Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0259700 Oryza sativa ssp. japonica HOM05D005975 ORTHO05D007373 0.0e+00 1265.8 637 100.0
Zm00001eb011310 Zea mays HOM05D005975 ORTHO05D007373 3.0e-295 1018.1 578 89.4
FvH4_5g12680 Fragaria vesca HOM05D005975 ORTHO05D007373 3.7e-229 798.5 671 61.5
FAN18G3396 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.9e-228 796.2 671 61.4
TAR374G1293 Trochodendron aralioides HOM05D005975 ORTHO05D007373 3.2e-228 795.4 686 61.1
RcHm_v2.0_Chr7g0184651 Rosa chinensis HOM05D005975 ORTHO05D007373 4.1e-228 795.0 675 61.0
Thecc.03G028700 Theobroma cacao HOM05D005975 ORTHO05D007373 4.1e-228 795.0 686 60.8
Ciclev10019197m.g Citrus clementina HOM05D005975 ORTHO05D007373 7.0e-228 794.3 669 61.9
Duzib205G1016 Durio zibethinus HOM05D005975 ORTHO05D007373 6.0e-227 791.2 675 61.8
Gohir.A11G007000 Gossypium hirsutum HOM05D005975 ORTHO05D007373 1.0e-226 790.4 688 60.8
MD14G1222100 Malus domestica HOM05D005975 ORTHO05D007373 1.7e-226 789.6 685 60.9
Rhsim08G0136800 Rhododendron simsii HOM05D005975 ORTHO05D007373 2.3e-226 789.3 665 61.5
Gorai.007G007400 Gossypium raimondii HOM05D005975 ORTHO05D007373 5.0e-226 788.1 688 60.6
Lj1g0009400 Lotus japonicus HOM05D005975 ORTHO05D007373 8.6e-226 787.3 668 62.0
FAN04G2679 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.1e-225 786.9 687 59.7
Eucgr.B00701 Eucalyptus grandis HOM05D005975 ORTHO05D007373 2.5e-225 785.8 659 62.1
Manes.05G139300 Manihot esculenta HOM05D005975 ORTHO05D007373 2.5e-225 785.8 675 61.3
Ca_23135_v3 Cicer arietinum L. HOM05D005975 ORTHO05D007373 4.3e-225 785.0 660 61.2
FAN08G0232 Fragaria x ananassa HOM05D005975 ORTHO05D007373 9.5e-225 783.9 671 60.7
GSVIVG01008239001 Vitis vinifera HOM05D005975 ORTHO05D007373 9.5e-225 783.9 642 63.4
MD06G1211600 Malus domestica HOM05D005975 ORTHO05D007373 1.2e-224 783.5 672 60.9
Phvul.009G200500 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 1.2e-224 783.5 660 62.0
Gohir.D11G006100 Gossypium hirsutum HOM05D005975 ORTHO05D007373 2.8e-224 782.3 688 60.2
TAR622G0473 Trochodendron aralioides HOM05D005975 ORTHO05D007373 2.8e-224 782.3 667 61.5
Glyma.04G152200 Glycine max HOM05D005975 ORTHO05D007373 5.2e-223 778.1 647 61.7
Lalb_Chr12g0197601 Lupinus albus HOM05D005975 ORTHO05D007373 1.2e-222 776.9 670 60.7
MBI19_g38388_MAGBIO Magnolia biondii HOM05D005975 ORTHO05D007373 2.0e-222 776.2 660 61.2
FAN13G1844 Fragaria x ananassa HOM05D005975 ORTHO05D007373 2.6e-222 775.8 680 59.6
ClCG06G015000 Citrullus lanatus HOM05D005975 ORTHO05D007373 3.4e-222 775.4 669 60.7
Thhalv10018286m.g Eutrema salsugineum HOM05D005975 ORTHO05D007373 5.8e-222 774.6 635 62.5
CsaV3_1G003650 Cucumis sativus L. HOM05D005975 ORTHO05D007373 7.5e-222 774.2 668 61.2
