus hybridus HOM05D004100 ORTHO05D004781 1.8e-16 89.7 79 60.8
Ah.12g057400 Amaranthus hybridus HOM05D004100 ORTHO05D004781 3.1e-16 89.0 79 60.8
AUR62013833 Chenopodium quinoa HOM05D004100 ORTHO05D004781 3.1e-16 89.0 73 65.8
Prupe.6G268600 Prunus persica HOM05D004100 ORTHO05D004781 1.2e-15 87.0 77 55.8
Atru.chr8.2168 Acer truncatum HOM05D004100 ORTHO05D004781 1.0e-14 84.0 63 68.3
BcaNung06516 Brassica carinata HOM05D004100 ORTHO05D004781 1.0e-14 84.0 79 57.0
ECA247G3878 Erigeron canadensis HOM05D001920 ORTHO05D004895 6.5e-14 81.3 56 73.2
Pp3c5_27310 Physcomitrium patens HOM05D004100 ORTHO05D004781 8.5e-14 80.9 82 50.0
SMO117G0142 Selaginella moellendorffii HOM05D004100 ORTHO05D004781 8.5e-14 80.9 76 51.3
FAN01G2433 Fragaria x ananassa HOM05D004100 ORTHO05D004781 2.5e-13 79.3 57 70.2
FAN03G0295 Fragaria x ananassa HOM05D004100 ORTHO05D004781 4.2e-13 78.6 53 73.6
Pp3c6_2550 Physcomitrium patens HOM05D004100 ORTHO05D004781 4.2e-13 78.6 79 50.6
arahy.Tifrunner.gnm1.ann1.0IJH0T Arachis hypogaea HOM05D004100 ORTHO05D087279 3.0e-11 72.4 54 63.0
arahy.Tifrunner.gnm1.ann1.R21D2Y Arachis hypogaea HOM05D004100 ORTHO05D004781 3.9e-11 72.0 70 48.6
MCO12G437 Micromonas commoda HOM05D004100 ORTHO05D004781 6.7e-11 71.2 80 48.8
FAN06G1577 Fragaria x ananassa HOM05D004100 ORTHO05D004781 5.7e-10 68.2 54 70.4
FAN06G2089 Fragaria x ananassa HOM05D004100 ORTHO05D004781 3.7e-09 65.5 52 71.2
BcaC02g11939 Brassica carinata HOM05D004100 ORTHO05D004781 6.3e-09 64.7 48 58.3
AUR62037182 Chenopodium quinoa HOM05D004100 ORTHO05D004781 6.3e-09 64.7 72 48.6
Actinidia27826 Actinidia chinensis HOM05D004100 ORTHO05D004781 1.4e-08 63.5 43 67.4
Cre06.g299750 Chlamydomonas reinhardtii HOM05D004100 ORTHO05D004781 3.1e-08 62.4 79 41.8
LjContig00141g0009471 Lotus japonicus HOM05D004100 ORTHO05D004781 3.4e-07 58.9 50 54.0
PRCOL_00003613 Prasinoderma coloniale HOM05D004100 ORTHO05D004781 5.9e-07 58.2 80 41.2


User provided reference genes

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