Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0278900 Oryza sativa ssp. japonica HOM05D007100 ORTHO05D008958 1.9e-60 236.5 212 100.0
Zm00001eb397520 Zea mays HOM05D007100 ORTHO05D008958 4.8e-40 168.7 219 82.6
HPP92_017087 Vanilla planifolia HOM05D007100 ORTHO05D008958 1.6e-30 137.1 175 76.0
Cc08_g00530 Coffea canephora HOM05D007100 ORTHO05D008958 1.0e-29 134.4 170 67.1
Lj1g0026662 Lotus japonicus HOM05D007100 ORTHO05D008958 1.7e-29 133.7 169 72.8
Migut.A00035 Erythranthe guttata HOM05D007100 ORTHO05D008958 2.2e-29 133.3 169 60.9
Hma1.2p1_0243F.1_g100880 Hydrangea macrophylla HOM05D007100 ORTHO05D008958 6.5e-29 131.7 166 71.1
PGR044G2669 Punica granatum HOM05D007100 ORTHO05D008958 6.5e-29 131.7 162 65.4
QL02p021503 Quercus lobata HOM05D007100 ORTHO05D008958 6.5e-29 131.7 167 74.9
TAR625G1529 Trochodendron aralioides HOM05D007100 ORTHO05D008958 1.1e-28 131.0 166 65.7
unitig_32.g11115 Utricularia gibba HOM05D007100 ORTHO05D008958 1.1e-28 131.0 169 62.1
CANSAT25G0532 Cannabis sativa HOM05D007100 ORTHO05D008958 1.5e-28 130.6 156 62.2
CiPaw.03G162500 Carya illinoinensis HOM05D007100 ORTHO05D008958 1.5e-28 130.6 169 73.4
ClCG08G013430 Citrullus lanatus HOM05D007100 ORTHO05D008958 1.5e-28 130.6 166 62.7
Potri.018G026500 Populus trichocarpa HOM05D007100 ORTHO05D008958 1.5e-28 130.6 166 66.3
FAN20G2791 Fragaria x ananassa HOM05D007100 ORTHO05D008958 1.9e-28 130.2 169 64.5
MBI18_g07570_MAGBIO Magnolia biondii HOM05D007100 ORTHO05D008958 2.5e-28 129.8 104 70.2
Eucgr.C02765 Eucalyptus grandis HOM05D007100 ORTHO05D008958 4.2e-28 129.0 106 68.9
FvH4_2g28951 Fragaria vesca HOM05D007100 ORTHO05D008958 4.2e-28 129.0 169 63.9
Cpa.g.sc217.8 Carica papaya HOM05D007100 ORTHO05D008958 5.5e-28 128.6 159 63.5
MD15G1126100 Malus domestica HOM05D007100 ORTHO05D008958 5.5e-28 128.6 163 63.2
Manes.16G122700 Manihot esculenta HOM05D007100 ORTHO05D008958 5.5e-28 128.6 167 65.3
PSO210G2345 Papaver somniferum HOM05D007100 ORTHO05D008958 5.5e-28 128.6 173 61.3
CSS0028708 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 7.2e-28 128.3 166 71.7
CSS0035808 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 7.2e-28 128.3 166 71.7
Glyma.04G066000 Glycine max HOM05D007100 ORTHO05D008958 7.2e-28 128.3 152 68.4
Nitab4.5_0000109g0380 Nicotiana tabacum HOM05D007100 ORTHO05D008958 7.2e-28 128.3 158 67.7
Potri.006G255600 Populus trichocarpa HOM05D007100 ORTHO05D008958 7.2e-28 128.3 166 63.9
MELO3C011269.2 Cucumis melo HOM05D007100 ORTHO05D008958 9.4e-28 127.9 166 60.2
Lalb_Chr08g0244131 Lupinus albus HOM05D007100 ORTHO05D008958 9.4e-28 127.9 180 63.9
RcHm_v2.0_Chr6g0297791 Rosa chinensis HOM05D007100 ORTHO05D008958 9.4e-28 127.9 169 62.1
Sc09g0008150 Simmondsia chinensis HOM05D007100 ORTHO05D008958 9.4e-28 127.9 159 76.7
CsaV3_2G032160 Cucumis sativus L. HOM05D007100 ORTHO05D008958 1.2e-27 127.5 166 57.2
Glyma.06G067400 Glycine max HOM05D007100 ORTHO05D008958 1.2e-27 127.5 152 73.7
Manes.03G013900 Manihot esculenta HOM05D007100 ORTHO05D008958 1.2e-27 127.5 218 55.5
Oeu057296.2 Olea europaea HOM05D007100 ORTHO05D008958 1.2e-27 127.5 169 65.7
Duzib168G1945 Durio zibethinus HOM05D007100 ORTHO05D008958 2.1e-27 126.7 149 66.4