CARHR067040 Cardamine hirsuta HOM05D005975 ORTHO05D007373 9.8e-222 773.9 634 62.5
AT1G73930 Arabidopsis thaliana HOM05D005975 ORTHO05D007373 2.2e-221 772.7 634 62.0
MELO3C017289.2 Cucumis melo HOM05D005975 ORTHO05D007373 2.2e-221 772.7 669 61.0
AL2G33760 Arabidopsis lyrata HOM05D005975 ORTHO05D007373 2.9e-221 772.3 636 62.3
HanXRQChr09g0269781 Helianthus annuus HOM05D005975 ORTHO05D007373 2.9e-221 772.3 645 62.2
Glyma.06G210800 Glycine max HOM05D005975 ORTHO05D007373 3.7e-221 771.9 647 61.5
PGR083G1175 Punica granatum HOM05D005975 ORTHO05D007373 3.7e-221 771.9 670 59.6
PSO063G1047 Papaver somniferum HOM05D005975 ORTHO05D007373 4.9e-221 771.5 670 61.0
Hma1.2p1_0592F.1_g185285 Hydrangea macrophylla HOM05D005975 ORTHO05D007373 1.1e-220 770.4 666 60.5
Potri.015G049900 Populus trichocarpa HOM05D005975 ORTHO05D007373 1.1e-220 770.4 685 59.6
CiPaw.15G127100 Carya illinoinensis HOM05D005975 ORTHO05D007373 1.9e-220 769.6 702 58.7
ECA232G0421 Erigeron canadensis HOM05D005975 ORTHO05D007373 5.4e-220 768.1 642 62.3
Psat1g024880 Pisum sativum HOM05D005975 ORTHO05D007373 5.4e-220 768.1 660 61.1
Potri.012G060200 Populus trichocarpa HOM05D005975 ORTHO05D007373 5.4e-220 768.1 666 61.0
Sabra12G0043300 Salix brachista HOM05D005975 ORTHO05D007373 7.0e-220 767.7 665 60.8
Peaxi162Scf00015g00726 Petunia axillaris HOM05D005975 ORTHO05D007373 1.6e-219 766.5 668 60.3
PSO782G2585 Papaver somniferum HOM05D005975 ORTHO05D007373 3.5e-219 765.4 665 60.9
Actinidia31028 Actinidia chinensis HOM05D005975 ORTHO05D007373 1.0e-218 763.8 656 61.3
Oeu024324.1 Olea europaea HOM05D005975 ORTHO05D007373 1.7e-218 763.1 639 61.3
Glyma.17G121100 Glycine max HOM05D005975 ORTHO05D007373 2.3e-218 762.7 653 60.9
Nitab4.5_0001599g0180 Nicotiana tabacum HOM05D005975 ORTHO05D007373 3.0e-218 762.3 658 60.5
Aqoxy3G03906 Aquilegia oxysepala HOM05D005975 ORTHO05D007373 1.5e-217 760.0 670 59.0
TPR.G10356 Trifolium pratense HOM05D005975 ORTHO05D007373 1.9e-217 759.6 643 61.6
Sed0024013 Sechium edule HOM05D005975 ORTHO05D007373 7.3e-217 757.7 668 59.9
DCAR_015134 Daucus carota HOM05D005975 ORTHO05D007373 1.6e-216 756.5 645 60.6
Cc04_g07500 Coffea canephora HOM05D005975 ORTHO05D007373 2.8e-216 755.7 644 61.0
BolC2t09180H Brassica oleracea HOM05D005975 ORTHO05D007373 1.8e-215 753.1 636 61.5
BcaB05g24819 Brassica carinata HOM05D005975 ORTHO05D007373 2.3e-215 752.7 635 61.9
CSS0000913 Camellia sinensis var. sinensis HOM05D005975 ORTHO05D007373 1.2e-214 750.4 684 57.7
AUR62036958 Chenopodium quinoa HOM05D005975 ORTHO05D007373 1.2e-214 750.4 662 60.1
BraA02t06937Z Brassica rapa HOM05D005975 ORTHO05D007373 1.5e-214 750.0 636 61.2
THA.LOC104808292 Tarenaya hassleriana HOM05D005975 ORTHO05D007373 1.5e-214 750.0 632 60.6
AUR62032193 Chenopodium quinoa HOM05D005975 ORTHO05D007373 3.4e-214 748.8 669 59.2
