Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0293100 Oryza sativa ssp. japonica HOM05D007292 ORTHO05D009084 4.0e-107 391.7 245 100.0
Zm00001eb013500 Zea mays HOM05D007292 ORTHO05D009084 2.4e-51 206.5 276 53.6
PGR044G1044 Punica granatum HOM05D007292 ORTHO05D009084 7.3e-32 141.7 139 59.0
Manes.07G131600 Manihot esculenta HOM05D007292 ORTHO05D009084 9.5e-32 141.4 139 59.7
Actinidia00958 Actinidia chinensis HOM05D007292 ORTHO05D009084 2.1e-31 140.2 135 58.5
Actinidia13950 Actinidia chinensis HOM05D007292 ORTHO05D009084 2.1e-31 140.2 135 58.5
Potri.010G186800 Populus trichocarpa HOM05D007292 ORTHO05D009084 3.6e-31 139.4 136 59.6
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 6.2e-31 138.7 139 59.0
Eucgr.J00191 Eucalyptus grandis HOM05D007292 ORTHO05D009084 6.2e-31 138.7 139 58.3
Peaxi162Scf00484g00003 Petunia axillaris HOM05D007292 ORTHO05D009084 6.2e-31 138.7 135 58.5
THA.LOC104824327 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 8.1e-31 138.3 134 61.2
Cfa001300 Carpinus fangiana HOM05D007292 ORTHO05D009084 1.8e-30 137.1 139 58.3
CiPaw.01G300300 Carya illinoinensis HOM05D007292 ORTHO05D009084 2.3e-30 136.7 139 56.8
Thecc.10G013900 Theobroma cacao HOM05D007292 ORTHO05D009084 2.3e-30 136.7 139 59.0
GSVIVG01032790001 Vitis vinifera HOM05D007292 ORTHO05D009084 3.1e-30 136.3 139 57.6
Nitab4.5_0002701g0020 Nicotiana tabacum HOM05D007292 ORTHO05D009084 4.0e-30 136.0 135 57.8
Potri.008G070700 Populus trichocarpa HOM05D007292 ORTHO05D009084 4.0e-30 136.0 136 56.6
Duzib114G0074 Durio zibethinus HOM05D007292 ORTHO05D009084 5.2e-30 135.6 135 59.3
Cc08_g07220 Coffea canephora HOM05D007292 ORTHO05D009084 6.8e-30 135.2 135 57.8
HanXRQChr14g0459531 Helianthus annuus HOM05D007292 ORTHO05D009084 8.9e-30 134.8 136 57.4
arahy.Tifrunner.gnm1.ann1.W7USAB Arachis hypogaea HOM05D007292 ORTHO05D009084 1.2e-29 134.4 139 57.6
Aa31LG10G10950 Aethionema arabicum HOM05D007292 ORTHO05D009084 1.5e-29 134.0 133 57.9
Nitab4.5_0000487g0050 Nicotiana tabacum HOM05D007292 ORTHO05D009084 1.5e-29 134.0 135 57.0
arahy.Tifrunner.gnm1.ann1.RI3S0A Arachis hypogaea HOM05D007292 ORTHO05D009084 2.0e-29 133.7 139 57.6
Ciclev10032544m.g Citrus clementina HOM05D007292 ORTHO05D009084 2.6e-29 133.3 139 59.0
TWI53G0916 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 2.6e-29 133.3 139 56.1
AL5G37290 Arabidopsis lyrata HOM05D007292 ORTHO05D009084 3.4e-29 132.9 133 56.4
AT3G56010 Arabidopsis thaliana HOM05D007292 ORTHO05D009084 3.4e-29 132.9 133 56.4
C04p36460 Brassica napus HOM05D007292 ORTHO05D009084 4.4e-29 132.5 184 46.7
BolC4t25149H Brassica oleracea HOM05D007292 ORTHO05D009084 4.4e-29 132.5 184 46.7
Carub.0005s2275 Capsella rubella HOM05D007292 ORTHO05D009084 4.4e-29 132.5 133 56.4
THA.LOC104811239 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 4.4e-29 132.5 139 55.4
ATR0681G254 Amborella trichopoda HOM05D007292 ORTHO05D009084 7.5e-29 131.7 137 57.7
CSS0010989 Camellia sinensis var. sinensis HOM05D007292 ORTHO05D009084 7.5e-29 131.7 135 59.3
CARHR166090 Cardamine hirsuta HOM05D007292 ORTHO05D009084 7.5e-29 131.7 133 55.6