HanXRQChr13g0403031 Helianthus annuus HOM05D007100 ORTHO05D008958 2.1e-27 126.7 163 71.2
Aqoxy7G03649 Aquilegia oxysepala HOM05D007100 ORTHO05D008958 2.7e-27 126.3 169 64.5
Lj7A724T61 Lonicera japonica HOM05D007100 ORTHO05D008958 2.7e-27 126.3 171 73.1
Prupe.1G482000 Prunus persica HOM05D007100 ORTHO05D008958 2.7e-27 126.3 163 62.0
Sopen06g024470 Solanum pennellii HOM05D007100 ORTHO05D008958 2.7e-27 126.3 168 66.1
PGSC0003DMG400020466 Solanum tuberosum HOM05D007100 ORTHO05D008958 3.6e-27 125.9 167 63.5
Cfa013136 Carpinus fangiana HOM05D007100 ORTHO05D008958 4.7e-27 125.6 166 75.9
VMungo1309G2169 Vigna mungo HOM05D007100 ORTHO05D008958 4.7e-27 125.6 152 63.2
Ah.16g104500 Amaranthus hybridus HOM05D007100 ORTHO05D008958 6.1e-27 125.2 151 62.9
CAN.G1230.3 Capsicum annuum HOM05D007100 ORTHO05D008958 6.1e-27 125.2 158 66.5
CDE02G1895 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 8.0e-27 124.8 95 69.5
CDE08G0375 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 8.0e-27 124.8 172 64.5
ECA233G2559 Erigeron canadensis HOM05D007100 ORTHO05D008958 8.0e-27 124.8 161 72.7
PSO210G6161 Papaver somniferum HOM05D007100 ORTHO05D008958 8.0e-27 124.8 165 62.4
Solyc06g066000.3 Solanum lycopersicum HOM05D007100 ORTHO05D008958 8.0e-27 124.8 166 65.1
Sopen06g024480 Solanum pennellii HOM05D007100 ORTHO05D008958 8.0e-27 124.8 166 65.1
PGSC0003DMG400020484 Solanum tuberosum HOM05D007100 ORTHO05D008958 8.0e-27 124.8 166 65.1
Sabra18G0029100 Salix brachista HOM05D007100 ORTHO05D008958 1.0e-26 124.4 164 55.5
Thecc.09G023500 Theobroma cacao HOM05D007100 ORTHO05D008958 1.0e-26 124.4 166 59.0
AUR62012407 Chenopodium quinoa HOM05D007100 ORTHO05D008958 1.4e-26 124.0 151 62.9
AUR62031529 Chenopodium quinoa HOM05D007100 ORTHO05D008958 1.4e-26 124.0 166 62.7
Sed0021254 Sechium edule HOM05D007100 ORTHO05D008958 1.4e-26 124.0 209 55.0
SGA_v2.0_scaffold20G09112 Striga asiatica HOM05D007100 ORTHO05D008958 1.8e-26 123.6 167 62.3
Ah.10g035800 Amaranthus hybridus HOM05D007100 ORTHO05D008958 3.0e-26 122.9 169 59.2
TPR.G3111 Trifolium pratense HOM05D007100 ORTHO05D008958 3.0e-26 122.9 165 59.4
Ca_15742_v3 Cicer arietinum L. HOM05D007100 ORTHO05D008958 4.0e-26 122.5 164 64.6
Solyc06g065990.1 Solanum lycopersicum HOM05D007100 ORTHO05D008958 4.0e-26 122.5 168 67.9
TWI32G1182 Tripterygium wilfordii HOM05D007100 ORTHO05D008958 6.8e-26 121.7 166 66.9
Nn2g12100 Nelumbo nucifera HOM05D007100 ORTHO05D008958 1.2e-25 120.9 164 68.3
Nitab4.5_0003634g0020 Nicotiana tabacum HOM05D007100 ORTHO05D008958 1.2e-25 120.9 93 69.9
Phvul.009G092366 Phaseolus vulgaris HOM05D007100 ORTHO05D008958 1.2e-25 120.9 152 69.7
Lsat_1_v5_gn_6_21280 Lactuca sativa HOM05D007100 ORTHO05D008958 1.5e-25 120.6 161 60.9
AT4G32260 Arabidopsis thaliana HOM05D007100 ORTHO05D008958 2.6e-25 119.8 167 62.3
ATR0800G074 Amborella trichopoda HOM05D007100 ORTHO05D008958 3.4e-25 119.4 143 51.0
BcaC09g52005 Brassica carinata HOM05D007100 ORTHO05D008958 4.4e-25 119.0 163 58.9
BolC1t00671H Brassica oleracea HOM05D007100 ORTHO05D008958 4.4e-25 119.0 163 58.9
CARHR240140 Cardamine hirsuta HOM05D007100 ORTHO05D008958 4.4e-25 119.0 167 59.3
