Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0305200 Oryza sativa ssp. japonica HOM05D006641 ORTHO05D007573 1.9e-97 359.4 210 100.0
Zm00001eb396340 Zea mays HOM05D006641 ORTHO05D007573 6.2e-56 221.5 211 69.7
Zm00001eb014520 Zea mays HOM05D006641 ORTHO05D007573 4.9e-45 185.3 205 65.4
CsaV3_7G029900 Cucumis sativus L. HOM05D006641 ORTHO05D007573 2.1e-19 100.1 217 35.9
MELO3C015931.2 Cucumis melo HOM05D006641 ORTHO05D007573 6.1e-19 98.6 217 36.9
Gohir.D07G132300 Gossypium hirsutum HOM05D006641 ORTHO05D007573 1.0e-18 97.8 229 33.6
Gorai.001G143700 Gossypium raimondii HOM05D006641 ORTHO05D007573 1.0e-18 97.8 229 33.6
ClCG09G005170 Citrullus lanatus HOM05D006641 ORTHO05D007573 1.8e-18 97.1 215 35.3
Gohir.A07G127900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 1.8e-18 97.1 229 33.6
Duzib138G1609 Durio zibethinus HOM05D006641 ORTHO05D007573 1.1e-17 94.4 227 33.0
Sed0015554 Sechium edule HOM05D006641 ORTHO05D007573 4.3e-17 92.4 215 36.7
Sabra02G0160400 Salix brachista HOM05D006641 ORTHO05D007573 5.7e-17 92.0 218 34.9
Duzib211G0496 Durio zibethinus HOM05D006641 ORTHO05D007573 7.4e-17 91.7 213 31.9
Aqoxy2G01829 Aquilegia oxysepala HOM05D006641 ORTHO05D007573 9.7e-17 91.3 201 34.8
MBI19_g24818_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 1.7e-16 90.5 196 35.2
Thecc.01G311800 Theobroma cacao HOM05D006641 ORTHO05D007573 2.2e-16 90.1 222 34.7
Nn3g21666 Nelumbo nucifera HOM05D006641 ORTHO05D007573 3.7e-16 89.4 216 34.7
VMungo0007G0001 Vigna mungo HOM05D006641 ORTHO05D007573 3.7e-16 89.4 218 32.1
Rhsim13G0005400 Rhododendron simsii HOM05D006641 ORTHO05D007573 4.8e-16 89.0 222 33.3
Atru.chr5.1033 Acer truncatum HOM05D006641 ORTHO05D007573 6.3e-16 88.6 220 35.0
CiPaw.07G116300 Carya illinoinensis HOM05D006641 ORTHO05D007573 6.3e-16 88.6 203 33.0
Glyma.02G013200 Glycine max HOM05D006641 ORTHO05D007573 6.3e-16 88.6 197 32.0
Lalb_Chr02g0146781 Lupinus albus HOM05D006641 ORTHO05D007573 6.3e-16 88.6 197 34.5
Oeu008464.1 Olea europaea HOM05D006641 ORTHO05D007573 6.3e-16 88.6 220 33.6
Manes.05G002600 Manihot esculenta HOM05D006641 ORTHO05D007573 8.2e-16 88.2 225 32.4
MBI18_g28444_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 1.1e-15 87.8 223 34.5
PGSC0003DMG400009037 Solanum tuberosum HOM05D006641 ORTHO05D007573 1.4e-15 87.4 220 31.4
CSS0030498 Camellia sinensis var. sinensis HOM05D006641 ORTHO05D007573 2.4e-15 86.7 219 32.4
BcaC04g24036 Brassica carinata HOM05D001136 ORTHO05D007573 3.1e-15 86.3 227 32.2
BolC9t53098H Brassica oleracea HOM05D001136 ORTHO05D007573 3.1e-15 86.3 227 32.2
C09p01650 Brassica napus HOM05D001136 ORTHO05D007573 4.1e-15 85.9 227 32.2