BcaC03g15468 Brassica carinata HOM05D005975 ORTHO05D007373 5.8e-214 748.0 636 61.2
A02p18950 Brassica napus HOM05D005975 ORTHO05D007373 5.8e-214 748.0 633 61.3
Solyc03g119750.4 Solanum lycopersicum HOM05D005975 ORTHO05D007373 9.9e-214 747.3 654 59.8
Nitab4.5_0000410g0070 Nicotiana tabacum HOM05D005975 ORTHO05D007373 1.3e-213 746.9 667 59.2
C02p31490 Brassica napus HOM05D005975 ORTHO05D007373 2.2e-213 746.1 637 60.8
PGSC0003DMG400005625 Solanum tuberosum HOM05D005975 ORTHO05D007373 2.9e-213 745.7 645 60.2
Hund02524 Selenicereus undatus HOM05D005975 ORTHO05D007373 3.7e-213 745.3 664 58.9
Ah.11g047090 Amaranthus hybridus HOM05D005975 ORTHO05D007373 8.3e-213 744.2 644 60.9
SGA_v2.0_scaffold25G10981 Striga asiatica HOM05D005975 ORTHO05D007373 3.2e-212 742.3 644 59.2
VMungo1215G0359 Vigna mungo HOM05D005975 ORTHO05D007373 4.1e-212 741.9 659 58.4
VMungo1309G0041 Vigna mungo HOM05D005975 ORTHO05D007373 7.1e-212 741.1 594 64.0
Sp5g29130 Schrenkiella parvula HOM05D005975 ORTHO05D007373 9.2e-212 740.7 625 61.0
Sopen03g038600 Solanum pennellii HOM05D005975 ORTHO05D007373 1.2e-211 740.3 654 59.5
Sc10g0009550 Simmondsia chinensis HOM05D005975 ORTHO05D007373 2.7e-211 739.2 666 58.9
Hund10002 Selenicereus undatus HOM05D005975 ORTHO05D007373 1.3e-210 736.9 664 58.3
Atru.chr9.776 Acer truncatum HOM05D005975 ORTHO05D007373 6.6e-210 734.6 620 61.5
Migut.I00389 Erythranthe guttata HOM05D005975 ORTHO05D007373 1.1e-209 733.8 688 56.4
Cpa.g.sc549.1 Carica papaya HOM05D005975 ORTHO05D007373 9.5e-209 730.7 615 62.0
Dinv38586 Davidia involucrata HOM05D005975 ORTHO05D007373 1.2e-208 730.3 614 62.7
Prupe.5G217600 Prunus persica HOM05D005975 ORTHO05D007373 2.1e-208 729.6 543 68.1
Lsat_1_v5_gn_3_10441 Lactuca sativa HOM05D005975 ORTHO05D007373 4.7e-208 728.4 635 59.8
QL10p022556 Quercus lobata HOM05D005975 ORTHO05D007373 1.2e-206 723.8 617 61.4
vmacro17674 Vaccinium macrocarpon HOM05D005975 ORTHO05D007373 2.6e-206 722.6 608 60.5
Lj9A429T54 Lonicera japonica HOM05D005975 ORTHO05D007373 4.4e-206 721.8 614 61.9
arahy.Tifrunner.gnm1.ann1.1K5T8S Arachis hypogaea HOM05D005975 ORTHO05D007373 8.4e-205 717.6 615 61.8
Haze_18619 Corylus avellana HOM05D005975 ORTHO05D007373 3.2e-204 715.7 611 60.6
Aa31LG4G4220 Aethionema arabicum HOM05D005975 ORTHO05D007373 2.1e-203 713.0 637 59.5
ATR0753G136 Amborella trichopoda HOM05D005975 ORTHO05D007373 7.8e-203 711.1 747 53.0
CAN.G438.116 Capsicum annuum HOM05D005975 ORTHO05D007373 8.1e-200 701.0 615 59.2
EL10Ac5g11254 Beta vulgaris HOM05D005975 ORTHO05D007373 6.9e-199 698.0 617 59.3
MSTRG.22940 Avicennia marina HOM05D005975 ORTHO05D007373 7.6e-198 694.5 614 59.0
unitig_22.g6248 Utricularia gibba HOM05D005975 ORTHO05D007373 7.6e-190 667.9 660 54.2
