Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 9.3e-116 420.2 215 100.0
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 1.0e-53 214.2 209 62.7
Os01g0861400 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 1.2e-46 190.7 139 78.4
Zm00001eb396420 Zea mays HOM05D003790 ORTHO05D004481 3.6e-43 179.1 207 57.0
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 7.1e-23 111.7 202 40.1
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 4.6e-22 109.0 201 41.8
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-21 107.5 211 38.9
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 1.7e-21 107.1 213 39.9
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 1.7e-21 107.1 202 37.1
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 9.6e-20 101.3 205 38.0
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 4.8e-19 99.0 203 37.4
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 8.1e-19 98.2 207 36.7
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 8.1e-19 98.2 200 36.0
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 1.8e-18 97.1 207 40.1
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 1.8e-18 97.1 201 36.3
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.4e-18 96.7 209 37.3
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 3.1e-18 96.3 205 37.6
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.9e-18 95.1 204 35.3
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.9e-18 95.1 204 35.8
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 6.9e-18 95.1 211 37.4
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 6.9e-18 95.1 197 37.6
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 9.0e-18 94.7 202 37.6
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 1.2e-17 94.4 218 36.7
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.2e-17 94.4 218 36.7
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 1.5e-17 94.0 205 36.6
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 3.4e-17 92.8 214 35.0
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 3.4e-17 92.8 211 34.6
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 4.5e-17 92.4 218 36.2
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 4.5e-17 92.4 199 38.2
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 4.5e-17 92.4 211 36.5
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 9.9e-17 91.3 203 36.0
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 9.9e-17 91.3 197 37.6
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.3e-16 90.9 211 37.4
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 2.2e-16 90.1 202 36.6
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.2e-16 90.1 210 35.2
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.2e-16 90.1 202 36.1
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 2.2e-16 90.1 206 40.3
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 2.2e-16 90.1 208 35.1
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 2.9e-16 89.7 185 38.4
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 2.9e-16 89.7 213 36.2
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 2.9e-16 89.7 204 34.8
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 3.8e-16 89.4 202 36.1
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 6.4e-16 88.6 197 34.5
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 8.4e-16 88.2 205 36.1
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 8.4e-16 88.2 215 33.5
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 1.1e-15 87.8 203 34.5
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.1e-15 87.8 200 37.0
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.1e-15 87.8 205 34.1
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.4e-15 87.4 208 34.1
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.4e-15 87.4 202 35.6
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.9e-15 87.0 202 35.6
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.4e-15 86.7 202 35.6
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 3.2e-15 86.3 200 37.5
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 3.2e-15 86.3 198 37.4
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 4.2e-15 85.9 210 34.8
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 7.1e-15 85.1 205 33.7
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 7.1e-15 85.1 217 33.6
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 9.3e-15 84.7 234 35.0
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 9.3e-15 84.7 197 34.0
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 1.2e-14 84.3 215 35.3
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.6e-14 84.0 201 36.3
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 1.6e-14 84.0 200 35.5
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 1.6e-14 84.0 199 37.7
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 2.7e-14 83.2 205 35.1
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 3.5e-14 82.8 206 35.4
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.5e-14 82.8 199 33.2
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 6.0e-14 82.0 195 34.4
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 6.0e-14 82.0 195 34.9
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 7.9e-14 81.6 210 32.4
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 1.0e-13 81.3 200 35.0
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 1.3e-13 80.9 199 34.2
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 1.8e-13 80.5 207 33.8
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 1.8e-13 80.5 203 33.0
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 1.8e-13 80.5 199 34.2
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 2.3e-13 80.1 201 32.3
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 2.3e-13 80.1 204 37.3
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 2.3e-13 80.1 210 34.8
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 3.0e-13 79.7 203 33.5
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 3.0e-13 79.7 205 33.7
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 3.0e-13 79.7 211 32.2