Cfa005814 Carpinus fangiana HOM05D006641 ORTHO05D007573 5.3e-15 85.5 202 36.6
A09p01550 Brassica napus HOM05D006641 ORTHO05D007573 6.9e-15 85.1 223 32.3
Duzib133G1491 Durio zibethinus HOM05D006641 ORTHO05D007573 6.9e-15 85.1 220 31.4
TWI36G0114 Tripterygium wilfordii HOM05D006641 ORTHO05D007573 6.9e-15 85.1 201 33.8
CARHR249590 Cardamine hirsuta HOM05D006641 ORTHO05D007573 9.1e-15 84.7 213 33.3
Medtr1g087230 Medicago truncatula HOM05D006641 ORTHO05D007573 9.1e-15 84.7 196 33.2
Solyc01g079550.2 Solanum lycopersicum HOM05D006641 ORTHO05D007573 9.1e-15 84.7 219 30.1
Sopen01g031320 Solanum pennellii HOM05D006641 ORTHO05D007573 1.2e-14 84.3 219 30.1
ATR0706G193 Amborella trichopoda HOM05D006641 ORTHO05D007573 1.5e-14 84.0 214 32.7
AT4G02090 Arabidopsis thaliana HOM05D006641 ORTHO05D007573 1.5e-14 84.0 211 32.7
Gohir.D12G129400 Gossypium hirsutum HOM05D006641 ORTHO05D007573 1.5e-14 84.0 197 32.5
Gorai.008G140500 Gossypium raimondii HOM05D006641 ORTHO05D007573 1.5e-14 84.0 197 32.5
Nitab4.5_0001301g0080 Nicotiana tabacum HOM05D006641 ORTHO05D007573 1.5e-14 84.0 223 32.3
Potri.002G196900 Populus trichocarpa HOM05D006641 ORTHO05D007573 1.5e-14 84.0 220 34.5
Gorai.004G144000 Gossypium raimondii HOM05D006641 ORTHO05D007573 2.6e-14 83.2 232 29.7
Gohir.D08G139900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 3.4e-14 82.8 232 29.7
QL12p020167 Quercus lobata HOM05D006641 ORTHO05D007573 3.4e-14 82.8 229 32.3
Ah.11g049320 Amaranthus hybridus HOM05D000446 ORTHO05D000321 4.5e-14 82.4 211 30.3
BraA09t35814Z Brassica rapa HOM05D001136 ORTHO05D007573 4.5e-14 82.4 227 32.2
Phvul.007G214900 Phaseolus vulgaris HOM05D006641 ORTHO05D007573 4.5e-14 82.4 214 31.8
Sabra14G0090500 Salix brachista HOM05D006641 ORTHO05D007573 4.5e-14 82.4 218 34.4
vmacro02409 Vaccinium macrocarpon HOM05D006641 ORTHO05D007573 4.5e-14 82.4 219 33.8
AL6G51140 Arabidopsis lyrata HOM05D006641 ORTHO05D007573 5.9e-14 82.0 209 34.4
Psat6g162160 Pisum sativum HOM05D006641 ORTHO05D007573 5.9e-14 82.0 216 36.6
SalBow3G3599 Salvia bowleyana HOM05D006641 ORTHO05D007573 1.0e-13 81.3 208 31.7
TAR362G0542 Trochodendron aralioides HOM05D006641 ORTHO05D007573 1.0e-13 81.3 213 33.8
PGR119G1902 Punica granatum HOM05D006641 ORTHO05D007573 1.3e-13 80.9 228 34.2
Phvul.001G212200 Phaseolus vulgaris HOM05D006641 ORTHO05D007573 2.2e-13 80.1 210 32.4
AUR62011824 Chenopodium quinoa HOM05D006641 ORTHO05D007573 2.9e-13 79.7 213 31.0
Lalb_Chr15g0078301 Lupinus albus HOM05D006641 ORTHO05D007573 2.9e-13 79.7 197 29.9
Gohir.A08G119133 Gossypium hirsutum HOM05D006641 ORTHO05D007573 3.8e-13 79.3 232 28.9