Phvul.003G176900 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 2.2e-189 666.4 520 64.2
Pp3c4_11450 Physcomitrium patens HOM05D005975 ORTHO05D007373 2.5e-185 652.9 764 49.0
SEGI_09157 Sequoiadendron giganteum HOM05D005975 ORTHO05D007373 1.5e-182 643.7 727 49.8
Pp3c12_18170 Physcomitrium patens HOM05D005975 ORTHO05D007373 3.4e-182 642.5 770 48.6
Mapoly0016s0160 Marchantia polymorpha HOM05D005975 ORTHO05D007373 4.9e-181 638.6 565 59.1
AagrBONN_evm.TU.Sc2ySwM_228.4839 Anthoceros agrestis HOM05D005975 ORTHO05D007373 1.3e-176 624.0 810 46.0
SalBow5G4970 Salvia bowleyana HOM05D005975 ORTHO05D007373 8.2e-176 621.3 658 51.8
Glyma.05G013100 Glycine max HOM05D005975 ORTHO05D007373 2.1e-171 606.7 657 52.2
COL.COLO4_22722 Corchorus olitorius HOM05D005975 ORTHO05D007373 2.3e-170 603.2 463 65.7
SMO367G0788 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 8.7e-170 601.3 626 51.6
Carub.0002s2070 Capsella rubella HOM05D005975 ORTHO05D007373 1.4e-167 594.0 459 65.1
Sabra15G0077800 Salix brachista HOM05D005975 ORTHO05D007373 1.5e-166 590.5 651 51.6
CBR_g30105 Chara braunii HOM05D005975 ORTHO05D007373 1.2e-150 537.7 544 53.3
CDE05G1454 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 1.4e-138 497.7 533 52.3
TAR622G1340 Trochodendron aralioides HOM05D005975 ORTHO05D007373 1.3e-128 464.5 432 56.2
Zm00001eb237870 Zea mays HOM05D005975 ORTHO05D007373 1.5e-124 451.1 521 53.7
HPP92_016579 Vanilla planifolia HOM05D005975 ORTHO05D007373 7.2e-124 448.7 304 72.4
Nn3g17719 Nelumbo nucifera HOM05D005975 ORTHO05D007373 9.8e-121 438.3 435 55.2
arahy.Tifrunner.gnm1.ann1.CEL6SJ Arachis hypogaea HOM05D005975 ORTHO05D007373 1.3e-101 374.8 265 70.9
HPP92_016580 Vanilla planifolia HOM05D005975 ORTHO05D007373 5.8e-97 359.4 247 72.1
CDE05G3359 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 2.2e-96 357.5 379 53.8
PSO074G0001 Papaver somniferum HOM05D005975 ORTHO05D007373 6.9e-82 309.3 310 54.8
BcaB05g24817 Brassica carinata HOM05D005975 ORTHO05D007373 3.4e-81 307.0 216 69.0
SMO146G0145 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 1.3e-80 305.1 341 50.4
Zm00001eb078910 Zea mays HOM05D005975 ORTHO05D007373 4.6e-78 296.6 155 92.9
Cre14.g633500 Chlamydomonas reinhardtii HOM05D005975 ORTHO05D007373 9.4e-39 166.0 447 29.8
CDE05G0573 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 2.0e-36 158.3 132 59.1
Nn3g18207 Nelumbo nucifera HOM05D005975 ORTHO05D007373 8.5e-24 116.3 78 70.5
Cfa019814 Carpinus fangiana HOM05D005975 ORTHO05D007373 2.4e-10 71.6 58 62.1
Dinv38585 Davidia involucrata HOM05D005975 ORTHO05D007373 1.0e-08 66.2 62 59.7
Nn4g23789 Nelumbo nucifera HOM05D005975 ORTHO05D007373 8.0e-06 56.6 126 27.8


User provided reference genes

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