Thhalv10026214m.g Eutrema salsugineum HOM05D007100 ORTHO05D008958 5.7e-25 118.6 163 68.1
AL7G19610 Arabidopsis lyrata HOM05D007100 ORTHO05D008958 7.5e-25 118.2 167 60.5
Carub.0007s0834 Capsella rubella HOM05D007100 ORTHO05D008958 7.5e-25 118.2 167 60.5
BraA01t00579Z Brassica rapa HOM05D007100 ORTHO05D008958 9.8e-25 117.9 163 55.2
Rhsim02G0202100 Rhododendron simsii HOM05D007100 ORTHO05D008958 9.8e-25 117.9 154 72.1
Sp7g29990 Schrenkiella parvula HOM05D007100 ORTHO05D008958 9.8e-25 117.9 163 66.3
Atru.chr7.2441 Acer truncatum HOM05D007100 ORTHO05D008958 1.3e-24 117.5 166 63.3
C01p06770 Brassica napus HOM05D002526 ORTHO05D004039 2.4e-23 113.2 97 62.9
Aa31LG2G17720 Aethionema arabicum HOM05D007100 ORTHO05D008958 5.4e-23 112.1 167 59.9
A01p06140 Brassica napus HOM05D002526 ORTHO05D004039 5.4e-23 112.1 97 62.9
BcaNung03145 Brassica carinata HOM05D002526 ORTHO05D004039 1.2e-22 110.9 97 61.9
Medtr3g106820 Medicago truncatula HOM05D007100 ORTHO05D008958 1.6e-22 110.5 162 61.1
COL.COLO4_18868 Corchorus olitorius HOM05D007100 ORTHO05D008958 5.0e-21 105.5 166 56.0
SEGI_36293 Sequoiadendron giganteum HOM05D007100 ORTHO05D008958 4.2e-20 102.4 84 66.7
AagrBONN_evm.TU.Sc2ySwM_117.789 Anthoceros agrestis HOM05D007100 ORTHO05D008958 1.4e-18 97.4 161 56.5
EL10Ac2g04205 Beta vulgaris HOM05D007100 ORTHO05D008958 4.0e-18 95.9 115 50.4
Duzib150G1121 Durio zibethinus HOM05D007100 ORTHO05D008958 6.8e-18 95.1 101 54.5
Pp3c16_15270 Physcomitrium patens HOM05D007100 ORTHO05D008958 8.8e-18 94.7 87 58.6
Pp3c5_7810 Physcomitrium patens HOM05D007100 ORTHO05D008958 8.8e-18 94.7 87 58.6
HPP92_017015 Vanilla planifolia HOM05D007100 ORTHO05D008958 8.8e-18 94.7 61 80.3
Pp3c6_23221 Physcomitrium patens HOM05D007100 ORTHO05D008958 1.2e-17 94.4 98 56.1
SMO347G0047 Selaginella moellendorffii HOM05D007100 ORTHO05D008958 2.0e-17 93.6 79 59.5
Mapoly0061s0013 Marchantia polymorpha HOM05D007100 ORTHO05D008958 3.4e-17 92.8 150 68.0
Nitab4.5_0011986g0010 Nicotiana tabacum HOM05D007100 ORTHO05D008958 8.3e-16 88.2 124 68.5
Cre11.g481450 Chlamydomonas reinhardtii HOM05D007100 ORTHO05D008958 1.4e-15 87.4 108 49.1
CiPaw.05G145000 Carya illinoinensis HOM05D007100 ORTHO05D008958 1.8e-15 87.0 60 76.7
Dinv08635 Davidia involucrata HOM05D007100 ORTHO05D008958 2.4e-15 86.7 60 73.3
Ciclev10009435m.g Citrus clementina HOM05D007100 ORTHO05D008958 4.1e-15 85.9 166 37.3
CBR_g39245 Chara braunii HOM05D007100 ORTHO05D008958 7.0e-15 85.1 97 52.6
PRCOL_00004936 Prasinoderma coloniale HOM05D007100 ORTHO05D008958 2.9e-13 79.7 83 45.8
RcHm_v2.0_Chr4g0429151 Rosa chinensis HOM05D007100 ORTHO05D008958 6.1e-11 72.0 55 61.8
MCO01G691 Micromonas commoda HOM05D007100 ORTHO05D008958 8.0e-11 71.6 97 49.5
Gohir.A07G028825 Gossypium hirsutum HOM05D007100 ORTHO05D008958 1.1e-07 61.2 105 61.0
Gohir.D07G032851 Gossypium hirsutum HOM05D007100 ORTHO05D008958 1.1e-07 61.2 105 52.4
Nitab4.5_0002042g0090 Nicotiana tabacum HOM05D007100 ORTHO05D008958 1.1e-07 61.2 105 67.6
Sabra06G0199900 Salix brachista HOM05D007100 ORTHO05D008958 1.4e-07 60.8 105 58.1


User provided reference genes

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