Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 1.9e-123 446.0 255 100.0
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 1.5e-88 330.1 254 68.5
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 5.5e-75 285.0 254 59.1
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 9.5e-75 284.3 265 56.2
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 9.5e-75 284.3 207 72.5
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 2.8e-74 282.7 265 55.8
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 2.8e-74 282.7 253 56.9
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 3.6e-74 282.3 224 68.3
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 8.0e-74 281.2 255 59.6
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 8.0e-74 281.2 245 58.4
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 1.4e-73 280.4 249 58.2
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 4.0e-73 278.9 223 61.0
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 2.0e-72 276.6 209 67.5
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 4.4e-72 275.4 225 66.7
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 7.5e-72 274.6 239 67.8
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 7.5e-72 274.6 237 59.1
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 1.3e-71 273.9 257 60.3
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 2.8e-71 272.7 243 65.8
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 4.9e-71 271.9 265 54.7
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 4.9e-71 271.9 237 58.2
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 1.1e-70 270.8 225 69.8
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 1.4e-70 270.4 250 56.4
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 1.8e-70 270.0 247 61.5
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 2.4e-70 269.6 248 56.9
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 4.1e-70 268.9 232 57.8
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 4.1e-70 268.9 231 62.3
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 5.4e-70 268.5 243 59.3
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 9.2e-70 267.7 232 60.3
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 1.2e-69 267.3 217 66.8
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 2.7e-69 266.2 251 55.0
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 5.9e-69 265.0 260 60.8
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 7.8e-69 264.6 206 61.7
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.3e-68 263.8 223 68.2
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 1.7e-68 263.5 266 53.4
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 2.9e-68 262.7 207 70.0
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 2.9e-68 262.7 207 69.6
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 2.9e-68 262.7 247 59.1
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 5.0e-68 261.9 234 66.7
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 5.0e-68 261.9 263 52.5
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 6.6e-68 261.5 255 54.9
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 6.6e-68 261.5 207 60.4
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 8.6e-68 261.2 200 64.0
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 8.6e-68 261.2 233 57.5
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 3.3e-67 259.2 208 67.3
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 5.6e-67 258.5 225 56.0
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 9.5e-67 257.7 208 59.6
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 9.5e-67 257.7 224 56.7
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 1.2e-66 257.3 208 66.8
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 2.8e-66 256.1 203 67.0
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 2.8e-66 256.1 227 64.8
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 3.6e-66 255.8 250 57.2
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 6.1e-66 255.0 231 65.8
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 8.0e-66 254.6 203 65.5
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 8.0e-66 254.6 232 54.7
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 8.0e-66 254.6 227 56.8
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 8.0e-66 254.6 205 67.8
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 1.4e-65 253.8 206 60.2
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 1.4e-65 253.8 233 54.1
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 1.4e-65 253.8 204 60.3
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 1.5e-64 250.4 248 57.7
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 4.4e-64 248.8 244 62.7
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 9.8e-64 247.7 204 57.8
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 2.2e-63 246.5 227 54.2
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 8.3e-63 244.6 225 54.7
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 1.4e-62 243.8 220 53.6
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 1.4e-62 243.8 218 55.0
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 5.4e-62 241.9 224 62.9
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 5.4e-62 241.9 224 62.9
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 2.7e-61 239.6 199 65.3
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 1.0e-60 237.7 206 53.9
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 3.0e-60 236.1 232 53.0
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 5.0e-60 235.3 224 61.6
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 5.0e-60 235.3 224 61.6
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 1.1e-59 234.2 202 55.4
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 1.5e-59 233.8 276 55.8
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 1.9e-59 233.4 216 56.0
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 3.3e-59 232.6 210 68.1
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 9.5e-59 231.1 202 65.3
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 1.2e-58 230.7 232 51.7
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 1.6e-58 230.3 208 67.8
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 1.6e-58 230.3 247 51.0
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 2.1e-58 229.9 200 56.5
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 6.2e-58 228.4 241 55.6
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 3.1e-57 226.1 256 56.2
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 4.0e-57 225.7 220 51.8
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 2.0e-56 223.4 254 54.7