TPR.G19761 Trifolium pratense HOM05D006641 ORTHO05D007573 3.8e-13 79.3 220 32.7
Glyma.10G013800 Glycine max HOM05D006641 ORTHO05D007573 6.5e-13 78.6 217 31.3
Lj5g0026629 Lotus japonicus HOM05D006641 ORTHO05D007573 8.5e-13 78.2 220 33.2
VMungo1383G0778 Vigna mungo HOM05D006641 ORTHO05D007573 1.1e-12 77.8 211 32.7
CANSAT25G1473 Cannabis sativa HOM05D006641 ORTHO05D007573 1.4e-12 77.4 218 31.7
Cpa.g.sc18.26 Carica papaya HOM05D006641 ORTHO05D007573 1.4e-12 77.4 220 30.5
AUR62024668 Chenopodium quinoa HOM05D006641 ORTHO05D007573 1.9e-12 77.0 216 30.1
Migut.D00088 Erythranthe guttata HOM05D006641 ORTHO05D007573 1.9e-12 77.0 208 38.5
Glyma.19G215600 Glycine max HOM05D006641 ORTHO05D007573 1.9e-12 77.0 223 31.8
Medtr7g109410 Medicago truncatula HOM05D006641 ORTHO05D007573 1.9e-12 77.0 222 32.4
Prupe.8G270900 Prunus persica HOM05D006641 ORTHO05D007573 1.9e-12 77.0 214 32.7
Sp6g01980 Schrenkiella parvula HOM05D006641 ORTHO05D007573 1.9e-12 77.0 219 34.2
THA.LOC104801302 Tarenaya hassleriana HOM05D006641 ORTHO05D007573 1.9e-12 77.0 227 30.0
Lj1g0024392 Lotus japonicus HOM05D006641 ORTHO05D007573 4.2e-12 75.9 213 32.4
Psat3g020560 Pisum sativum HOM05D006641 ORTHO05D007573 4.2e-12 75.9 222 31.5
Ca_10290_v3 Cicer arietinum L. HOM05D006641 ORTHO05D007573 5.5e-12 75.5 217 31.8
Ca_30054_v3 Cicer arietinum L. HOM05D006641 ORTHO05D007573 5.5e-12 75.5 217 31.8
Gohir.A12G125900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 5.5e-12 75.5 208 29.3
Hma1.2p1_0486F.1_g163110 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 5.5e-12 75.5 197 29.9
Hma1.2p1_0486F.1_g163121 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 5.5e-12 75.5 197 29.9
Manes.01G226800 Manihot esculenta HOM05D006641 ORTHO05D007573 5.5e-12 75.5 222 31.1
PSO210G6531 Papaver somniferum HOM05D006641 ORTHO05D007573 5.5e-12 75.5 213 31.0
COL.COLO4_23247 Corchorus olitorius HOM05D006641 ORTHO05D007573 7.2e-12 75.1 224 31.2
Cc01_g21330 Coffea canephora HOM05D006641 ORTHO05D007573 9.4e-12 74.7 229 30.1
Thhalv10029320m.g Eutrema salsugineum HOM05D006641 ORTHO05D007573 9.4e-12 74.7 220 33.2
arahy.Tifrunner.gnm1.ann1.DB9XMS Arachis hypogaea HOM05D006641 ORTHO05D007573 1.2e-11 74.3 222 31.5
Glyma.03G218800 Glycine max HOM05D006641 ORTHO05D007573 1.2e-11 74.3 224 30.8
BcaB01g02078 Brassica carinata HOM05D006641 ORTHO05D007573 1.6e-11 73.9 211 32.7
DCAR_002902 Daucus carota HOM05D006641 ORTHO05D007573 1.6e-11 73.9 211 30.3
FAN13G0974 Fragaria x ananassa HOM05D001136 ORTHO05D007573 1.6e-11 73.9 220 33.6
Nitab4.5_0008979g0010 Nicotiana tabacum HOM05D006641 ORTHO05D007573 1.6e-11 73.9 220 31.4