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 3.9e-13 79.3 203 33.0
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 3.9e-13 79.3 202 34.2
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 3.9e-13 79.3 197 33.0
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 3.9e-13 79.3 208 35.1
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 3.9e-13 79.3 211 31.8
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 5.1e-13 79.0 201 33.3
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 5.1e-13 79.0 204 34.3
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 6.7e-13 78.6 199 33.2
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 6.7e-13 78.6 200 34.0
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 8.7e-13 78.2 191 33.5
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 8.7e-13 78.2 194 35.1
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 8.7e-13 78.2 196 36.2
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 1.1e-12 77.8 197 31.5
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 1.5e-12 77.4 196 34.2
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 1.9e-12 77.0 202 32.2
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 1.9e-12 77.0 204 31.9
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 1.9e-12 77.0 203 32.0
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 1.9e-12 77.0 204 31.9
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 1.9e-12 77.0 199 33.7
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 2.5e-12 76.6 205 33.7
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 2.5e-12 76.6 204 33.3
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 2.5e-12 76.6 211 33.2
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 3.3e-12 76.3 194 34.0
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 4.3e-12 75.9 204 31.9
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 4.3e-12 75.9 204 31.9
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 4.3e-12 75.9 194 35.6
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 4.3e-12 75.9 202 32.2
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 4.3e-12 75.9 192 34.4
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 5.6e-12 75.5 195 31.8
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 9.6e-12 74.7 198 31.8
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 9.6e-12 74.7 206 33.5
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 9.6e-12 74.7 196 32.1
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.3e-11 74.3 204 33.3
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 1.3e-11 74.3 197 34.0
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 1.6e-11 73.9 196 34.2
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 2.1e-11 73.6 204 32.8
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 2.1e-11 73.6 204 32.8
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 2.1e-11 73.6 204 32.8
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 2.8e-11 73.2 196 29.1
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.6e-11 72.8 199 31.7
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 3.6e-11 72.8 202 34.2
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 4.8e-11 72.4 198 29.8
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 4.8e-11 72.4 202 32.7
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.2e-11 72.0 189 34.4
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 8.1e-11 71.6 189 34.9
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 8.1e-11 71.6 196 31.1
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 1.1e-10 71.2 189 32.8
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 1.4e-10 70.9 204 30.4
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 1.8e-10 70.5 189 33.9
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 3.1e-10 69.7 201 29.4
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 3.1e-10 69.7 202 30.7
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.1e-10 69.7 194 34.5
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 4.0e-10 69.3 190 33.2
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 4.0e-10 69.3 158 38.0
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 5.3e-10 68.9 202 32.7
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 6.9e-10 68.6 197 33.5
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 1.2e-09 67.8 200 28.5
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 2.0e-09 67.0 188 35.1
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 2.6e-09 66.6 198 30.3
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 3.4e-09 66.2 212 33.0
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 4.5e-09 65.9 145 34.5
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 1.3e-08 64.3 189 29.6
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 2.2e-08 63.5 145 33.1
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 2.9e-08 63.2 202 32.7
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.8e-08 62.8 197 29.4
HPP92_011875 Vanilla planifolia HOM05D003790 ORTHO05D004481 3.8e-08 62.8 188 31.9
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 4.9e-08 62.4 191 33.5
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 6.4e-08 62.0 188 29.3
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 1.9e-07 60.5 208 32.2
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 1.9e-07 60.5 199 30.2
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 2.4e-07 60.1 186 29.0
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 3.2e-07 59.7 205 25.9
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 1.2e-06 57.8 193 31.1
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 3.5e-06 56.2 193 30.1
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.6e-06 55.8 38 65.8
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 6.0e-06 55.5 122 36.1
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 6.0e-06 55.5 193 29.5
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 6.0e-06 55.5 206 27.7
HPP92_025188 Vanilla planifolia HOM05D003790 ORTHO05D004481 6.0e-06 55.5 198 30.3


User provided reference genes

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