SalBow5G0252 Salvia bowleyana HOM05D007292 ORTHO05D009084 9.9e-29 131.3 135 58.5
BcaC02g09799 Brassica carinata HOM05D007292 ORTHO05D009084 1.3e-28 131.0 184 46.2
Hund13879 Selenicereus undatus HOM05D007292 ORTHO05D009084 1.3e-28 131.0 140 55.0
PGSC0003DMG400027726 Solanum tuberosum HOM05D007292 ORTHO05D009084 1.3e-28 131.0 135 54.8
BcaB01g00041 Brassica carinata HOM05D007292 ORTHO05D009084 1.7e-28 130.6 133 55.6
A09p48960 Brassica napus HOM05D007292 ORTHO05D009084 1.7e-28 130.6 133 55.6
C08p31330 Brassica napus HOM05D007292 ORTHO05D009084 1.7e-28 130.6 133 55.6
BolC8t50754H Brassica oleracea HOM05D007292 ORTHO05D009084 1.7e-28 130.6 133 55.6
BraA04t16126Z Brassica rapa HOM05D007292 ORTHO05D009084 1.7e-28 130.6 133 55.6
BraA09t40351Z Brassica rapa HOM05D007292 ORTHO05D009084 1.7e-28 130.6 133 55.6
Lalb_Chr08g0231651 Lupinus albus HOM05D007292 ORTHO05D009084 1.7e-28 130.6 139 55.4
Sp5g06520 Schrenkiella parvula HOM05D007292 ORTHO05D009084 1.7e-28 130.6 133 55.6
MELO3C018364.2 Cucumis melo HOM05D007292 ORTHO05D009084 2.2e-28 130.2 135 55.6
QL08p063404 Quercus lobata HOM05D007292 ORTHO05D009084 2.2e-28 130.2 138 53.6
Rhsim09G0178500 Rhododendron simsii HOM05D007292 ORTHO05D009084 2.2e-28 130.2 133 57.1
SalBow5G4600 Salvia bowleyana HOM05D007292 ORTHO05D009084 2.2e-28 130.2 135 57.8
Solyc03g095990.1 Solanum lycopersicum HOM05D007292 ORTHO05D009084 2.9e-28 129.8 133 54.9
Sopen03g026090 Solanum pennellii HOM05D007292 ORTHO05D009084 2.9e-28 129.8 133 54.9
TAR633G2478 Trochodendron aralioides HOM05D007292 ORTHO05D009084 2.9e-28 129.8 180 47.2
Dinv10605 Davidia involucrata HOM05D007292 ORTHO05D009084 3.7e-28 129.4 136 58.1
Thhalv10006239m.g Eutrema salsugineum HOM05D007292 ORTHO05D009084 3.7e-28 129.4 133 54.9
Aqoxy6G01833 Aquilegia oxysepala HOM05D007292 ORTHO05D009084 4.9e-28 129.0 133 57.1
A04p04080 Brassica napus HOM05D007292 ORTHO05D009084 8.3e-28 128.3 133 54.9
Migut.F01485 Erythranthe guttata HOM05D007292 ORTHO05D009084 8.3e-28 128.3 136 55.1
Gohir.A05G330800 Gossypium hirsutum HOM05D007292 ORTHO05D009084 8.3e-28 128.3 139 55.4
Sabra08G0052000 Salix brachista HOM05D007292 ORTHO05D009084 8.3e-28 128.3 136 54.4
TWI09G0172 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 1.1e-27 127.9 136 55.1
vmacro10031 Vaccinium macrocarpon HOM05D007292 ORTHO05D009084 1.1e-27 127.9 133 56.4
Sed0024586 Sechium edule HOM05D007292 ORTHO05D009084 1.9e-27 127.1 137 53.3
Gohir.D04G069400 Gossypium hirsutum HOM05D007292 ORTHO05D009084 2.4e-27 126.7 139 56.1
Gorai.012G078000 Gossypium raimondii HOM05D007292 ORTHO05D009084 2.4e-27 126.7 139 56.1
Sc10g0002470 Simmondsia chinensis HOM05D007292 ORTHO05D009084 2.4e-27 126.7 140 55.0
CsaV3_5G010290 Cucumis sativus L. HOM05D007292 ORTHO05D009084 3.2e-27 126.3 135 54.8
ECA238G0254 Erigeron canadensis HOM05D007292 ORTHO05D009084 3.2e-27 126.3 136 54.4
Lsat_1_v5_gn_2_124081 Lactuca sativa HOM05D007292 ORTHO05D009084 5.4e-27 125.6 137 53.3
CANSAT56G1912 Cannabis sativa HOM05D007292 ORTHO05D009084 3.5e-26 122.9 138 52.9
Cpa.g.sc19.157 Carica papaya HOM05D007292 ORTHO05D009084 3.5e-26 122.9 139 54.0
EL10Ac2g04856 Beta vulgaris HOM05D007292 ORTHO05D009084 4.6e-26 122.5 136 54.4