EL10As5g23515 Beta vulgaris HOM05D006641 ORTHO05D007573 2.1e-11 73.6 217 30.4
PSO170G1046 Papaver somniferum HOM05D006641 ORTHO05D007573 2.1e-11 73.6 231 28.6
Dinv33109 Davidia involucrata HOM05D006641 ORTHO05D007573 2.7e-11 73.2 224 30.8
MD03G1296400 Malus domestica HOM05D006641 ORTHO05D007573 2.7e-11 73.2 217 32.7
Peaxi162Scf00691g00003 Petunia axillaris HOM05D006641 ORTHO05D007573 2.7e-11 73.2 217 29.5
Potri.014G122100 Populus trichocarpa HOM05D006641 ORTHO05D007573 3.6e-11 72.8 213 31.9
HPP92_018375 Vanilla planifolia HOM05D006641 ORTHO05D007573 3.6e-11 72.8 211 31.3
Aa31LG5G1730 Aethionema arabicum HOM05D006641 ORTHO05D007573 4.7e-11 72.4 221 31.2
FAN04G2480 Fragaria x ananassa HOM05D001136 ORTHO05D007573 4.7e-11 72.4 220 32.7
PSO357G0224 Papaver somniferum HOM05D006641 ORTHO05D007573 4.7e-11 72.4 231 28.6
DCAR_005769 Daucus carota HOM05D006641 ORTHO05D007573 7.9e-11 71.6 214 29.9
Carub.0006s3513 Capsella rubella HOM05D006641 ORTHO05D007573 1.0e-10 71.2 231 32.0
Ciclev10021856m.g Citrus clementina HOM05D006641 ORTHO05D007573 1.0e-10 71.2 202 32.7
PSO761G0656 Papaver somniferum HOM05D006641 ORTHO05D007573 2.3e-10 70.1 213 31.0
Lsat_1_v5_gn_9_2880 Lactuca sativa HOM05D006641 ORTHO05D007573 5.1e-10 68.9 216 31.9
MD11G1315800 Malus domestica HOM05D006641 ORTHO05D007573 5.1e-10 68.9 216 31.5
SGA_v2.0_scaffold376G50279 Striga asiatica HOM05D006641 ORTHO05D007573 5.1e-10 68.9 224 29.5
Eucgr.H01054 Eucalyptus grandis HOM05D006641 ORTHO05D007573 2.0e-09 67.0 194 33.5
Hma1.2p1_0212F.1_g090010 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 2.6e-09 66.6 217 29.0
HanXRQChr15g0465011 Helianthus annuus HOM05D006641 ORTHO05D007573 1.7e-08 63.9 213 28.2
Haze_05028 Corylus avellana HOM05D006641 ORTHO05D007573 2.8e-08 63.2 199 31.7
TAR589G0002 Trochodendron aralioides HOM05D006641 ORTHO05D007573 8.2e-08 61.6 175 32.6
TAR633G2793 Trochodendron aralioides HOM05D006641 ORTHO05D007573 8.2e-08 61.6 175 32.6
ECA247G2557 Erigeron canadensis HOM05D006641 ORTHO05D007573 1.1e-07 61.2 199 29.1
Os01g0686000 Oryza sativa ssp. japonica HOM05D001935 ORTHO05D001700 1.8e-07 60.5 117 39.3
arahy.Tifrunner.gnm1.ann1.Q9I7GX Arachis hypogaea HOM05D006641 ORTHO05D007573 1.2e-06 57.8 109 38.5
Actinidia27614 Actinidia chinensis HOM05D006641 ORTHO05D007573 2.0e-06 57.0 192 36.5
MSTRG.15313 Avicennia marina HOM05D001935 ORTHO05D001700 3.5e-06 56.2 96 39.6
Zm00001eb156470 Zea mays HOM05D001935 ORTHO05D001700 5.9e-06 55.5 131 35.1
Zm00001eb440490 Zea mays HOM05D001935 ORTHO05D001700 5.9e-06 55.5 131 35.1


User provided reference genes

Program Settings