Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 1.5e-92 342.8 174 100.0
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 1.0e-51 207.2 142 67.6
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 1.4e-48 196.8 159 58.5
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 7.7e-44 181.0 147 57.1
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 2.7e-36 156.0 167 46.1
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 1.0e-35 154.1 161 46.0
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 1.0e-35 154.1 166 44.6
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 1.7e-35 153.3 130 51.5
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 2.9e-35 152.5 130 51.5
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 2.9e-35 152.5 127 52.8
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 3.8e-35 152.1 163 46.6
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 3.8e-35 152.1 127 51.2
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 1.1e-34 150.6 166 42.8
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 1.5e-34 150.2 128 50.0
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 1.5e-34 150.2 128 50.0
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.9e-34 149.8 128 49.2
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 2.5e-34 149.4 128 50.8
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 2.5e-34 149.4 128 50.8
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 3.2e-34 149.1 127 50.4
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 3.2e-34 149.1 127 51.2
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 5.5e-34 148.3 127 51.2
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 7.2e-34 147.9 167 44.3
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 7.2e-34 147.9 125 52.0
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 9.4e-34 147.5 126 53.2
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 9.4e-34 147.5 129 49.6
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 1.2e-33 147.1 127 51.2
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 1.2e-33 147.1 127 52.0
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 2.1e-33 146.4 163 44.8
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 2.1e-33 146.4 127 49.6
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 2.7e-33 146.0 127 49.6
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 3.6e-33 145.6 171 40.9
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 3.6e-33 145.6 127 48.8
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 4.7e-33 145.2 162 43.2
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 4.7e-33 145.2 152 43.4
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 4.7e-33 145.2 127 48.8
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 4.7e-33 145.2 146 44.5
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 6.1e-33 144.8 127 50.4
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 6.1e-33 144.8 127 48.0
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 8.0e-33 144.4 127 49.6
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 8.0e-33 144.4 145 46.9
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 1.0e-32 144.1 127 48.8
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 1.0e-32 144.1 128 46.1
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 1.0e-32 144.1 127 48.8
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 1.4e-32 143.7 128 48.4
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 1.4e-32 143.7 125 49.6
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 1.4e-32 143.7 162 41.4
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 1.8e-32 143.3 164 42.7
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 2.3e-32 142.9 127 48.0
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 3.0e-32 142.5 149 43.0
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 3.0e-32 142.5 128 46.9
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 4.0e-32 142.1 128 47.7
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 4.0e-32 142.1 128 47.7
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 5.2e-32 141.7 128 47.7
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 6.8e-32 141.4 127 47.2
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 1.2e-31 140.6 166 42.2
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 1.2e-31 140.6 127 48.0
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 1.5e-31 140.2 166 41.6
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 1.5e-31 140.2 127 48.0
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 1.5e-31 140.2 128 44.5
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 1.5e-31 140.2 174 42.0
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 2.0e-31 139.8 180 40.0
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 2.0e-31 139.8 128 46.1
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 2.0e-31 139.8 127 48.0
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 2.0e-31 139.8 127 47.2
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 2.0e-31 139.8 127 48.8
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 2.6e-31 139.4 128 46.1
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 2.6e-31 139.4 165 40.6
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 2.6e-31 139.4 170 42.9
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 2.6e-31 139.4 126 47.6
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 2.6e-31 139.4 127 46.5
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 2.6e-31 139.4 127 48.0
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 3.4e-31 139.0 128 46.1
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 3.4e-31 139.0 127 47.2
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 4.4e-31 138.7 128 45.3
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 4.4e-31 138.7 128 45.3
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 4.4e-31 138.7 125 49.6
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 4.4e-31 138.7 126 47.6
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 4.4e-31 138.7 127 48.0
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 4.4e-31 138.7 168 43.5
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 5.7e-31 138.3 127 48.8
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 7.5e-31 137.9 127 47.2
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 9.8e-31 137.5 169 43.2
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 9.8e-31 137.5 126 46.0
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 1.3e-30 137.1 166 44.0
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 1.7e-30 136.7 125 48.8
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 2.8e-30 136.0 163 41.7
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 2.8e-30 136.0 166 42.8
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 2.8e-30 136.0 127 47.2
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 4.8e-30 135.2 163 38.7
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 4.8e-30 135.2 167 40.7
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 6.3e-30 134.8 128 45.3
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 6.3e-30 134.8 166 38.6
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 1.8e-29 133.3 162 40.1
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 4.1e-29 132.1 160 40.6
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 7.0e-29 131.3 128 46.9
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 9.1e-29 131.0 160 43.1
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 9.1e-29 131.0 137 40.1
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 2.3e-27 126.3 170 38.2
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 3.8e-27 125.6 168 39.3
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 4.2e-26 122.1 151 41.1
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 4.7e-25 118.6 118 44.9
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 1.2e-23 114.0 116 41.4
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 2.0e-23 113.2 171 35.7
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 2.0e-23 113.2 189 32.3
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 4.4e-23 112.1 143 38.5
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 9.8e-23 110.9 127 43.3
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 4.5e-20 102.1 94 45.7
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 7.5e-15 84.7 79 45.6
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 6.4e-14 81.6 83 41.0
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 2.4e-13 79.7 71 43.7
CDE07G1406 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 4.6e-12 75.5 58 58.6
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 3.9e-11 72.4 73 38.4
Cre11.g478456 Chlamydomonas reinhardtii HOM05D005923 ORTHO05D007376 1.6e-09 67.0 121 33.1


User provided reference genes

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