AUR62022909 Chenopodium quinoa HOM05D007292 ORTHO05D009084 7.8e-26 121.7 140 53.6
ClCG07G004350 Citrullus lanatus HOM05D007292 ORTHO05D009084 1.0e-25 121.3 125 57.6
Lj6g0005846 Lotus japonicus HOM05D007292 ORTHO05D009084 1.7e-25 120.6 130 54.6
Prupe.2G252500 Prunus persica HOM05D007292 ORTHO05D009084 2.3e-25 120.2 137 54.7
Medtr3g070960 Medicago truncatula HOM05D007292 ORTHO05D009084 3.9e-25 119.4 140 50.0
Ah.16g103670 Amaranthus hybridus HOM05D007292 ORTHO05D009084 8.6e-25 118.2 186 40.9
MD01G1154900 Malus domestica HOM05D007292 ORTHO05D009084 8.6e-25 118.2 137 54.7
Atru.chr12.94 Acer truncatum HOM05D007292 ORTHO05D009084 1.5e-24 117.5 139 52.5
Glyma.11G231200 Glycine max HOM05D007292 ORTHO05D009084 1.9e-24 117.1 139 51.8
RcHm_v2.0_Chr1g0370551 Rosa chinensis HOM05D007292 ORTHO05D009084 4.3e-24 115.9 133 51.9
MD07G1224000 Malus domestica HOM05D007292 ORTHO05D009084 5.6e-24 115.5 132 53.0
DCAR_011829 Daucus carota HOM05D007292 ORTHO05D009084 9.5e-24 114.8 138 51.4
Psat5g129440 Pisum sativum HOM05D007292 ORTHO05D009084 1.2e-23 114.4 138 52.2
FAN10G1098 Fragaria x ananassa HOM05D007292 ORTHO05D009084 1.6e-23 114.0 133 50.4
FvH4_7g24710 Fragaria vesca HOM05D007292 ORTHO05D009084 2.1e-23 113.6 133 50.4
FAN01G0766 Fragaria x ananassa HOM05D007292 ORTHO05D009084 2.1e-23 113.6 133 50.4
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 2.1e-23 113.6 133 50.4
FAN06G1000 Fragaria x ananassa HOM05D007292 ORTHO05D009084 2.1e-23 113.6 133 50.4
Glyma.18G025900 Glycine max HOM05D007292 ORTHO05D009084 2.1e-23 113.6 139 51.8
PSO384G0417 Papaver somniferum HOM05D007292 ORTHO05D009084 4.7e-23 112.5 134 50.7
TPR.G11203 Trifolium pratense HOM05D007292 ORTHO05D009084 1.1e-22 111.3 137 49.6
Hma1.2p1_0145F.1_g065370 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 1.8e-22 110.5 127 52.8
Hma1.2p1_2705F.1_g327175 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 1.8e-22 110.5 127 52.8
TAR636G1797 Trochodendron aralioides HOM05D007292 ORTHO05D009084 2.0e-21 107.1 139 52.5
Phvul.001G244400 Phaseolus vulgaris HOM05D007292 ORTHO05D009084 7.6e-21 105.1 139 47.5
VMungo1383G3483 Vigna mungo HOM05D001399 ORTHO05D001670 1.3e-20 104.4 139 48.9
Ca_15135_v3 Cicer arietinum L. HOM05D007292 ORTHO05D009084 4.1e-19 99.4 137 45.3
BcaB02g08388 Brassica carinata HOM05D007292 ORTHO05D009084 7.8e-18 95.1 85 57.6
Sabra10G0144000 Salix brachista HOM05D007292 ORTHO05D009084 3.0e-17 93.2 95 56.8
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 3.9e-17 92.8 104 58.7
SGA_v2.0_scaffold378G50330 Striga asiatica HOM05D007292 ORTHO05D009084 1.5e-16 90.9 136 45.6
Nn2g13181 Nelumbo nucifera HOM05D007292 ORTHO05D009084 9.6e-16 88.2 112 51.8
Hma1.2p1_2705F.1_g327170 Hydrangea macrophylla HOM05D001399 ORTHO05D001670 1.6e-15 87.4 123 48.8
SEGI_20884 Sequoiadendron giganteum HOM05D007292 ORTHO05D009084 2.4e-14 83.6 131 42.0
CDE04G1468 Ceratophyllum demersum HOM05D000652 ORTHO05D009084 1.6e-10 70.9 96 43.8
Mapoly0147s0009 Marchantia polymorpha HOM05D007292 ORTHO05D009084 6.9e-06 55.5 87 37.9


User provided reference genes

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