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 3.4e-56 222.6 246 54.5
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 4.4e-56 222.2 250 56.0
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 4.9e-55 218.8 241 56.0
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 4.9e-55 218.8 241 49.0
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 4.9e-55 218.8 203 49.8
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 6.4e-55 218.4 201 65.2
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 8.3e-55 218.0 244 55.3
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 8.3e-55 218.0 240 55.8
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 8.3e-55 218.0 202 52.5
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 8.3e-55 218.0 204 60.8
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 1.4e-54 217.2 247 54.3
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 1.9e-54 216.9 241 55.6
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 5.4e-54 215.3 248 50.8
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 1.2e-53 214.2 206 55.3
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.6e-53 213.8 248 52.4
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 1.6e-53 213.8 248 52.4
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 2.1e-53 213.4 193 53.9
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 2.7e-53 213.0 253 45.8
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 3.0e-52 209.5 264 52.7
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 5.1e-52 208.8 250 55.6
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 5.1e-52 208.8 250 55.6
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 5.1e-52 208.8 253 53.0
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 6.6e-52 208.4 241 53.9
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.5e-51 207.2 208 59.6
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.5e-51 207.2 208 59.6
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 1.5e-51 207.2 208 59.6
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 2.5e-51 206.5 240 52.5
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 4.3e-51 205.7 208 59.1
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 5.6e-51 205.3 203 57.6
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 9.5e-51 204.5 242 53.3
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 3.1e-49 199.5 197 50.3
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 4.0e-49 199.1 220 49.1
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 6.8e-49 198.4 234 47.4
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 2.0e-48 196.8 152 71.1
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 5.8e-48 195.3 181 48.6
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 9.9e-48 194.5 199 49.7
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.3e-47 194.1 213 46.5
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 2.9e-47 193.0 213 46.0
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 1.6e-45 187.2 147 59.9
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 3.5e-45 186.0 199 46.7
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 1.0e-44 184.5 152 75.7
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 1.7e-44 183.7 181 59.1
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 5.1e-44 182.2 203 50.7
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 6.6e-44 181.8 194 47.9
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 6.6e-44 181.8 152 55.9
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 2.5e-43 179.9 206 45.6
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 2.6e-40 169.9 222 52.7
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 9.9e-40 167.9 214 43.5
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 1.7e-39 167.2 199 40.2
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 6.4e-39 165.2 202 49.0
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 6.4e-39 165.2 202 49.0
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 4.2e-38 162.5 216 53.2
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 3.9e-36 156.0 128 62.5
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 5.1e-36 155.6 229 41.9
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 6.6e-36 155.2 196 42.3
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 9.6e-35 151.4 196 40.8
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 1.6e-34 150.6 194 38.7
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 2.1e-34 150.2 238 37.4
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 6.2e-34 148.7 223 37.7
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 8.1e-34 148.3 202 38.6
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 2.4e-33 146.7 198 37.4
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 2.4e-33 146.7 198 37.4
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 9.0e-33 144.8 228 38.2
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 2.0e-32 143.7 198 39.4
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 2.6e-32 143.3 189 37.0
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 1.7e-31 140.6 236 36.4
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 3.8e-31 139.4 198 37.4
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 4.9e-31 139.0 156 44.2
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 2.7e-29 133.3 130 55.4
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 9.6e-27 124.8 197 35.0
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 3.4e-24 116.3 126 48.4
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 4.6e-21 105.9 164 31.1
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 2.3e-20 103.6 210 33.8
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 6.7e-20 102.1 164 30.5
Thecc.01G291900 Theobroma cacao HOM05D004265 ORTHO05D005175 6.9e-17 92.0 100 50.0
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 7.6e-16 88.6 67 61.2
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 2.5e-14 83.6 67 53.7
arahy.Tifrunner.gnm1.ann1.F5CMD4 Arachis hypogaea HOM05D004265 ORTHO05D005175 1.9e-11 73.9 157 29.9
Lsat_1_v5_gn_6_35861 Lactuca sativa HOM05D004265 ORTHO05D005175 1.9e-11 73.9 63 49.2
Lsat_1_v5_gn_9_123981 Lactuca sativa HOM05D001336 ORTHO05D001211 1.6e-10 70.9 77 46.8
QL03p013641 Quercus lobata HOM05D004265 ORTHO05D005175 2.8e-10 70.1 76 46.1
Duzib133G1105 Durio zibethinus HOM05D004265 ORTHO05D045180 6.3e-10 68.9 218 24.3
Thecc.01G313500 Theobroma cacao HOM05D004265 ORTHO05D045180 2.0e-08 63.9 232 25.4
CiPaw.14G122400 Carya illinoinensis HOM05D004265 ORTHO05D005175 1.7e-07 60.8 45 62.2
COL.COLO4_28325 Corchorus olitorius HOM05D004265 ORTHO05D005175 9.3e-06 55.1 41 61.0


User provided reference genes

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