Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 1.4e-48 196.1 102 100.0
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 4.8e-30 134.4 99 73.7
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 3.0e-24 115.2 77 75.3
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 5.2e-24 114.4 76 77.6
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 8.9e-24 113.6 77 74.0
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 1.2e-23 113.2 82 69.5
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 1.2e-23 113.2 94 62.8
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 1.5e-23 112.8 92 63.0
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 2.0e-23 112.5 97 61.9
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 2.6e-23 112.1 86 65.1
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 4.4e-23 111.3 77 71.4
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 5.7e-23 110.9 95 62.1
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 5.7e-23 110.9 95 62.1
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 5.7e-23 110.9 98 61.2
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 7.5e-23 110.5 90 64.4
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 7.5e-23 110.5 76 71.1
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 1.3e-22 109.8 84 65.5
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 1.3e-22 109.8 90 63.3
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 1.7e-22 109.4 83 66.3
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 2.2e-22 109.0 78 69.2
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 2.2e-22 109.0 78 69.2
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 2.8e-22 108.6 92 60.9
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 2.8e-22 108.6 76 73.7
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 3.7e-22 108.2 77 71.4
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 3.7e-22 108.2 98 60.2
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 4.9e-22 107.8 75 69.3
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 4.9e-22 107.8 74 70.3
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 4.9e-22 107.8 74 70.3
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 4.9e-22 107.8 101 55.4
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 6.3e-22 107.5 75 69.3
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 6.3e-22 107.5 83 65.1
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 6.3e-22 107.5 79 67.1
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 6.3e-22 107.5 75 69.3
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 6.3e-22 107.5 77 68.8
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 8.3e-22 107.1 79 67.1
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 8.3e-22 107.1 79 67.1
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 8.3e-22 107.1 98 58.2
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 1.4e-21 106.3 80 67.5
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 1.8e-21 105.9 92 57.6
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 1.8e-21 105.9 77 67.5
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 1.8e-21 105.9 74 70.3
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 2.4e-21 105.5 103 56.3
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 2.4e-21 105.5 101 56.4
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 2.4e-21 105.5 101 56.4
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 2.4e-21 105.5 83 67.5
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 2.4e-21 105.5 77 67.5
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 3.1e-21 105.1 77 67.5
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 4.1e-21 104.8 101 58.4
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 4.1e-21 104.8 101 56.4
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 5.4e-21 104.4 98 55.1
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 5.4e-21 104.4 96 60.4
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 5.4e-21 104.4 77 67.5
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 5.4e-21 104.4 83 66.3
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 5.4e-21 104.4 90 61.1
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 5.4e-21 104.4 77 64.9
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 7.0e-21 104.0 79 67.1
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 7.0e-21 104.0 78 64.1
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 9.2e-21 103.6 98 58.2
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 1.2e-20 103.2 98 54.1
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 1.2e-20 103.2 97 55.7
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 1.2e-20 103.2 77 64.9
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 1.6e-20 102.8 99 57.6
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 1.6e-20 102.8 62 77.4
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 2.7e-20 102.1 77 66.2
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 2.7e-20 102.1 79 65.8
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 3.5e-20 101.7 100 56.0
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 3.5e-20 101.7 90 62.2
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 3.5e-20 101.7 85 62.4
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 4.5e-20 101.3 82 63.4
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 4.5e-20 101.3 63 76.2
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 5.9e-20 100.9 89 58.4
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 5.9e-20 100.9 87 57.5
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 5.9e-20 100.9 105 58.1
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 5.9e-20 100.9 75 64.0
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 5.9e-20 100.9 88 62.5
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 7.8e-20 100.5 100 60.0
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 7.8e-20 100.5 90 60.0
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 7.8e-20 100.5 75 65.3
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 7.8e-20 100.5 75 65.3
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 7.8e-20 100.5 72 66.7
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 1.7e-19 99.4 78 62.8
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 1.7e-19 99.4 104 55.8
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 1.7e-19 99.4 77 64.9
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 2.3e-19 99.0 75 65.3
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 2.3e-19 99.0 75 66.7
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 2.3e-19 99.0 75 65.3
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 2.9e-19 98.6 58 79.3
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 2.9e-19 98.6 79 62.0
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 3.8e-19 98.2 79 62.0
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 5.0e-19 97.8 79 62.0
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 5.0e-19 97.8 79 62.0
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 5.0e-19 97.8 96 57.3
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 5.0e-19 97.8 92 55.4
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 5.0e-19 97.8 92 55.4
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 8.6e-19 97.1 90 57.8
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 8.6e-19 97.1 98 54.1
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 8.6e-19 97.1 80 65.0
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 1.1e-18 96.7 83 60.2
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 1.5e-18 96.3 92 54.3
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 1.5e-18 96.3 93 55.9
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 2.5e-18 95.5 78 61.5
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 2.5e-18 95.5 79 59.5
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 2.5e-18 95.5 92 54.3
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 4.3e-18 94.7 97 56.7
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 9.5e-18 93.6 90 56.7
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 1.2e-17 93.2 86 62.8
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 1.6e-17 92.8 80 61.2
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 2.1e-17 92.4 75 62.7
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 2.8e-17 92.0 80 62.5
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 3.6e-17 91.7 75 62.7
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 4.7e-17 91.3 90 55.6
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.4e-16 89.7 93 50.5
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.4e-16 89.7 93 50.5
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 2.3e-16 89.0 93 50.5
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 2.3e-16 89.0 93 50.5
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.3e-16 89.0 93 50.5
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 2.3e-16 89.0 100 53.0
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 1.2e-15 86.7 94 50.0
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 1.2e-15 86.7 63 66.7
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 1.7e-14 82.8 65 66.2
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 3.7e-14 81.6 95 46.3
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 1.4e-13 79.7 52 73.1
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 4.1e-13 78.2 79 55.7
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 3.5e-12 75.1 52 71.2
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 3.3e-10 68.6 109 45.0
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 8.0e-09 63.9 49 67.3
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 8.0e-09 63.9 49 67.3


User provided reference genes

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